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Biggel, Michael; Boss, Sara; Uea-Anuwong, Theethawat; Lugsomya, Kittitat; Magouras, Ioannis; Stephan, Roger (2023). Complete Genome Sequence of the Extensively Drug-Resistant Extended-Spectrum β-Lactamase-Producing Proteus mirabilis Isolate HK294, Obtained from Poultry Feces in Hong Kong. Microbiology resource announcements, 12(6), e0022523. American Society for Microbiology 10.1128/mra.00225-23
Scherrer, Simone; Schmitt, Sarah; Rademacher, Fenja; Kuhnert, Peter; Ghielmetti, Giovanni; Peterhans, Sophie; Stephan, Roger (2023). Development of a new multiplex quantitative PCR for the detection of Glaesserella parasuis, Mycoplasma hyorhinis, and Mycoplasma hyosynoviae. MicrobiologyOpen, 12(3), e1353. Wiley 10.1002/mbo3.1353
Neves, Aitana; Walther, Daniel; Martin-Campos, Trinidad; Barbie, Valerie; Bertelli, Claire; Blanc, Dominique; Bouchet, Gérard; Erard, Frédéric; Greub, Gilbert; Hirsch, Hans H; Huber, Michael; Kaiser, Laurent; Leib, Stephen L; Leuzinger, Karoline; Lazarevic, Vladimir; Mäusezahl, Mirjam; Molina, Jorge; Neher, Richard A; Perreten, Vincent; Ramette, Alban; ... (2023). The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata. Microbial genomics, 9(5) Microbiology Society 10.1099/mgen.0.001001
Schmitt, Kira; Biggel, Michael; Stephan, Roger; Willi, Barbara (2022). Massive Spread of OXA-48 Carbapenemase-Producing Enterobacteriaceae in the Environment of a Swiss Companion Animal Clinic. Antibiotics, 11(2) MDPI 10.3390/antibiotics11020213
Wambui, Joseph; Stevens, Marc J A; Sieber, Simon; Cernela, Nicole; Perreten, Vincent; Stephan, Roger (2022). Targeted Genome Mining Reveals the Psychrophilic Clostridium estertheticum Complex as a Potential Source for Novel Bacteriocins, Including Cesin A and Estercticin A. Frontiers in Microbiology, 12, p. 801467. Frontiers 10.3389/fmicb.2021.801467
Ghielmetti, Giovanni; Rosato, Giuliana Rosato; Trovato, Alberto; Friedel, Ute; Kirchgaessner, Constanze; Perroulaz, Carmen; Pendl, Wolfgang; Schulthess, Bettina; Bloemberg, Guido; Keller, Peter M.; Stephan, Roger; Tortoli, Enrico (2021). Mycobacterium helveticum sp. nov., a novel slowly growing mycobacterial species associated with granulomatous lesions in adult swine. International journal of systematic and evolutionary microbiology, 71(1) Society for General Microbiology SGM 10.1099/ijsem.0.004615
Schott, Franziska; Hoffmann, Karolin; Sarno, Eleonora; Bangerter, Patrick D.; Stephan, Roger; Overesch, Gudrun; Haessig, Michael; Sidler, Xaver; Graage, Robert (2021). Evaluation of oral fluids for surveillance of foodborne and zoonotic pathogens in pig farms. Journal of veterinary diagnostic investigation, 33(4), pp. 655-663. Sage 10.1177/10406387211021599
Horlbog, Jule Anna; Stephan, Roger; Stevens, Marc J. A.; Overesch, Gudrun; Kittl, Sonja; Napoleoni, Maira; Silenzi, Valentina; Nüesch-Inderbinen, Magdalena; Albini, Sarah (2021). Feedborne Salmonella enterica Serovar Jerusalem Outbreak in Different Organic Poultry Flocks in Switzerland and Italy Linked to Soya Expeller. Microorganisms, 9(7), p. 1367. MDPI 10.3390/microorganisms9071367
Egli, Adrian; Koch, Daniel; Danuser, Jürg; Hendriksen, Rene S; Driesen, Susanne; Schmid, Diana Coman; Neher, Richard; Mäusezahl, Mirjam; Seth-Smith, Helena Mb; Bloemberg, Guido; Tschudin-Sutter, Sarah; Endimiani, Andrea; Perreten, Vincent; Greub, Gilbert; Schrenzel, Jacques; Stephan, Roger (2020). Symposium report: One Health meets sequencing. Microbes and infection, 22(1), pp. 1-7. Elsevier Masson SAS 10.1016/j.micinf.2019.07.004
Friker, Brian; Morach, Marina; Püntener, Sabrina; Cernela, Nicole; Horlbog, Jule; Stephan, Roger (2020). Assessing the microbiological quality of raw goats' and ewes' tank milk samples in Switzerland. International dairy journal, 102, p. 104609. Elsevier 10.1016/j.idairyj.2019.104609
