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Telenti, Amalio; Hodcroft, Emma B; Robertson, David L (2022). The Evolution and Biology of SARS-CoV-2 Variants. Cold Spring Harbor perspectives in medicine, 12(5), a041390. Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a041390
Benet, Susana; Gálvez, Cristina; Drobniewski, Francis; Kontsevaya, Irina; Arias, Lilibeth; Monguió-Tortajada, Marta; Erkizia, Itziar; Urrea, Victor; Ong, Ruo-Yan; Luquin, Marina; Dupont, Maeva; Chojnacki, Jakub; Dalmau, Judith; Cardona, Paula; Neyrolles, Olivier; Lugo-Villarino, Geanncarlo; Vérollet, Christel; Julián, Esther; Furrer, Hansjakob; Günthard, Huldrych F; ... (2021). Dissemination of Mycobacterium tuberculosis is associated to a SIGLEC1 null variant that limits antigen exchange via trafficking extracellular vesicles. Journal of extracellular vesicles, 10(3), e12046. Taylor & Francis 10.1002/jev2.12046
McLaren, Paul J; Raisaro, Jean Louis; Aouri, Manel; Rotger, Margalida; Ayday, Erman; Bartha, István; Delgado, Maria B; Vallet, Yannick; F Günthard, Huldrych; Cavassini, Matthias; Furrer, Hansjakob; Doco-Lecompte, Thanh; Marzolini, Catia; Schmid, Patrick; Di Benedetto, Caroline; Decosterd, Laurent A; Fellay, Jacques; Hubaux, Jean-Pierre; Telenti, Amalio (2016). Privacy-preserving genomic testing in the clinic: a model using HIV treatment. Genetics in medicine, 18(8), pp. 814-822. Palgrave Macmillan 10.1038/gim.2015.167
Perkins, Molly R; Bartha, Istvan; Timmer, J Katherina; Liebner, Julia C; Wollinsky, David; Günthard, Huldrych F; Hauser, Christoph; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Telenti, Amalio; Douek, Daniel C; Fellay, Jacques (2015). The interplay between host genetic variation, viral replication and microbial translocation in untreated HIV-infected individuals. Journal of infectious diseases, 212(4), pp. 578-584. Oxford University Press 10.1093/infdis/jiv089
Regoes, Roland R; McLaren, Paul J; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Günthard, Huldrych F; Hoffmann, Matthias; Rauch, Andri; Telenti, Amalio; Fellay, Jacques (2014). Disentangling human tolerance and resistance against HIV. PLoS biology, 12(9), e1001951. Public Library of Science 10.1371/journal.pbio.1001951
Guidi, Monia; Foletti, Giuseppe; McLaren, Paul; Cavassini, Matthias; Rauch, Andri; Tarr, Philip E; Lamy, Olivier; Panchaud, Alice; Telenti, Amalio; Csajka, Chantal; Rotger, Margalida (2014). Vitamin D time profile based on the contribution of non-genetic and genetic factors in HIV-infected individuals of European ancestry. Antiviral therapy, 20(3), pp. 261-269. International Medical Press 10.3851/IMP2823
Dalmau, Judith; Rotger, Margalida; Erkizia, Itziar; Rauch, Andri; Reche, Pedro; Pino, Maria; Esteve, Anna; Palou, Eduard; Brander, Christian; Paredes, Roger; Phung, Pham; Clotet, Bonaventura; Telenti, Amalio; Martinez-Picado, Javier; Prado, Julia G.; Study Group, CoRP (2014). Highly pathogenic adapted HIV-1 strains limit host immunity and dictate rapid disease progression. AIDS, 28(9), pp. 1261-1272. Lippincott Williams & Wilkins 10.1097/QAD.0000000000000293
Aouri, Manel; Calmy, Alexandra; Hirschel, Bernard; Telenti, Amalio; Buclin, Thierry; Cavassini, Matthias; Rauch, Andri; Decosterd, Laurent A. (2013). A validated assay by liquid chromatography-tandem mass spectrometry for the simultaneous quantification of elvitegravir and rilpivirine in HIV positive patients. Journal of mass spectrometry, 48(5), pp. 616-625. Wiley 10.1002/jms.3200
Lubomirov, Rubin; Arab-Alameddine, Mona; Rotger, Margalida; Fayet-Mello, Aurélie; Martinez, Raquel; Guidi, Monia; di Iulio, Julia; Cavassini, Matthias; Günthard, Huldrych F.; Furrer, Hansjakob; Marzolini, Catia; Bernasconi, Enos; Calmy, Alexandra; Buclin, Thierry; Decosterd, Laurent A.; Csajka, Chantal; Telenti, Amalio (2013). Pharmacogenetics-based population pharmacokinetic analysis of etravirine in HIV-1 infected individuals. Pharmacogenetics and genomics, 23(1), pp. 9-18. Lippincott Williams & Wilkins 10.1097/FPC.0b013e32835ade82
