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Salazar-Vizcaya, Luisa; Wandeler, Gilles; Fehr, Jan; Braun, Dominique; Cavassini, Matthias; Stoeckle, Marcel; Bernasconi, Enos; Hoffmann, Matthias; Rougemont, Mathieu; Béguelin, Charles; Rauch, Andri (2018). Impact of Direct-Acting Antivirals on the Burden of HCV Infection Among Persons Who Inject Drugs and Men Who Have Sex With Men in the Swiss HIV Cohort Study. Open Forum Infectious Diseases, 5(7), ofy154. Oxford University Press 10.1093/ofid/ofy154
Begré, Lorin; Boyd, Anders; Plissonnier, Marie-Laure; Testoni, Barbara; Salazar-Vizcaya, Luisa; Suter-Riniker, Franziska; Scholtès, Caroline; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Hirsch, Hans H; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Wandeler, Gilles; Zoulim, Fabien; Rauch, Andri (2024). Circulating HBV RNA and hepatitis B core-related antigen trajectories in persons with HIV/HBV coinfection and HBsAg loss on tenofovir therapy. (In Press). The journal of infectious diseases Oxford University Press 10.1093/infdis/jiae189
Begré, Lorin; Boyd, Anders; Salazar-Vizcaya, Luisa; Suter, Franziska; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Zoulim, Fabien; Wandeler, Gilles; Rauch, Andri (2024). Long-term quantitative hepatitis B surface antigen (HBsAg) trajectories in persons with and without HBsAg loss on tenofovir-containing antiretroviral therapy. HIV medicine, 25(2), pp. 291-298. Wiley 10.1111/hiv.13561
Mugglin, Catrina; Hamusonde, Kalongo; Salazar-Vizcaya, Luisa; Kusejko, Katharina; Nicca, Dunja; Haerry, David; Braun, Dominique L; Stoeckle, Marcel; Kouyos, Roger; Calmy, Alexandra; Cavassini, Matthias; Cipriani, Michela; Bernasconi, Enos; Rauch, Andri; Hachfeld, Anna (2023). Sexual Behaviour and STI Incidence in Sexually Active MSM Living With HIV in Times of COVID-19. Open Forum Infectious Diseases, 10(8), ofad399. Oxford University Press 10.1093/ofid/ofad399
Haas, Andreas D; Lienhard, Raphael; Didden, Christiane; Cornell, Morna; Folb, Naomi; Boshomane, Tebatso M G; Salazar-Vizcaya, Luisa; Ruffieux, Yann; Nyakato, Patience; Wettstein, Anja E; Tlali, Mpho; Davies, Mary-Ann; von Groote, Per; Wainberg, Milton; Egger, Matthias; Maartens, Gary; Joska, John A (2023). Mental Health, ART Adherence, and Viral Suppression Among Adolescents and Adults Living with HIV in South Africa: A Cohort Study. AIDS and behavior, 27(6), pp. 1849-1861. Springer 10.1007/s10461-022-03916-x
Hamusonde, Kalongo; Nicca, Dunja; Günthard, Huldrych F; Stöckle, Marcel; Darling, Katharine Ea; Calmy, Alexandra; Bernasconi, Enos; Haerry, David; Schmid, Patrick; Kouyos, Roger D; Rauch, Andri; Salazar-Vizcaya, Luisa (2023). Triggers of change in sexual behavior among people with HIV: The Swiss U = U statement and Covid-19 compared. The journal of infectious diseases, 227(3), pp. 407-411. Oxford University Press 10.1093/infdis/jiac459
Atkinson, Andrew; Ellenberger, Benjamin; Piezzi, Vanja; Kaspar, Tanja; Salazar-Vizcaya, Luisa; Endrich, Olga; Leichtle, Alexander B; Marschall, Jonas (2023). Extending outbreak investigation with machine learning and graph theory: Benefits of new tools with application to a nosocomial outbreak of a multidrug-resistant organism. Infection control and hospital epidemiology, 44(2), pp. 246-252. Cambridge University Press 10.1017/ice.2022.66
