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Beyoğlu, Diren; Simillion, Cedric; Storni, Federico; De Gottardi, Andrea; Idle, Jeffrey R (2022). A Metabolomic Analysis of Cirrhotic Ascites. Molecules, 27(12), p. 3935. Molecular Diversity Preservation International MDPI 10.3390/molecules27123935
Hobi, Gabriel; Cline, J Mark; Ethun, Kelly F; Simillion, Cedric; Keller, Irene; Stute, Petra (2022). Impact of 6 month conjugated equine estrogen versus estradiol-treatment on biomarkers and enriched gene sets in healthy mammary tissue of non-human primates. PLoS ONE, 17(3), e0264057. Public Library of Science 10.1371/journal.pone.0264057
Hallal, Mahmoud; Braga-Lagache, Sophie; Jankovic, Jovana; Simillion, Cedric; Bruggmann, Rémy; Uldry, Anne-Christine; Allam, Ramanjaneyulu; Heller, Manfred; Bonadies, Nicolas (2021). Inference of kinase-signaling networks in human myeloid cell line models by Phosphoproteomics using kinase activity enrichment analysis (KAEA). BMC cancer, 21(1), p. 789. BioMed Central 10.1186/s12885-021-08479-z
Juanola, Oriol; Hassan, Mohsin; Kumar, Pavitra; Yilmaz, Bahtiyar; Keller, Irene; Simillion, Cedric; Engelmann, Cornelius; Tacke, Frank; Dufour, Jean-François; De Gottardi, Andrea; Moghadamrad, Sheida (2021). Intestinal microbiota drives cholestasis-induced specific hepatic gene expression patterns. Gut microbes, 13(1), pp. 1-20. Taylor & Francis Group 10.1080/19490976.2021.1911534
Tamò, Luca; Fytianos, Kleanthis; Caldana, Fabienne; Simillion, Cedric; Feki, Anis; Nita, Izabela; Heller, Manfred; Geiser, Thomas; Gazdhar, Amiq (2021). Interactome Analysis of iPSC Secretome and Its Effect on Macrophages In Vitro. International journal of molecular sciences, 22(2) MDPI 10.3390/ijms22020958
Di Domenico, Annunziata; Pipinikas, Christodoulos P; Maire, Renaud S; Bräutigam, Konstantin; Simillion, Cedric; Dettmer, Matthias S; Vassella, Erik; Thirlwell, Chrissie; Perren, Aurel; Marinoni, Ilaria (2020). Epigenetic landscape of pancreatic neuroendocrine tumours reveals distinct cells of origin and means of tumour progression. Communications biology, 3(1), p. 740. Springer Nature 10.1038/s42003-020-01479-y
Wang, Limei; Dorn, Patrick; Simillion, Cedric; Froment, Laurène; Berezowska, Sabina Anna; Tschanz, Stefan A.; Haenni, Beat; Blank, Fabian; Wotzkow, Carlos; Peng, Ren-Wang; Marti, Thomas; Bode, Peter Karl; Moehrlen, Ueli; Schmid, Ralph; Hall, Sean (2020). EpCAM+CD73+ mark epithelial progenitor cells in postnatal human lung and is associated with pathogenesis of pulmonary disease including lung adenocarcinoma. American journal of physiology - lung cellular and molecular physiology, 319(5), L794-L809. American Physiological Society 10.1152/ajplung.00279.2019
Radan, Anda-Petronela; Aleksandra Polowy, Justyna; Heverhagen, Anneke; Simillion, Cedric; Baumann, Marc; Raio, Luigi; Schleussner, Ekkehard; Müller, Martin; Surbek, Daniel (2020). Cervico-vaginal placental α-macroglobulin-1 combined with cervical length for the prediction of preterm birth in women with threatened preterm labor. Acta obstetricia et gynecologica Scandinavica, 99(3), pp. 357-363. Wiley-Blackwell 10.1111/aogs.13744
Krempaska, Kristina; Barnowski, Sandra; Gavini, Jacopo; Hobi, Nina; Ebener, Simone; Simillion, Cedric; Stokes, Andrea; Schliep, Ronja; Knudsen, Lars; Geiser, Thomas K.; Funke-Chambour, Manuela (2020). Correction to: Azithromycin has enhanced effects on lung fibroblasts from idiopathic pulmonary fibrosis (IPF) patients compared to controls. Respiratory research, 21(1), p. 29. BioMed Central 10.1186/s12931-020-1304-7
Krempaska, Kristina; Barnowski, Sandra; Gavini, Jacopo; Hobi, Nina; Ebener, Simone; Simillion, Cedric; Stokes, Andrea; Schliep, Ronja; Knudsen, Lars; Geiser, Thomas K.; Funke-Chambour, Manuela (2020). αAzithromycin has enhanced effects on lung fibroblasts from idiopathic pulmonary fibrosis (IPF) patients compared to controls. Respiratory research, 21(1), p. 25. BioMed Central 10.1186/s12931-020-1275-8