Lane, Jérôme; McLaren, Paul J.; Dorrell, Lucy; Shianna, Kevin V.; Stemke, Amanda; Pelak, Kimberly; Moore, Stephen; Oldenburg, Johannes; Boehlen, Francoise; Alvarez-Roman, Maria Teresa; Angelillo-Scherrer, Anne; Bolton-Maggs, Paula H. B.; Brand, Brigit; Brown, Deborah; Chiang, Elaine; Cid-Haro, Ana Rosa; Clotet, Bonaventura; Collins, Peter; Colombo, Sara; Dalmau, Judith; ... (2013). A genome-wide association study of resistance to HIV infection in highly exposed uninfected individuals with hemophilia A. Human molecular genetics, 22(9), pp. 1903-1910. Oxford University Press 10.1093/hmg/ddt033
Glass, Tracy R; Rotger, Margalida; Telenti, Amalio; Decosterd, Laurent; Csajka, Chantal; Bucher, Heiner C; Günthard, Huldrych F; Rickenbach, Martin; Nicca, Dunja; Hirschel, Bernard; Bernasconi, Enos; Wandeler, Gilles; Battegay, Manuel; Marzolini, Catia; Swiss HIV Cohort Study, (2012). Determinants of sustained viral suppression in HIV-infected patients with self-reported poor adherence to antiretroviral therapy. PLoS ONE, 7(1), e29186. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0029186
Zuercher, Emilie; Butticaz, Christophe; Wyniger, Josiane; Martinez, Raquel; Battegay, Manuel; Boffi El Amari, Emmanuelle; Dang, Thanh; Egger, Jean-François; Fehr, Jan; Mueller-Garamvögyi, Esther; Parini, Andrea; Schaefer, Stephan C; Schoeni-Affolter, Franziska; Thurnheer, Christine; Tinguely, Marianne; Telenti, Amalio; Rothenberger, Sylvia; Swiss HIV Cohort Study, (2012). Genetic diversity of EBV-encoded LMP1 in the Swiss HIV Cohort Study and implication for NF-Κb activation. PLoS ONE, 7(2), e32168. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0032168
Lubomirov, Rubin; Colombo, Sara; di Iulio, Julia; Ledergerber, Bruno; Martinez, Raquel; Cavassini, Matthias; Hirschel, Bernard; Bernasconi, Enos; Elzi, Luigia; Vernazza, Pietro; Furrer, Hansjakob; Günthard, Huldrych F; Telenti, Amalio; Swiss HIV Cohort Study, (2011). Association of pharmacogenetic markers with premature discontinuation of first-line anti-HIV therapy: an observational cohort study. Journal of infectious diseases, 203(2), pp. 246-57. Cary, N.C.: Oxford University Press 10.1093/infdis/jiq043
Buclin, Thierry; Telenti, Amalio; Perera, Rafael; Csajka, Chantal; Furrer, Hansjakob; Aronson, Jeffrey K.; Glasziou, Paul P. (2011). Development and validation of decision rules to guide frequency of monitoring CD4 cell count in HIV-1 infection before starting antiretroviral therapy. PLoS ONE, 6(4), e18578. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0018578
di Iulio, Julia; Ciuffi, Angela; Fitzmaurice, Karen; Kelleher, Dermot; Rotger, Margalida; Fellay, Jacques; Martinez, Raquel; Pulit, Sara; Furrer, Hansjakob; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard; Barnes, Eleanor; Klenerman, Paul; Telenti, Amalio; Rauch, Andri; Swiss HIV Cohort Study, (2011). Estimating the net contribution of interleukin-28B variation to spontaneous hepatitis C virus clearance. Hepatology, 53(5), pp. 1446-54. Hoboken, N.J.: Wiley Interscience 10.1002/hep.24263
Ortiz, Millán; Poloni, Estella S; Furrer, Hansjakob; Kovari, Helen; Martinez, Raquel; Arnedo, Mireia; Elzi, Luigia; Bernasconi, Enos; Vernazza, Pietro; Hirschel, Bernard; Cavassini, Matthias; Ledergerber, Bruno; Günthard, Huldrych F; Telenti, Amalio; Tarr, Philip E; Swiss HIV Cohort Study, (2011). No longitudinal mitochondrial DNA sequence changes in HIV-infected individuals with and without lipoatrophy. Journal of infectious diseases, 203(5), pp. 620-4. Cary, N.C.: Oxford University Press 10.1093/infdis/jiq106
