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Kang, Bong Joo; Rohwer, Egmont J.; Rohrbach, David; Zyaee, Elnaz; Akbarimoosavi, Maryam; Ollmann, Zoltan; Sorohhov, Gleb; Borgoo, Alex; Cascella, Michele; Cannizzo, Andrea; Decurtins, Silvio; Stanley, Robert J.; Liu, Shi-Xia; Feurer, Thomas (2024). Time-resolved THz Stark spectroscopy of molecules in solution. Nature Communications, 15(1) Springer Nature 10.1038/s41467-024-48164-w
Aeschimann, Walter; Kammer, Stephan; Staats, Stefanie; Schneider, Petra; Schneider, Gisbert; Rimbach, Gerald; Cascella, Michele; Stocker, Achim (2021). Engineering of a functional γ-tocopherol transfer protein. Redox biology, 38, p. 101773. Elsevier 10.1016/j.redox.2020.101773
Peltzer, Raphael Mathias; Kolli, Hima Bindu; Stocker, Achim; Cascella, Michele (2018). Self-Assembly of α-Tocopherol Transfer Protein Nanoparticles: A Patchy Protein Model. The Journal of Physical Chemistry B, 122(28), pp. 7066-7072. American Chemical Society 10.1021/acs.jpcb.8b05936
Aeschimann, Walter; Staats, Stefanie; Kammer, Stephan Martin; Olieric, Natacha; Jeckelmann, Jean-Marc; Fotiadis, Dimitrios José; Netscher, Thomas; Rimbach, Gerald; Cascella, Michele; Stocker, Achim (2017). Self-assembled α-Tocopherol Transfer Protein Nanoparticles Promote Vitamin E Delivery Across an Endothelial Barrier. Scientific Reports, 7(1) Nature Publishing Group 10.1038/s41598-017-05148-9
Lamprakis, Christos; Stocker, Achim; Cascella, Michele (2015). Mechanisms of recognition and binding of α-TTP to the plasma membrane by multi-scale molecular dynamics simulations. Frontiers in Molecular Biosciences, 2(36) Frontiers 10.3389/fmolb.2015.00036
Christen, Monika; Marcaida, Maria; Lamprakis, Christos; Aeschimann, Walter; Vaithilingam, Jathana; Schneider, Petra; Hilbert, Manuel; Schneider, Gisbert; Cascella, Michele; Stocker, Achim (2015). Evidence for direct squalene and 2,3-oxidosqualene binding by supernatant protein factor. Journal of structural biology, 190(190), pp. 261-270. Elsevier 10.1016/j.jsb.2015.05.001
Geng, Yan; Yi, Chenyi; Bircher, Martin Peter; Decurtins, Silvio; Cascella, Michele; Grätzel, Michael; Liu, Shi-Xia (2015). Anthanthrene dye-sensitized solar cells: influence of the number of anchoring groups and substitution motif. RSC advances, 5(119), pp. 98643-98652. Royal Society of Chemistry 10.1039/C5RA21917E
Bolze, Christin Saskia; Helbling, Rachel; Owen, Robin L.; Pearson, Arwen R.; Pompidor, Guillaume; Dworkowski, Florian; Furrer, Julien; Golczak, Marcin; Fuchs, Martin; Palczewski, Krzysztof; Cascella, Michele; Stocker, Achim (2014). Human Cellular Retinaldehyde-Binding Protein Has Secondary Thermal 9- cis -Retinal Isomerase Activity. Journal of the American Chemical Society, 136(1), pp. 137-146. American Chemical Society 10.1021/ja411366w
Amacher, Anneliese; Luo, Hewei; Liu, Zitong; Bircher, Martin; Cascella, Michele; Hauser, Jürg; Decurtins, Silvio; Zhang, Deqing; Liu, Shi-Xia (2014). Electronic tuning effects via cyano substitution of a fused tetrathiafulvalene–benzothiadiazole dyad for ambipolar transport properties. RSC advances, 4(6), pp. 2873-2878. Royal Society of Chemistry 10.1039/c3ra46784h
Helbling, Rachel E.; Lamprakis, Christos; Aeschimann, Walter; Bolze, Cristin S.; Stocker, Achim; Cascella, Michele (2014). Mechanisms of Ligand–Protein Interaction in Sec-14-like Transporters Investigated by Computer Simulations. CHIMIA, 68(9), pp. 615-619. Bern: Schweizerische Chemische Gesellschaft 10.2533/chimia.2014.615
Amacher, Anneliese; Yi, Chenyi; Yang, Jiabao; Bircher, Martin Peter; Fu, Yongchun; Cascella, Michele; Grätzel, Michael; Decurtins, Silvio; Liu, Shi-Xia (2014). A quinoxaline-fused tetrathiafulvalene-based sensitizer for efficient dye-sensitized solar cells. Chemical communications, 50(49), pp. 6540-6542. Royal Society of Chemistry 10.1039/C4CC02696A
Collu, Francesca; Cascella, Michele (2013). Multidrug Resistance and Efflux Pumps: Insights from Molecular Dynamics Simulations. Current topics in medicinal chemistry, 13(24), pp. 3165-3183. Bentham Science Publishers
Simona, Fabio; Nussbaumer, Alina L.; Häner, Robert; Cascella, Michele (2013). Supramolecular Organization of Heptapyrenotide Oligomers—An in Depth Investigation by Molecular Dynamics Simulations. Journal of physical chemistry - B, 117(8), pp. 2576-2585. Washington, D.C.: American Chemical Society 10.1021/jp310320f
Helbling, Rachel E.; Bolze, Christin Saskia; Golczak, Marcin; Palczewski, Krzysztof; Stocker, Achim; Cascella, Michele (2013). Cellular Retinaldehyde Binding Protein—Different Binding Modes and Micro-Solvation Patterns for High-Affinity 9- cis - and 11- cis -Retinal Substrates. Journal of physical chemistry - B, 117(37), pp. 10719-10729. American Chemical Society 10.1021/jp405410t
