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Riou, Julien; Studer, Erik; Fesser, Anna; Schuster, Tobias Magnus; Low, Nicola; Egger, Matthias; Hauser, Anthony Willy (2024). Surveillance of SARS-CoV-2 prevalence from repeated pooled testing: application to Swiss routine data. Epidemiology and infection, 152(e100) Cambridge University Press 10.1017/S0950268824000876
Bouman, Judith A; Hauser, Anthony; Grimm, Simon L; Wohlfender, Martin; Bhatt, Samir; Semenova, Elizaveta; Gelman, Andrew; Althaus, Christian L; Riou, Julien (2024). Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models. PLoS computational biology, 20(4), e1011575. Public Library of Science 10.1371/journal.pcbi.1011575
Brown, Jennifer A; Hauser, Anthony; Abela, Irene A; Pasin, Chloé; Epp, Selina; Mohloanyane, Tsepang; Nsakala, Bienvenu L; Trkola, Alexandra; Labhardt, Niklaus D; Kouyos, Roger D; Günthard, Huldrych F (2023). Seroprofiling of antibodies against endemic human coronaviruses and SARS-CoV-2 in an HIV cohort in Lesotho: correlates of antibody response and seropositivity. Journal of infectious diseases, 228(8), pp. 1042-1054. Oxford University Press 10.1093/infdis/jiad197
Reichmuth, Martina L; Heron, Leonie; Riou, Julien; Moser, André; Hauser, Anthony; Low, Nicola; Althaus, Christian L (2023). Socio-demographic characteristics associated with COVID-19 vaccination uptake in Switzerland: longitudinal analysis of the CoMix study. BMC public health, 23(1), p. 1523. BioMed Central 10.1186/s12889-023-16405-0
Riou, Julien; Hauser, Anthony; Fesser, Anna; Althaus, Christian L; Egger, Matthias; Konstantinoudis, Garyfallos (2023). Direct and indirect effects of the COVID-19 pandemic on mortality in Switzerland. Nature communications, 14(1), p. 90. Nature Publishing Group 10.1038/s41467-022-35770-9
Hauser, Anthony; Goldstein, Fardo; Reichmuth, Martina L; Kouyos, Roger D; Wandeler, Gilles; Egger, Matthias; Riou, Julien (2022). Acquired HIV drug resistance mutations on first-line antiretroviral therapy in Southern Africa: Systematic review and Bayesian evidence synthesis. Journal of clinical epidemiology, 148, pp. 135-145. Elsevier 10.1016/j.jclinepi.2022.02.005
Buitrago-Garcia, Diana; Ipekci, Aziz Mert; Heron, Leonie; Imeri, Hira; Araujo-Chaveron, Lucia; Arevalo-Rodriguez, Ingrid; Ciapponi, Agustín; Cevik, Muge; Hauser, Anthony; Alam, Muhammad Irfanul; Meili, Kaspar; Meyerowitz, Eric A; Prajapati, Nirmala; Qiu, Xueting; Richterman, Aaron; Robles-Rodriguez, William Gildardo; Thapa, Shabnam; Zhelyazkov, Ivan; Salanti, Georgia and Low, Nicola (2022). Occurrence and transmission potential of asymptomatic and presymptomatic SARS-CoV-2 infections: Update of a living systematic review and meta-analysis. PLoS medicine, 19(5), e1003987. Public Library of Science 10.1371/journal.pmed.1003987
Anderegg, Nanina; Althaus, Christian L; Colin, Samuel; Hauser, Anthony; Laube, Anne; Mäusezahl, Mirjam; Wagner, Moritz; Zaffora, Biagio; Riou, Julien (2022). Assessing real-world vaccine effectiveness against severe forms of SARS-CoV-2 infection: an observational study from routine surveillance data in Switzerland. Swiss medical weekly, 152, w30163. EMH Schweizerischer Ärzteverlag 10.4414/smw.2022.w30163
Hauser, Anthony Willy (2021). Modelling HIV Drug Resistance in Southern Africa. (Unpublished). (Dissertation, University of Bern, Faculty of Medicine, the Faculty of Science and the Vetsuisse Faculty)
Kachalov, Viacheslav N; Nguyen, Huyen; Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Sommerstein, Rami; Kuster, Stefan P; Hauser, Anthony; Abel Zur Wiesch, Pia; Klein, Eili; Kouyos, Roger D (2021). Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS computational biology, 17(1), e1008446. Public Library of Science 10.1371/journal.pcbi.1008446
Tepekule, Burcu; Hauser, Anthony; Kachalov, Viacheslav N; Andresen, Sara; Scheier, Thomas; Schreiber, Peter W; Günthard, Huldrych F; Kouyos, Roger D (2021). Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19. PLoS computational biology, 17(1), e1008609. Public Library of Science 10.1371/journal.pcbi.1008609
Hauser, Anthony; Kusejko, Katharina; Johnson, Leigh F; Günthard, Huldrych F; Riou, Julien; Wandeler, Gilles; Egger, Matthias; Kouyos, Roger D (2020). Impact of scaling up dolutegravir on antiretroviral resistance in South Africa: A modeling study. PLoS medicine, 17(12), e1003397. Public Library of Science 10.1371/journal.pmed.1003397
Hauser, Anthony; Counotte, Michel J.; Margossian, Charles C; Konstantinoudis, Garyfallos; Low, Nicola; Althaus, Christian L.; Riou, Julien (2020). Estimation of SARS-CoV-2 mortality during the early stages of an epidemic: A modeling study in Hubei, China, and six regions in Europe. PLoS medicine, 17(7), e1003189. Public Library of Science 10.1371/journal.pmed.1003189
Hauser, Anthony; Kusejko, Katharina; Johnson, Leigh F; Wandeler, Gilles; Riou, Julien; Goldstein, Fardo; Egger, Matthias; Kouyos, Roger D (2019). Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa. PLoS computational biology, 15(6), e1007083. Public Library of Science 10.1371/journal.pcbi.1007083
de Waal, Reneé; Lessells, Richard; Hauser, Anthony; Kouyos, Roger; Davies, Mary-Ann; Egger, Matthias; Wandeler, Gilles (2018). HIV drug resistance in sub-Saharan Africa: public health questions and the potential role of real-world data and mathematical modelling. Journal of virus eradication, 4(Suppl 2), pp. 55-58. Mediscript