Rotger, Margalida; Dalmau, Judith; Rauch, Andri; McLaren, Paul; Bosinger, Steven E; Martinez, Raquel; Sandler, Netanya G; Roque, Annelys; Liebner, Julia; Battegay, Manuel; Bernasconi, Enos; Descombes, Patrick; Erkizia, Itziar; Fellay, Jacques; Hirschel, Bernard; Miró, Jose M; Palou, Eduard; Hoffmann, Matthias; Massanella, Marta; Blanco, Julià; ... (2011). Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque. Journal of clinical investigation, 121(6), pp. 2391-400. Ann Arbor, Mich.: American Society for Clinical Investigation 10.1172/JCI45235
Rotger, Margalida; Gsponer, Thomas; Martinez, Raquel; Taffé, Patrick; Elzi, Luigia; Vernazza, Pietro; Cavassini, Matthias; Bernasconi, Enos; Hirschel, Bernard; Furrer, Hansjakob; Weber, Rainer; Ledergerber, Bruno; Egger, Matthias; Telenti, Amalio; Tarr, Philip E (2010). Impact of single nucleotide polymorphisms and of clinical risk factors on new-onset diabetes mellitus in HIV-infected individuals. Clinical infectious diseases, 51(9), pp. 1090-1098. Cary, N.C.: The University of Chicago Press 10.1086/656630
Rohrbach, Janine; Robinson, Nicola; Harcourt, Gillian; Hammond, Emma; Gaudieri, Silvana; Gorgievski, Meri; Telenti, Amalio; Keiser, Olivia; Günthard, Huldrych F; Hirschel, Bernhard; Hoffmann, Matthias; Bernasconi, Enos; Battegay, Manuel; Furrer, Hansjakob; Klenerman, Paul; Rauch, Andri (2010). Cellular immune responses to HCV core increase and HCV RNA levels decrease during successful antiretroviral therapy. Gut, 59(9), pp. 1252-1258. London: BMJ Publishing Group 10.1136/gut.2009.205971
Alizon, Samuel; von Wyl, Viktor; Stadler, Tanja; Kouyos, Roger D; Yerly, Sabine; Hirschel, Bernard; Böni, Jürg; Shah, Cyril; Klimkait, Thomas; Furrer, Hansjakob; Rauch, Andri; Vernazza, Pietro L; Bernasconi, Enos; Battegay, Manuel; Bürgisser, Philippe; Telenti, Amalio; Günthard, Huldrych F; Bonhoeffer, Sebastian; Swiss HIV Cohort Study, (2010). Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS pathogens, 6(9), e1001123. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1001123
Lubomirov, Rubin; di Iulio, Julia; Fayet, Aurélie; Colombo, Sara; Martinez, Raquel; Marzolini, Catia; Furrer, Hansjakob; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Ledergerber, Bruno; Rentsch, Katharina; Descombes, Patrick; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal; Telenti, Amalio; Swiss HIV Cohort Study, (2010). ADME pharmacogenetics: investigation of the pharmacokinetics of the antiretroviral agent lopinavir coformulated with ritonavir. Pharmacogenetics and genomics, 20(4), pp. 217-30. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e328336eee4
Rauch, Andri; Kutalik, Zoltán; Descombes, Patrick; Cai, Tao; Di Iulio, Julia; Mueller, Tobias; Bochud, Murielle; Battegay, Manuel; Bernasconi, Enos; Borovicka, Jan; Colombo, Sara; Cerny, Andreas; Dufour, Jean-François; Furrer, Hansjakob; Günthard, Huldrych F; Heim, Markus; Hirschel, Bernard; Malinverni, Raffaele; Moradpour, Darius; Müllhaupt, Beat; ... (2010). Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study. Gastroenterology, 138(4), 1338-45, 1345.e1-7. Philadelphia, Pa.: Elsevier 10.1053/j.gastro.2009.12.056
Casado, Concepción; Colombo, Sara; Rauch, Andri; Martínez, Raquel; Günthard, Huldrych F; Garcia, Soledad; Rodríguez, Carmen; Del Romero, Jorge; Telenti, Amalio; López-Galíndez, Cecilio (2010). Host and viral genetic correlates of clinical definitions of HIV-1 disease progression. PLoS ONE, 5(6), e11079. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0011079
Rotger, Margalida; Bayard, Cornelia; Taffé, Patrick; Martinez, Raquel; Cavassini, Matthias; Bernasconi, Enos; Battegay, Manuel; Hirschel, Bernard; Furrer, Hansjakob; Witteck, Andrea; Weber, Rainer; Ledergerber, Bruno; Telenti, Amalio; Tarr, Philip E (2009). Contribution of genome-wide significant single-nucleotide polymorphisms and antiretroviral therapy to dyslipidemia in HIV-infected individuals: a longitudinal study. Circulation - cardiovascular genetics, 2(6), pp. 621-8. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1161/CIRCGENETICS.109.874412