Cascella, Michele; Bärfuss, Simon; Stocker, Achim (2013). Cis-retinoids and the chemistry of vision. Archives of biochemistry and biophysics, 539(2), pp. 187-195. Elsevier 10.1016/j.abb.2013.06.003
Hai, N. T. M.; Furrer, Julien; Gjuroski, Ilche; Bircher, M. P.; Cascella, Michele; Broekmann, Peter (2013). On the Acceleration of Cu Electrodeposition by TBPS (3,3-thiobis-1-propanesulfonic acid): A Combined Electrochemical, STM, NMR, ESI-MS and DFT Study. Journal of the electrochemical society, 160(12), D3158-D3164. The Electrochemical Society 10.1149/2.030312jes
Ravi, Harish Kumar; Stach, Michaela; Soares, Thereza; Darbre, Tamis; Reymond, Jean-Louis; Cascella, Michele (2013). Electrostatics and Flexibility Drive Membrane Recognition and Early Penetration by Antimicrobial Peptide Dendrimer bH1. Chemical communications, 49(78), pp. 8821-8823. Royal Society of Chemistry 10.1039/C3CC44912B
Spiga, Enrico; Alemani, Davide; Degiacomi, Matteo; Cascella, Michele; Dal Peraro, Matteo (2013). Electrostatic-consistent coarse-grained potentials for molecular simulations of proteins. Journal of chemical theory and computation, 9(8), pp. 3515-3526. American Chemical Society 10.1021/ct400137q
Sigstam, Thérèse; Gannon, Gregory; Cascella, Michele; Pecson, Brian M.; Wigginton, Krista R.; Kohn, Tamar (2013). Subtle differences in virus composition affect disinfection kinetics and mechanisms. Applied and environmental microbiology, 79(11), pp. 3455-3467. American Society for Microbiology 10.1128/AEM.00663-13
Helbling, Rachel E.; Aeschimann, Walter; Simona, Fabio; Stocker, Achim; Cascella, Michele (2012). Engineering Tocopherol Selectivity in alpha-TTP: A Combined In Vitro/In Silico Study. PLoS ONE, 7(11), e49195. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0049195
Alemani, Davide; Collu, Francesca; Cascella, Michele; Dal Peraro, Matteo (2010). A Nonradial Coarse-Grained Potential for Proteins Produces Naturally Stable Secondary Structure Elements. Journal of chemical theory and computation, 6(1), pp. 315-324. Washington, D.C.: American Chemical Society 10.1021/ct900457z
Garrec, Julian; Cascella, Michele; Röthlisberger, Ursula; Fleurat-Lessard, Paul (2010). Low Inhibiting Power of N∙∙∙CO Based Peptidomimetic Compounds against HIV-1 Protease: Insights from a QM/MM Study. Journal of chemical theory and computation, 6(4), pp. 1369-1379. Washington, D.C.: American Chemical Society 10.1021/ct9004728
Cascella, Michele; Lin, I-Chun; Tavernelli, Ivano; Rothlisberger, Ursula (2009). Dispersion corrected atom-centered potentials for Phosphorus. Journal of chemical theory and computation, 5(11), pp. 2930-2934. Washington, D.C.: American Chemical Society 10.1021/ct9003756
Cascella, Michele; Dal Peraro, Matteo (2009). Challenges and perspective in biomolecular simulations: from the atomistic picture to multiscale modeling. CHIMIA, 63(1-2), pp. 14-18. Bern: Schweizerische Chemische Gesellschaft 10.2533/chimia.2009.14
Garbuio, Viviana; Cascella, Michele; Pulci, Olivia (2009). Excited state properties of liquid water. Journal of Physics: Condensed Matter, 21(3), p. 33101. Bristol: Institute of Physics Publishing IOP 10.1088/0953-8984/21/3/033101
El-Turk, Farah; Cascella, Michele; Ouertatani-Sakouhi, Hajer; Narayanan, Raghaverndran Lakshmi; Leng, Lin; Bucala, Richard; Zweckstetter, Markus; Rothlisberger, Ursula; Lashuel, Hilal A. (2008). The conformational flexibility of the carboxy terminal residues 105-114 is a key modulator of the catalytic activity and stabilty of macrophage migration inhibitory factor. Biochemistry, 47(40), pp. 10740-10756. Washington, D.C.: American Chemical Society 10.1021/bi800603x
Cascella, Michele; Neri, Marilisa A.; Carloni, Paolo; Dal Peraro, Matteo (2008). Topologically based multipolar reconstruction of electrostatic interactions in multiscale simulations of proteins. Journal of chemical theory and computation, 4(8), pp. 1378-1385. Washington, D.C.: American Chemical Society 10.1021/ct800122x
Aeschimann, Walter; Staats, Stefanie; Kammer, Stephan Martin; Olieric, Natacha; Jeckelmann, Jean-Marc; Fotiadis, Dimitrios José; Netscher, Thomas; Rimbach, Gerald; Cascella, Michele; Stocker, Achim (2017). Self-assembled α-Tocopherol Transfer Protein Nanoparticles Promote Vitamin E Delivery Across an Endothelial Barrier (Unpublished). In: 52nd Bürgenstock Conference. Brunnen, Switzerland. 30th of April to 4th of May.
Nguyen, H.; Broekmann, Peter; Flügel, A.; Mayer, D.; Simona, Fabio; Cascella, Michele (2012). From Structure to function: Towards an atomistic understanding of the action of additives relevant for the Damascene and TSV copper plating. Book of Abstracts, p. 309.