Kusejko, Katharina; Salazar-Vizcaya, Luisa; Shah, Cyril; Stöckle, Marcel; Béguelin, Charles; Schmid, Patrick; Ongaro, Marie; Darling, Katherine; Bernasconi, Enos; Rauch, Andri; Kouyos, Roger D; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S; Braun, Dominique L (2022). Sustained effect on hepatitis C elimination among men who have sex with men in the Swiss HIV Cohort Study: A systematic re-screening for hepatitis C RNA two years following a nation-wide elimination program. Clinical infectious diseases, 75(10), pp. 1723-1731. Oxford University Press 10.1093/cid/ciac273
Andresen, Sara; Balakrishna, Suraj; Mugglin, Catrina; Schmidt, Axel J; Braun, Dominique L; Marzel, Alex; Doco Lecompte, Thanh; Darling, Katharine Ea; Roth, Jan A; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D; Salazar-Vizcaya, Luisa (2022). Unsupervised machine learning predicts future sexual behaviour and sexually transmitted infections among HIV-positive men who have sex with men. PLoS computational biology, 18(10), e1010559. Public Library of Science 10.1371/journal.pcbi.1010559
Salazar-Vizcaya, Luisa; Atkinson, Andrew; Kronenberg, Andreas; Plüss-Suard, Catherine; Kouyos, Roger D; Kachalov, Viacheslav; Troillet, Nicolas; Marschall, Jonas; Sommerstein, Rami (2022). The impact of public health interventions on the future prevalence of ESBL-producing Klebsiella pneumoniae: a population based mathematical modelling study. BMC infectious diseases, 22(1), p. 487. BioMed Central 10.1186/s12879-022-07441-z
Salazar-Vizcaya, Luisa; Kusejko, Katharina; Günthard, Huldrych F; Böni, Jürg; Metzner, Karin J; Braun, Dominique L; Nicca, Dunja; Bernasconi, Enos; Calmy, Alexandra; Darling, Katharine E A; Wandeler, Gilles; Kouyos, Roger D; Rauch, Andri (2022). An Approach to Quantifying the Interaction between Behavioral and Transmission Clusters. Viruses, 14(4) MDPI 10.3390/v14040784
Braun, Dominique L; Hampel, Benjamin; Ledergerber, Bruno; Grube, Christina; Nguyen, Huyen; Künzler-Heule, Patrizia; Shah, Cyril; Salazar Vizcaya, Luisa; Conen, Anna; Flepp, Markus; Stöckle, Marcel; Béguelin, Charles; Schmid, Patrick; Rougemont, Mathieu; Delaloye, Julie; Bernasconi, Enos; Nicca, Dunja; Böni, Jürg; Rauch, Andri; Kouyos, Roger D; ... (2021). A treatment as prevention trial to eliminate hepatitis C among men who have sex with men living with HIV in the Swiss HIV Cohort Study. Clinical infectious diseases, 73(7), e2194-e2202. The University of Chicago Press 10.1093/cid/ciaa1124
Salazar-Vizcaya, Luisa; Balakrishna, Suraj; Schmidt, Axel J; Kachalov, Viacheslav; Kusejko, Katharina; Thurnheer, Maria Christine; Roth, Jan A; Nicca, Dunja; Cavassini, Matthias; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D (2021). Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS computational biology, 17(10), e1009529. Public Library of Science 10.1371/journal.pcbi.1009529