Bleichenbacher, Stephanie; Stevens, Marc J.A.; Zurfluh, Katrin; Perreten, Vincent; Endimiani, Andrea; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2020). Environmental dissemination of carbapenemase-producing enterobacteriaceae in rivers in Switzerland. Environmental pollution, 265, p. 115081. Elsevier Science 10.1016/j.envpol.2020.115081
Zbinden, Florian R.; De Ste Croix, Megan; Grandgirard, Denis; Haigh, Richard D; Vacca, Irene; Zamudio, Roxana; Goodall, Emily C A; Stephan, Roger; Oggioni, Marco R; Leib, Stephen L. (2020). Pathogenic Differences of Type 1 Restriction-Modification Allele Variants in Experimental Listeria monocytogenes Meningitis. Frontiers in cellular and infection microbiology, 10, p. 590657. Frontiers 10.3389/fcimb.2020.590657
Egli, Adrian; Blanc, Dominique S; Greub, Gilbert; Keller, Peter Michael; Lazarevic, Vladimir; Lebrand, Aitana; Leib, Stephen; Neher, Richard A; Perreten, Vincent; Ramette, Alban; Schrenzel, Jacques; Stephan, Roger; Wagner, Karolin; Wuethrich, Daniel; Xenarios, Ioannis (2018). Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform. Swiss medical weekly, 148(w14693), w14693. EMH Media 10.4414/smw.2018.14693
Keller, Selina M; Stephan, Roger; Künzler, Rahel; Meylan, Mireille; Wittenbrink, Max M (2014). Comparison of fecal culture and F57 real-time polymerase chain reaction for the detection of Mycobacterium avium subspecies paratuberculosis in Swiss cattle herds with a history of paratuberculosis. Acta Veterinaria Scandinavica, 56(1), p. 68. BioMed Central Ltd. 10.1186/s13028-014-0068-9
Künzler, Rahel; Torgerson, Paul; Keller, Selina; Wittenbrink, Max; Stephan, Roger; Knubben-Schweizer, Gabriela; Berchtold, Beat; Meylan, Mireille (2014). Observed management practices in relation to the risk of infection with paratuberculosis and to the spread of Mycobacterium avium subsp. paratuberculosis in Swiss dairy and beef herds. BMC veterinary research, 10(1), pp. 132-143. BioMed Central 10.1186/1746-6148-10-132
Zbinden, Christina; Stephan, Roger; Johler, Sophia; Borel, Nicole; Bünter, Julia; Bruckmaier, Rupert; Wellnitz, Olga (2014). The Inflammatory Response of Primary Bovine Mammary Epithelial Cells to Staphylococcus aureus Strains Is Linked to the Bacterial Phenotype. PLoS ONE, 9(1), e87374. Public Library of Science 10.1371/journal.pone.0087374
Poirel, Laurent; Stephan, Roger; Perreten, Vincent; Nordmann, Patrice (2014). The carbapenemase threat in the animal world: the wrong culprit. Journal of antimicrobial chemotherapy, 69(7), pp. 2007-2008. Oxford University Press 10.1093/jac/dku054
Peng, Silvio; Stephan, Roger; Hummerjohann, Jörg; Tasara, Taurai (2014). Evaluation of three reference genes of Escherichia coli for mRNA expression level normalization in view of salt and organic acid stress exposure in food. FEMS microbiology letters, 355(1), pp. 78-82. Blackwell Publishing Ltd 10.1111/1574-6968.12447
Stritt, Andrea; Tschumi, Sibylle; Kottanattu, Lisa; Bucher, Barbara S; Steinmann, Markus; von Steiger, Niklaus; Stephan, Roger; Hächler, Herbert; Simonetti, Giacomo D (2013). Neonatal hemolytic uremic syndrome after mother-to-child transmission of a low-pathogenic stx2b harboring shiga toxin-producing Escherichia coli. Clinical infectious diseases, 56(1), pp. 114-6. Cary, N.C.: Oxford University Press 10.1093/cid/cis851
Kuhnert, Peter; Korczak, Bozena M.; Stephan, Roger; Joosten, H.; Iversen, C. (2009). Phylogeny and prediction of genetic similarity of Cronobacter and related taxa by multilocus sequence analysis (MLSA). International journal of food microbiology, 136(2), pp. 152-8. Amsterdam: Elsevier Science 10.1016/j.ijfoodmicro.2009.02.022
Feller, Martin; Huwiler, Karin; Stephan, Roger; Altpeter, Ekkehardt; Shang, Aijing; Furrer, Hansjakob; Pfyffer, Gaby E; Jemmi, Thomas; Baumgartner, Andreas; Egger, Matthias (2007). Mycobacterium avium subspecies paratuberculosis and Crohn's disease: a systematic review and meta-analysis. Lancet infectious diseases, 7(9), pp. 607-613. London: Elsevier 10.1016/S1473-3099(07)70211-6