Troxler, Lukas J.; Werren, Joel P.; Schaffner, Thierry O.; Mostacci, Nadezda; Vermathen, Peter; Vermathen, Martina; Wüthrich, Daniel; Simillion, Cedric; Brugger, Silvio D.; Bruggmann, Rémy; Hathaway, Lucy J.; Furrer, Julien; Hilty, Markus (2019). Carbon source regulates polysaccharide capsule biosynthesis in Streptococcus pneumoniae. Journal of biological chemistry, 294(46), pp. 17224-17238. American Society for Biochemistry and Molecular Biology 10.1074/jbc.RA119.010764
Radpour, Ramin; Riether, Carsten; Simillion, Cedric; Höpner, Sabine; Bruggmann, Rémy; Ochsenbein, Adrian (2019). CD8+ T cells expand stem and progenitor cells in favorable but not adverse risk acute myeloid leukemia. Leukemia, 33(10), pp. 2379-2392. Nature Publishing Group 10.1038/s41375-019-0441-9
Boos, Laura A; Schmitt, Anja; Moch, Holger; Komminoth, Paul; Simillion, Cedric; Marinoni, Ilaria; Nikiforov, Yuri E; Nikiforova, Marina N; Perren, Aurel; Dettmer, Matthias S. (2019). MiRNAs Are Involved in Tall Cell Morphology in Papillary Thyroid Carcinoma. Cancers, 11(6) MDPI AG 10.3390/cancers11060885
Haas, Quentin; Frias Boligan, Kayluz; Jandus, Camilla; Schneider, Christoph; Simillion, Cedric; Stanczak, Michal A; Haubitz, Monika; Jafari, Morteza; Zippelius, Alfred; Baerlocher, Gabriela M.; Läubli, Heinz; Hunger, Robert E.; Romero, Pedro; Simon, Hans-Uwe; von Gunten, Stephan (2019). Siglec-9 Regulates an Effector Memory CD8 T-cell Subset That Congregates in the Melanoma Tumor Microenvironment. Cancer immunology research, 7(5), pp. 707-718. American Association for Cancer Research 10.1158/2326-6066.CIR-18-0505
Stivala, Simona; Codilupi, Tamara; Brkic, Sime; Baerenwaldt, Anne; Ghosh, Nilabh; Hao-Shen, Hui; Dirnhofer, Stephan; Dettmer, Matthias S.; Simillion, Cedric; Kaufmann, Beat A; Chiu, Sophia; Keller, Matthew; Kleppe, Maria; Hilpert, Morgane; Buser, Andreas S; Passweg, Jakob R; Radimerski, Thomas; Skoda, Radek C; Levine, Ross L and Meyer, Sara C (2019). Targeting compensatory MEK/ERK activation increases JAK inhibitor efficacy in myeloproliferative neoplasms. The journal of clinical investigation, 129(4), pp. 1596-1611. American Society for Clinical Investigation 10.1172/JCI98785
Frazão, Josias B; Colombo, Martino; Simillion, Cedric; Bilican, Adem; Keller, Irene; Wüthrich, Daniel; Zhu, Zhiqing; Okoniewski, Michal J; Bruggmann, Rémy; Condino-Neto, Antonio; Newburger, Peter E (2019). Gene expression in chronic granulomatous disease and interferon-γ receptor-deficient cells treated in vitro with interferon-γ. Journal of cellular biochemistry, 120(3), pp. 4321-4332. Wiley-Blackwell 10.1002/jcb.27718
Micossé, Claire; von Meyenn, Karl-Leonhard; Steck, Oliver; Kipfer, Enja; Adam, Christian; Simillion, Cedric; Jafari, Morteza; Olah, Peter; Yawalkar, Nikhil; Simon, Dagmar; Borradori, Luca; Kuchen, Stefan; Yerly, Daniel; Homey, Bernhard; Conrad, Curdin; Snijder, Berend; Schmidt, Marc; Schlapbach, Christoph (2019). Human "TH9" cells are a subpopulation of PPAR-γ+ TH2 cells. Science immunology, 4(31) American Association for the Advancement of Science 10.1126/sciimmunol.aat5943
V'kovski, Philip; Gerber, Markus; Kelly, Jenna Nicole; Pfänder, Stephanie; Ebert, Nadine; Braga Lagache, Sophie; Simillion, Cedric; Portmann, Jasmine; Stalder, Hanspeter; Gaschen, Véronique; Bruggmann, Rémy; Stoffel, Michael Hubert; Heller, Manfred; Dijkman, Ronald; Thiel, Volker Earl (2019). Determination of host proteins composing the microenvironment of coronavirus replicase complexes by proximity-labeling. eLife, 8 eLife Sciences Publications 10.7554/eLife.42037