Kachalov, Viacheslav N; Nguyen, Huyen; Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Sommerstein, Rami; Kuster, Stefan P; Hauser, Anthony; Abel Zur Wiesch, Pia; Klein, Eili; Kouyos, Roger D (2021). Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS computational biology, 17(1), e1008446. Public Library of Science 10.1371/journal.pcbi.1008446
Carlisle, Louisa A; Turk, Teja; Metzner, Karin J; Mbunkah, Herbert A; Shah, Cyril; Böni, Jürg; Huber, Michael; Braun, Dominique L; Fehr, Jan; Salazar-Vizcaya, Luisa; Rauch, Andri; Yerly, Sabine; Nguyen, Aude; Cavassini, Matthias; Stoeckle, Marcel; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D (2020). HCV Genetic Diversity Can Be Used to Infer Infection Recency and Time since Infection. Viruses, 12(11) MDPI 10.3390/v12111241
Kusejko, Katharina; Salazar Vizcaya, Luisa; Braun, Dominique L; Tarr, Philip E; Bernasconi, Enos; Doco-Lecompte, Thanh; Cavassini, Matthias; Schmid, Patrick; Du Pasquier, Renaud; Hauser, Christoph; Günthard, Huldrych F; Kouyos, Roger D (2020). Self-reported neurocognitive impairment in people living with HIV: Characterizing clusters of patients with similar changes in self-reported neurocognitive impairment 2013-2017 in the Swiss HIV Cohort Study. Clinical infectious diseases, 71(3), pp. 637-644. Oxford University Press 10.1093/cid/ciz868
Salazar Vizcaya, Luisa Paola; Kusejko, Katharina; Schmidt, Axel J; Carrillo-Montoya, Germán; Nicca, Dunja; Wandeler, Gilles; Braun, Dominique L; Fehr, Jan; Darling, Katharine E A; Bernasconi, Enos; Schmid, Patrick; Günthard, Huldrych F; Kouyos, Roger D; Rauch, Andri (2020). Clusters of sexual behaviour in HIV-positive men who have sex with men reveal highly dissimilar time trends. Clinical infectious diseases, 70(3), pp. 416-424. Oxford University Press 10.1093/cid/ciz208
Boettiger, David C; Salazar Vizcaya, Luisa Paola; Dore, Gregory J; Gray, Richard T; Law, Matthew G; Callander, Denton; Lea, Toby; Rauch, Andri; Matthews, Gail V (2020). Can Australia reach the World Health Organization Hepatitis C elimination goal by 2025 among HIV-positive gay and bisexual men? Clinical infectious diseases, 70(1), pp. 106-113. Oxford University Press 10.1093/cid/ciz164
Salazar Vizcaya, Luisa Paola; Kouyos, Roger D; Metzner, Karin J; Caraballo Cortes, Kamila; Böni, Jürg; Shah, Cyril; Fehr, Jan; Braun, Dominique L; Bernasconi, Enos; Mbunkah, Herbert A; Hoffmann, Matthias; Labhardt, Niklaus; Cavassini, Matthias; Rougemont, Mathieu; Günthard, Huldrych F; Keiser, Olivia; Rauch, Andri (2019). Changing trends in international versus domestic HCV transmission in HIV-positive MSM: A perspective for the DAA scale-up era. The journal of infectious diseases, 220(1), pp. 91-99. Oxford University Press 10.1093/infdis/jiz069
Aebi-Popp, K; Wandeler, G; Salazar Vizcaya, L; Metzner, K; Stöckle, M; Cavassini, M; Hoffmann, M; Lüthi, A; Suter, F; Bernasconi, E; Fehr, J; Furrer, H; Rauch, A (2018). Rapid decline of anti-hepatitis C virus (HCV) antibodies following early treatment of incident HCV infections in HIV-infected men who have sex with men. HIV medicine, 19(6), pp. 420-425. Blackwell Science 10.1111/hiv.12602
Martin, Thomas C S; Rauch, Andri; Salazar Vizcaya, Luisa Paola; Martin, Natasha K (2018). Understanding and Addressing Hepatitis C Virus Reinfection Among Men Who Have Sex with Men. Infectious disease clinics of North America, 32(2), pp. 395-405. Elsevier 10.1016/j.idc.2018.02.004
