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Bustamante Eduardo, Mariana; Keller, Irene; Schuster, Nathalie; Aebi, Stefan; Jaggi, Rolf (2023). Molecular characterization of breast cancer cell pools with normal or reduced ability to respond to progesterone: a study based on RNA-seq. Journal, genetic engineering & biotechnology, 21(1), p. 81. Springer 10.1186/s43141-023-00541-6
Bustamante Eduardo, Mariana; Popovici, Vlad; Imboden, Sara; Aebi, Stefan; Ballabio, Nadja; Altermatt, Hans Jörg; Günthert, Andreas; Jaggi, Rolf (2019). Characterization of molecular scores and gene expression signatures in primary breast cancer, local recurrences and brain metastases. BMC cancer, 19(1), p. 549. BioMed Central 10.1186/s12885-019-5752-8
Popovici, Vlad; Budinská, Eva; Čápková, Lenka; Schwarz, Daniel; Dušek, Ladislav; Feit, Josef; Jaggi, Rolf (2016). Joint analysis of histopathology image features and gene expression in breast cancer. BMC bioinformatics, 17(1), p. 209. BioMed Central 10.1186/s12859-016-1072-z
Huber, F; Montani, Matteo; Sulser, T; Jaggi, Rolf; Wild, P; Moch, H; Gevensleben, H; Schmid-Maurer, Christine; Wyder, Stefan; Kristiansen, G (2015). Comprehensive validation of published immunohistochemical prognostic biomarkers of prostate cancer-what has gone wrong? A blueprint for the way forward in biomarker studies. British journal of cancer, 112(1), pp. 140-148. Nature Publishing Group 10.1038/bjc.2014.588
Gautschi, O.; Mach, N.; Rothschild, S.; Li, Qiyu; Stahel, R. A.; Zippelius, A.; Cathomas, R.; Früh, M.; Betticher, D. C.; Peters, S.; Rauch, D.; Feilchenfeldt, J.; Bubendorf, L.; Savic, S.; Jaggi, Rolf; Oppliger Leibundgut, Elisabeth; Largiadèr, Carlo Rodolfo; Brutsche, M.; Pilop, C.; Stalder, L.; ... (2015). Bevacizumab, Pemetrexed, and Cisplatin, or Bevacizumab and Erlotinib for Patients With Advanced Non-Small-Cell Lung Cancer Stratified by Epidermal Growth Factor Receptor Mutation: Phase II Trial SAKK19/09. Clinical lung cancer, 16(5), pp. 358-365. Elsevier 10.1016/j.cllc.2015.02.007
Bustin, Stephen A.; Benes, Vladimir; Garson, Jeremy; Hellemans, Jan; Huggett, Jim; Kubista, Mikael; Mueller, Reinhold; Nolan, Tania; Pfaffl, Michael W.; Shipley, Gregory; Wittwer, Carl T.; Schjerling, Peter; Day, Philip J.; Abreu, Mónica; Aguado, Begoña; Beaulieu, Jean-François; Beckers, Anneleen; Bogaert, Sara; Browne, John A.; Carrasco-Ramiro, Fernando; ... (2013). The need for transparency and good practices in the qPCR literature. Nature methods, 10(11), pp. 1063-1067. Nature Publishing Group 10.1038/nmeth.2697
Cathomas, Richard; Rothermundt, Christian; Klingbiel, Dirk; Bubendorf, Lukas; Jaggi, Rolf; Betticher, Daniel C; Brauchli, Peter; Cotting, Denise; Droege, Cornelia; Winterhalder, Ralph; Siciliano, Daniele; Berthold, Dominik R; Pless, Miklos; Schiess, Ralph; von Moos, Roger; Gillessen, Silke (2012). Efficacy of cetuximab in metastatic castration-resistant prostate cancer might depend on EGFR and PTEN expression: results from a phase II trial (SAKK 08/07). Clinical cancer research, 18(21), pp. 6049-57. Philadelphia, Pa.: American Association for Cancer Research 10.1158/1078-0432.CCR-12-2219
Mortezavi, Ashkan; Hermanns, Thomas; Seifert, Hans-Helge; Baumgartner, Martin K; Provenzano, Maurizio; Sulser, Tullio; Burger, Maximilian; Montani, Matteo; Ikenberg, Kristian; Hofstädter, Ferdinand; Hartmann, Arndt; Jaggi, Rolf; Moch, Holger; Kristiansen, Glen; Wild, Peter J (2011). KPNA2 expression is an independent adverse predictor of biochemical recurrence after radical prostatectomy. Clinical cancer research, 17(5), pp. 1111-21. Philadelphia, Pa.: American Association for Cancer Research 10.1158/1078-0432.CCR-10-0081
Moor, A E; Guevara, C; Altermatt, H J; Warth, R; Jaggi, R; Aebi, S (2011). PRO_10--a new tissue-based prognostic multigene marker in patients with early estrogen receptor-positive breast cancer. Pathobiology, 78(3), pp. 140-8. Basel: Karger 10.1159/000323809
Gottstein, Bruno; Wittwer, Matthias; Schild, Marc; Merli, Michael; Leib, Stephen L.; Müller, Norbert; Müller, Joachim; Jaggi, Rolf (2010). Hepatic gene expression profile in mice perorally infected with Echinococcus multilocularis eggs. PLoS ONE, 5(4), e9779. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0009779
Antonov, Janine; Popovici, Vlad; Delorenzi, Mauro; Wirapati, Pratyaksha; Baltzer, Anna; Oberli, Andrea; Thürlimann, Beat; Giobbie-Hurder, Anita; Viale, Giuseppe; Altermatt, Hans Jörg; Aebi, Stefan; Jaggi, Rolf (2010). Molecular risk assessment of BIG 1-98 participants by expression profiling using RNA from archival tissue. BMC cancer, 10, p. 37. London: BioMed Central 10.1186/1471-2407-10-37
Popovici, Vlad; Goldstein, Darlene R; Antonov, Janine; Jaggi, Rolf; Delorenzi, Mauro; Wirapati, Pratyaksha (2009). Selecting control genes for RT-QPCR using public microarray data. BMC bioinformatics, 10, p. 42. London: BioMed Central 10.1186/1471-2105-10-42
Schobesberger, Martina; Baltzer, Anna; Oberli, Andrea; Kappeler, Andreas; Gugger, Mathias; Burger, Hana; Jaggi, Rolf (2008). Gene expression variation between distinct areas of breast cancer measured from paraffin-embedded tissue cores. BMC cancer, 8, p. 343. London: BioMed Central 10.1186/1471-2407-8-343
Oberli, Andrea; Popovici, Vlad; Delorenzi, Mauro; Baltzer, Anna; Antonov, Janine; Matthey, Sybille; Aebi, Stefan; Altermatt, Hans Jörg; Jaggi, Rolf (2008). Expression profiling with RNA from formalin-fixed, paraffin-embeeded material. BMC Genomics, 1(1), p. 9. London: BioMed Central 10.1186/1755-8794-1-9
Baltzer, A; Svanborg, C; Jaggi, R (2004). Apoptotic cell death in the lactating mammary gland is enhanced by a folding variant of alpha-lactalbumin. Cellular and molecular life sciences, 61(10), pp. 1221-8. Basel: Birkhäuser-Verlag 10.1007/s00018-004-4046-7
