09 Interdisciplinary Units > Next Generation Sequencing (NGS) Platform

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Number of items at this level: 91.

2024

Safari, Fatemeh; Yeoh, Wen Jie; Perret-Gentil, Saskia; Klenke, Frank; Dolder, Silvia; Hofstetter, Wilhelm; Krebs, Philippe (2024). SHIP1 deficiency causes inflammation-dependent retardation in skeletal growth. Life science alliance, 7(5) EMBO Press 10.26508/lsa.202302297

Kaelin, Christopher B; McGowan, Kelly A; Hutcherson, Anthony D; Delay, John M; Li, Jeremiah H; Kiener, Sarah; Jagannathan, Vidhya; Leeb, Tosso; Murphy, William J; Barsh, Gregory S (2024). Ancestry dynamics and trait selection in a designer cat breed. Current biology, 34(7), 1506-1518.e7. Cell Press 10.1016/j.cub.2024.02.075

Sage, Sophie E.; Leeb, Tosso; Jagannathan, Vidhya; Gerber, Vinzenz (2024). Single-cell profiling of bronchoalveolar cells reveals a Th17 signature in neutrophilic severe equine asthma. Immunology, 171(4), pp. 549-565. Wiley-Blackwell 10.1111/imm.13745

Kiener, Sarah; Åhman, Susanne; Cikota, Robert; Jagannathan, Vidhya; Blatter, Sohvi; Cvitas, Iva; Soto, Sara; Leeb, Tosso (2024). Heterozygous ASPRV1 frameshift variant in a Pembroke Welsh Corgi with ichthyosis. (In Press). Animal genetics Wiley 10.1111/age.13423

Christen, Matthias; Gregor, Anne; Gutierrez-Quintana, Rodrigo; Bongers, Jos; Rupp, Angie; Penderis, Jacques; Shelton, G Diane; Jagannathan, Vidhya; Zweier, Christiane; Leeb, Tosso (2024). NDUFS7 variant in dogs with Leigh syndrome and its functional validation in a Drosophila melanogaster model. Scientific Reports, 14(2975) Nature Publishing Group 10.1038/s41598-024-53314-7

Rawson, Faye; Christen, Matthias; Rose, Jeremy; Paran, Emilie; Leeb, Tosso; Fadda, Angela (2024). Polioencephalopathy in Eurasier dogs. Journal of veterinary internal medicine, 38(1), pp. 277-284. Wiley 10.1111/jvim.16945

2023

Donà, Valentina; Nordmann, Patrice; Kittl, Sonja; Schuller, Simone; Bouvier, Maxime; Poirel, Laurent; Endimiani, Andrea; Perreten, Vincent (2023). Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss companion animal clinic and their genetic relationship to clinical human isolates. The journal of antimicrobial chemotherapy, 78(12), pp. 2950-2960. Oxford University Press 10.1093/jac/dkad337

Kiener, Sarah; Åhman, Susanne; Jagannathan, Vidhya; Soto, Sara; Leeb, Tosso (2023). Heterozygous KRT10 missense variant in a Chihuahua with severe epidermolytic ichthyosis. Animal genetics, 54(5), pp. 652-654. Wiley 10.1111/age.13341

Simon, Rebecca; Kiener, Sarah; Thom, Nina; Schäfer, Laura; Müller, Janina; Schlohsarczyk, Elfi K; Gärtner, Ulrich; Herden, Christiane; Leeb, Tosso; Lühken, Gesine (2023). Identification of an ADAMTS2 frameshift variant in a cat family with Ehlers-Danlos syndrome. G3 Genes Genomes Genetics, 13(9) Genetics Society of America 10.1093/g3journal/jkad152

Marchionatti, Emma; Perreten, Vincent (2023). Novel macrolide-lincosamide-streptogramin B resistance gene erm(56) in Trueperella pyogenes. mSphere, 8(4), e0023923. American Society for Microbiology 10.1128/msphere.00239-23

Brunetti, Barbara; Bacci, Barbara; Abbate, Jessica Maria; Tura, Giorgia; Paciello, Orlando; Vaccaro, Emanuela; Prisco, Francesco; Gandini, Gualtiero; Okonji, Samuel; Paola, Andrea di; Letko, Anna; Drögemüller, Cord; Jagannathan, Vidhya; Turba, Maria Elena; Ogundipe, Tolulope Grace; Lorenzini, Luca; Rosati, Marco; Psalla, Dimitra; Leeb, Tosso and Drögemüller, Michaela (2023). SGCD Missense Variant in a Lagotto Romagnolo Dog with Autosomal Recessively Inherited Limb-Girdle Muscular Dystrophy. Genes, 14(8) MDPI, Molecular Diversity Preservation International 10.3390/genes14081641