Estill, Janne; Kerr, Cliff C; Blaser, Nello; Salazar-Vizcaya, Luisa; Tenthani, Lyson; Wilson, David P; Keiser, Olivia (2018). The Effect of Monitoring Viral Load and Tracing Patients Lost to Follow-up on the Course of the HIV Epidemic in Malawi: A Mathematical Model. Open Forum Infectious Diseases, 5(5), ofy092. Oxford University Press 10.1093/ofid/ofy092
Salazar-Vizcaya, Luisa; Kouyos, Roger D; Fehr, Jan; Braun, Dominique; Estill, Janne Anton Markus; Bernasconi, Enos; Delaloye, Julie; Stöckle, Marcel; Schmid, Patrick; Rougemont, Mathieu; Wandeler, Gilles; Günthard, Huldrych F; Keiser, Olivia; Rauch, Andri (2018). On the potential of a short-term intensive intervention to interrupt HCV transmission in HIV-positive men who have sex with men: a mathematical modelling study. Journal of viral hepatitis, 25(1), pp. 10-18. Blackwell Science 10.1111/jvh.12752
Salazar-Vizcaya, Luisa; Kouyos, Roger D; Zahnd, Cindy; Wandeler, Gilles; Battegay, Manuel; Darling, Katharine Elizabeth Ana; Bernasconi, Enos; Calmy, Alexandra; Vernazza, Pietro; Furrer, Hansjakob; Egger, Matthias; Keiser, Olivia; Rauch, Andri (2016). Hepatitis C virus transmission among HIV-infected men who have sex with men: Modeling the effect of behavioral and treatment interventions. Hepatology, 64(6), pp. 1856-1869. Wiley Interscience 10.1002/hep.28769
Haas, Andreas D; Msukwa, Malango T; Egger, Matthias; Tenthani, Lyson; Tweya, Hannock; Jahn, Andreas; Gadabu, Oliver J; Tal, Kali; Salazar Vizcaya, Luisa; Estill, Janne Anton Markus; Spoerri, Adrian; Phiri, Nozgechi; Chimbwandira, Frank; van Oosterhout, Joep J; Keiser, Olivia (2016). Adherence to Antiretroviral Therapy During and After Pregnancy: Cohort Study on Women Receiving Care in Malawi's "Option B+" programme. Clinical infectious diseases, 63(9), pp. 1227-35. Oxford University Press 10.1093/cid/ciw500
Zahnd, Cindy; Salazar-Vizcaya, Luisa; Dufour, Jean-François; Müllhaupt, Beat; Wandeler, Gilles; Kouyos, Roger; Estill, Janne; Bertisch, Barbara; Rauch, Andri; Keiser, Olivia (2016). Modelling the impact of deferring HCV treatment on liver-related complications in HIV coinfected men who have sex with men. Journal of hepatology, 65(1), pp. 26-32. Elsevier 10.1016/j.jhep.2016.02.030
Estill, Janne Anton Markus; Ford, Nathan; Salazar-Vizcaya, Luisa; Haas, Andreas D; Blaser, Nello; Habiyambere, Vincent; Keiser, Olivia (2016). The need for second-line antiretroviral therapy in adults in sub-Saharan Africa up to 2030: a mathematical modelling study. The Lancet HIV, 3(3), e132-e139. Elsevier 10.1016/S2352-3018(16)00016-3
Blaser, Nello; Zahnd, Cindy; Hermans, Sabine; Salazar-Vizcaya, Luisa; Estill, Janne; Morrow, Carl; Egger, Matthias; Keiser, Olivia; Wood, Robin (2016). Tuberculosis in Cape Town: An age-structured transmission model. Epidemics, 14, pp. 54-61. Elsevier 10.1016/j.epidem.2015.10.001
Blaser, Nello; Vizcaya Salazar, Luisa; Estill, Janne; Zahnd, Cindy; Kalesan, Bindu; Egger, Matthias; Gsponer, Thomas; Keiser, Olivia (2015). gems: An R Package for Simulating from Disease Progression Models. Journal of statistical software, 64(10), pp. 1-22. UCLA Statistics