Tamò, Luca Giuseppe Athos; Simillion, Cedric; Hibaoui, Youssef; Feki, Anis; Gugger, Mathias; Prasse, Antje; Jäger, Benedikt; Goldmann, Torsten; Geiser, Thomas; Gazdhar, Amiq (2018). Gene Network Analysis of Interstitial Macrophages After Treatment with Induced Pluripotent Stem Cells Secretome (iPSC-cm) in the Bleomycin Injured Rat Lung. Stem cell reviews and reports, 14(3), pp. 412-424. Springer 10.1007/s12015-017-9790-9
Saran, Uttara; Guarino, Maria; Rodriguez Navarro, Sarai; Simillion, Cedric; Montani, Matteo; Foti, Michelangelo; Humar, Bostjan; St-Pierre, Marie; Dufour, Jean-François (2018). Anti-tumoral effects of exercise on hepatocellular carcinoma growth. Hepatology communications, 2(5), pp. 607-620. Wiley 10.1002/hep4.1159
Chennupati, Vijaykumar; Veiga, Diogo Ft; Maslowski, Kendle M; Andina, Nicola; Tardivel, Aubry Bernard Maurice; Yu, Eric Chi-Wang; Stilinovic, Martina; Simillion, Cedric; Duchosal, Michel A; Quadroni, Manfredo; Roberts, Irene; Sankaran, Vijay G; MacDonald, H Robson; Fasel, Nicolas; Angelillo, Anne; Schneider, Pascal; Hoang, Trang; Allam, Ramanjaneyulu (2018). Ribonuclease inhibitor 1 regulates erythropoiesis by controlling GATA1 translation. Journal of clinical investigation, 128(4), pp. 1597-1614. American Society for Clinical Investigation 10.1172/JCI94956
Saurer, Leslie; Zysset, Daniel; Rihs, Silvia; Mager, Lukas; Gusberti, Matteo; Simillion, Cedric; Lugli, Alessandro; Zlobec, Inti; Krebs, Philippe; Müller, Christoph (2017). TREM-1 promotes intestinal tumorigenesis. Scientific Reports, 7(1), p. 14870. Nature Publishing Group 10.1038/s41598-017-14516-4
Simillion, Cedric; Semmo, Nasser; Idle, Jeffrey; Beyoglu, Diren (2017). Robust Regression Analysis of GCMS Data Reveals Differential Rewiring of Metabolic Networks in Hepatitis B and C Patients. Metabolites, 7(4) MDPI 10.3390/metabo7040051
Mager, Lukas Franz; Kölzer, Viktor Hendrik; Stuber Roos, Regula; Thoo Sin Lang, Lester; Keller, Irene; Köck, Ivonne; Langenegger, Maya; Simillion, Cedric; Pfister, Simona P; Faderl, Martin Richard; Genitsch Gratwohl, Vera; Tcymbarevich, Irina; Juillerat, Pascal; Li, Xiaohong; Xia, Yu; Karamitopoulou, Evanthia; Lyck, Ruth; Zlobec, Inti; Hapfelmeier, Siegfried Hektor; Bruggmann, Rémy; ... (2017). The ESRP1-GPR137 axis contributes to intestinal pathogenesis. eLife, 6 eLife Sciences Publications 10.7554/eLife.28366
Golla, Srujana; Golla, Jaya Prakash; Krausz, Kristopher W; Manna, Soumen K; Simillion, Cedric; Beyoglu, Diren; Idle, Jeffrey; Gonzalez, Frank J (2017). Metabolomic Analysis of Mice Exposed to Gamma Radiation Reveals a Systemic Understanding of Total-Body Exposure. Radiation research, 187(5), pp. 612-629. Radiation Research Society 10.1667/RR14592.1
Leni, Zaira; Ćwiek, Paulina; Dimitrova, Valeriya; Dulcey, Andrea S; Zamboni, Nicola; Simillion, Cedric; Rossi, Geetha; Leibundgut, Kurt; Arcaro, Alexandre (2017). 2-Deoxy-D-glucose Restore Glucocorticoid Sensitivity in Acute Lymphoblastic Leukemia via Modification of N-Linked Glycosylation in an Oxygen Tension-Independent Manner. Oxidative medicine and cellular longevity, 2017, p. 2487297. Hindawi 10.1155/2017/2487297
Zysset, Daniel; Weber, Benjamin; Rihs, Silvia; Brasseit, Jennifer; Freigang, Stefan Bernd; Riether, Carsten; Banz Wälti, Yara; Cerwenka, Adelheid; Simillion, Cedric; Marques-Vidal, Pedro; Ochsenbein, Adrian; Saurer, Leslie; Müller, Christoph (2016). TREM-1 links dyslipidemia to inflammation and lipid deposition in atherosclerosis. Nature communications, 7(13151), p. 13151. Nature Publishing Group 10.1038/ncomms13151
Shainer, Reut; Almogi-Hazan, Osnat; Berger, Arye; Hinden, Liad; Müller, Martin; Brodie, Chaya; Simillion, Cedric; Paidas, Michael; Barnea, Eytan R; Or, Reuven (2016). PreImplantation factor (PIF) therapy provides comprehensive protection against radiation induced pathologies. OncoTarget, 7(37), pp. 58975-58994. Impact Journals LLC 10.18632/oncotarget.10635
