Lobachev, Oleg; Funatomi, Takuya; Pfaffenroth, Alexander; Forster, Reinhold; Knudsen, Lars; Wrede, Christoph; Guthe, Michael; Haberthür, David; Hlushchuk, Ruslan; Salaets, Thomas; Toelen, Jaan; Gaffling, Simone; Mühlfeld, Christian; Grothausmann, Roman (2021). Evaluating registrations of serial sections with distortions of the ground truths. IEEE Access, 9, pp. 152514-152535. IEEE 10.1109/ACCESS.2021.3124341
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Lobachev_Evaluating_registrations_of_serial_sections_with_distortions_of_the_ground_truths.pdf - Accepted Version Available under License Creative Commons: Attribution (CC-BY). Download (14MB) | Preview |
Registration of histological serial sections is a challenging task. Serial sections exhibit distortions and damage from sectioning. Missing information on how the tissue looked before cutting makes a realistic validation of 2D registrations extremely difficult. This work proposes methods for ground-truth-based evaluation of registrations. Firstly, we present a methodology to generate test data for registrations. We distort an innately registered image stack in the manner similar to the cutting distortion of serial sections. Test cases are generated from existing 3D data sets, thus the ground truth is known. Secondly, our test case generation premises evaluation of the registrations with known ground truths. Our methodology for such an evaluation technique distinguishes this work from other approaches. Both under- and over-registration become evident in our evaluations. We also survey existing validation efforts. We present a full-series evaluation across six different registration methods applied to our distorted 3D data sets of animal lungs. Our distorted and ground truth data sets are made publicly available.
Item Type: |
Journal Article (Original Article) |
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Division/Institute: |
09 Interdisciplinary Units > Microscopy Imaging Center (MIC) 04 Faculty of Medicine > Pre-clinic Human Medicine > Institute of Anatomy 04 Faculty of Medicine > Pre-clinic Human Medicine > Institute of Anatomy > Topographical and Clinical Anatomy |
UniBE Contributor: |
Haberthür, David, Hlushchuk, Ruslan |
Subjects: |
600 Technology > 610 Medicine & health |
ISSN: |
2169-3536 |
Publisher: |
IEEE |
Language: |
English |
Submitter: |
David Christian Haberthür |
Date Deposited: |
15 Nov 2021 16:04 |
Last Modified: |
05 Dec 2022 15:54 |
Publisher DOI: |
10.1109/ACCESS.2021.3124341 |
BORIS DOI: |
10.48350/160453 |
URI: |
https://boris.unibe.ch/id/eprint/160453 |
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