Wandeler, Gilles; Schlauri, Marion; Jaquier, Marie-Eve; Rohrbach, Janine; Metzner, Karin J; Fehr, Jan; Ambrosioni, Juan; Cavassini, Matthias; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Keiser, Olivia; Salazar-Vizcaya, Luisa; Furrer, Hansjakob; Rauch, Andri (2015). Incident Hepatitis C Virus Infections in the Swiss HIV Cohort Study: Changes in Treatment Uptake and Outcomes Between 1991 and 2013. Open Forum Infectious Diseases, 2(1), ofv026. Oxford University Press 10.1093/ofid/ofv026
Estill, Janne Anton Markus; Salazar-Vizcaya, Luisa; Blaser, Nello; Egger, Matthias; Keiser, Olivia (2015). The Cost-Effectiveness of Monitoring Strategies for Antiretroviral Therapy of HIV Infected Patients in Resource-Limited Settings: Software Tool. PLoS ONE, 10(3), e0119299. Public Library of Science 10.1371/journal.pone.0119299
Salazar-Vizcaya, Luisa; Keiser, Olivia; Technau, Karl; Davies, Mary-Ann; Haas, Andreas D; Blaser, Nello; Cox, Vivian; Eley, Brian; Rabie, Helena; Moultrie, Harry; Giddy, Janet; Wood, Robin; Egger, Matthias; Estill, Janne (2014). Viral load versus CD4⁺ monitoring and 5-year outcomes of antiretroviral therapy in HIV-positive children in Southern Africa: a cohort-based modelling study. AIDS, 28(16), pp. 2451-2460. Lippincott Williams & Wilkins 10.1097/QAD.0000000000000446
Blaser, Nello; Wettstein, Celina; Estill, Janne Anton Markus; Vizcaya, Luisa Salazar; Wandeler, Gilles; Egger, Matthias; Keiser, Olivia (2014). Impact of viral load and the duration of primary infection on HIV transmission. AIDS, 28(7), pp. 1021-1029. Lippincott Williams & Wilkins 10.1097/QAD.0000000000000135
Estill, Janne; Tweya, Hannock Mukoma; Egger, Matthias; Wandeler, Gilles; Feldacker, Caryl; Johnson, Leigh F.; Blaser, Nello; Vizcaya, Luisa Salazar; Phiri, Sam; Keiser, Olivia (2014). Tracing of patients lost to follow-up and HIV transmission: Mathematical modelling study based on two large ART programmes in Malawi. Journal of acquired immune deficiency syndromes JAIDS, 65(5), e179-e186. Lippincott Williams & Wilkins 10.1097/QAI.0000000000000075
Keebler, Daniel; Revill, Paul; Braithwaite, Scott; Phillips, Andrew; Blaser, Nello; Borquez, Annick; Cambiano, Valentina; Ciaranello, Andrea; Estill, Janne Anton Markus; Gray, Richard; Hill, Andrew; Keiser, Olivia; Kessler, Jason; Menzies, Nicolas A; Nucifora, Kimberly A; Vizcaya, Luisa Salazar; Walker, Simon; Welte, Alex; Easterbrook, Philippa; Doherty, Meg; ... (2014). Cost-effectiveness of different strategies to monitor adults on antiretroviral treatment: a combined analysis of three mathematical models. The Lancet Global Health, 2(1), e35-e43. Elsevier 10.1016/S2214-109X(13)70048-2
Estill, Janne; Egger, Matthias; Blaser, Nello; Vizcaya, Luisa Salazar; Garone, Daniela; Wood, Robin; Campbell, Jennifer; Hallett, Timothy B.; Keiser, Olivia (2013). Cost-effectiveness of point-of-care viral load monitoring of antiretroviral therapy in resource-limited settings: mathematical modelling study. AIDS, 27(9), pp. 1483-1492. Lippincott Williams & Wilkins 10.1097/QAD.0b013e328360a4e5