di Iulio, Julia; Fayet, Aurélie; Arab-Alameddine, Mona; Rotger, Margalida; Lubomirov, Rubin; Cavassini, Matthias; Furrer, Hansjakob; Günthard, Huldrych F; Colombo, Sara; Csajka, Chantal; Eap, Chin B; Decosterd, Laurent A; Telenti, Amalio (2009). In vivo analysis of efavirenz metabolism in individuals with impaired CYP2A6 function. Pharmacogenetics and genomics, 19(4), pp. 300-9. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e328328d577
Colombo, Sara; Rauch, Andri; Rotger, Margalida; Fellay, Jacques; Martinez, Raquel; Fux, Christoph; Thurnheer, Christine; Günthard, Huldrych F; Goldstein, David B; Furrer, Hansjakob; Telenti, Amalio (2008). The HCP5 single-nucleotide polymorphism: a simple screening tool for prediction of hypersensitivity reaction to abacavir. Journal of infectious diseases, 198(6), pp. 864-7. Cary, N.C.: The University of Chicago Press 10.1086/591184
Rauch, Andri; Nolan, David; Furrer, Hansjakob; McKinnon, Elizabeth; John, Mina; Mallal, Simon; Gaudieri, Silvana; Günthard, Huldrych F; Schmid, Patrick; Battegay, Manuel; Hirschel, Bernard; Telenti, Amalio; James, Ian (2008). HLA-Bw4 homozygosity is associated with an impaired CD4 T cell recovery after initiation of antiretroviral therapy. Clinical infectious diseases, 46(12), pp. 1921-5. Cary, N.C.: The University of Chicago Press 10.1086/588479
Telenti, Amalio; Egger, Matthias (2007). Identifying safety concerns from genetic data: lessons from the development of CCR5 inhibitors. Antiviral therapy, 12(2), pp. 147-8. London: International Medical Press
Keiser, Olivia; Fellay, Jacques; Opravil, Milos; Hirsch, Hans H; Hirschel, Bernard; Bernasconi, Enos; Vernazza, Pietro L; Rickenbach, Martin; Telenti, Amalio; Furrer, Hansjakob (2007). Adverse events to antiretrovirals in the Swiss HIV Cohort Study: effect on mortality and treatment modification. Antiviral therapy, 12(8), pp. 1157-64. London: International Medical Press
Rotger, Margalida; Colombo, Sara; Furrer, Hansjakob; Décosterd, Laurent; Buclin, Thierry; Telenti, Amalio (2007). Does tenofovir influence efavirenz pharmacokinetics? Antiviral therapy, 12(1), pp. 115-8. London: International Medical Press
Gaudieri, Silvana; Rauch, Andri; Park, Lawrence P; Freitas, Elizabeth; Herrmann, Susan; Jeffrey, Gary; Cheng, Wendy; Pfafferott, Katja; Naidoo, Kiloshni; Chapman, Russell; Battegay, Manuel; Weber, Rainer; Telenti, Amalio; Furrer, Hansjakob; James, Ian; Lucas, Michaela; Mallal, Simon A (2006). Evidence of viral adaptation to HLA class I-restricted immune pressure in chronic hepatitis C virus infection. Journal of virology, 80(22), pp. 11094-104. Baltimore: American Society for Microbiology 10.1128/JVI.00912-06
Bleiber, Gabriela; May, Margaret; Suarez, Carlos; Martinez, Raquel; Marzolini, Catia; Egger, Matthias; Telenti, Amalio (2004). MDR1 Genetic Polymorphism Does Not Modify either Cell Permissiveness to HIV-1 or Disease Progression before Treatment. Journal of infectious diseases, 189(4), pp. 583-586. The University of Chicago Press 10.1086/380134
Eigenmann, Christina; Flepp, Markus; Bernasconi, Enos; Schiffer, Veronique; Telenti, Amalio; Bucher, Heiner; Wagels, Thomas; Egger, Martin; Furrer, Hansjakob (2003). Low Incidence of Community-Acquired Pneumonia among Human Immunodeficiency Virus-Infected Patients after Interruption of Pneumocystis carinii Pneumonia Prophylaxis. Clinical infectious diseases, 36(7), pp. 917-921. The University of Chicago Press 10.1086/368190
Bodmer, Thomas; Zürcher, Gabriela; Imboden, Paul; Telenti, Amalio (1995). Mutation position and type of substitution in the β-subunit of the RNA polymerase influence in-vitro activity of rifamycins in rifampicin-resistant Mycobacterium tuberculosis. Journal of antimicrobial chemotherapy, 35(2), pp. 345-348. Oxford University Press 10.1093/jac/35.2.345