Meadows, Jennifer R S; Kidd, Jeffrey M; Wang, Guo-Dong; Parker, Heidi G; Schall, Peter Z; Bianchi, Matteo; Christmas, Matthew J; Bougiouri, Katia; Buckley, Reuben M; Hitte, Christophe; Nguyen, Anthony K; Wang, Chao; Jagannathan, Vidhya; Niskanen, Julia E; Frantz, Laurent A F; Arumilli, Meharji; Hundi, Sruthi; Lindblad-Toh, Kerstin; Ginja, Catarina; Agustina, Kadek Karang; ... (2023). Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture. Genome biology, 24(1), p. 187. BioMed Central Ltd. 10.1186/s13059-023-03023-7

Christen, Matthias; Zdora, Isabel; Leschnik, Michael; Jagannathan, Vidhya; Puff, Christina; Hünerfauth, Enrice; Volk, Holger A; Baumgärtner, Wolfgang; Koch, Tessa C; Schäfer, Wencke; Kleiter, Miriam; Leeb, Tosso (2023). RALGAPA1 Deletion in Belgian Shepherd Dogs with Cerebellar Ataxia. Genes, 14(8) MDPI, Molecular Diversity Preservation International 10.3390/genes14081520

Ennis, Sarah; Conforte, Alessandra; O'Reilly, Eimear; Takanlu, Javid Sabour; Cichocka, Tatiana; Dhami, Sukhraj Pal; Nicholson, Pamela; Krebs, Philippe; Ó Broin, Pilib; Szegezdi, Eva (2023). Cell-cell interactome of the hematopoietic niche and its changes in acute myeloid leukemia. iScience, 26(6), p. 106943. Elsevier 10.1016/j.isci.2023.106943

Drögemüller, Michaela; Klein, Nadine; Steffensen, Rikke Lill; Keiner, Miriam; Jagannathan, Vidhya; Leeb, Tosso (2023). PKD1 Nonsense Variant in a Lagotto Romagnolo Family with Polycystic Kidney Disease. Genes, 14(6) MDPI, Molecular Diversity Preservation International 10.3390/genes14061210

Aebi, Cindy Bianca; Fernandez, Javier Eduardo; Kittl, Sonja Cornelia; Tresch, Milena Laura; Perreten, Vincent; Overesch, Gudrun (2023). Characterization of third-generation cephalosporin-resistant Escherichia coli from slaughter calves and fattening pigs: A pilot study for monitoring antimicrobial resistance by whole genome sequencing in Switzerland. Schweizer Archiv für Tierheilkunde, 165(6), pp. 372-384. Gesellschaft Schweizer Tierärztinnen und Tierärzte 10.17236/sat00396

Lourdes Frehner, Bianca; Christen, Matthias; Reichler, Iris M; Jagannathan, Vidhya; Novacco, Marilisa; Riond, Barbara; Peters, Laureen M; Suárez Sánchez-Andrade, José; Pieńkowska-Schelling, Aldona; Schelling, Claude; Kipar, Anja; Leeb, Tosso; Balogh, Orsolya (2023). Autosomal recessive hyposegmentation of granulocytes in Australian Shepherd Dogs indicates a role for LMBR1L in myeloid leukocytes. PLoS genetics, 19(6), e1010805. Public Library of Science 10.1371/journal.pgen.1010805

Wang, Xuejing; Peischl, Stephan; Heckel, Gerald (2023). Demographic history and genomic consequences of 10,000 generations of isolation in a wild mammal. Current biology, 33(10), 2051-2062.e4. Cell Press 10.1016/j.cub.2023.04.042

Gutierrez-Quintana, Rodrigo; Christen, Matthias; Faller, Kiterie M E; Guevar, Julien; Jagannathan, Vidhya; Leeb, Tosso (2023). Response to letter regarding "SCN9A variant in a family of mixed breed dogs with congenital insensitivity to pain". Journal of veterinary internal medicine, 37(3), p. 793. Wiley 10.1111/jvim.16707

Kiener, Sarah; McMahill, Barbara G; Affolter, Verena K; Welle, Monika; Yager, Julie A; Jagannathan, Vidhya; Leeb, Tosso (2023). SOAT1 missense variant in two cats with sebaceous gland dysplasia. Molecular genetics and genomics : MGG, 298(4), pp. 837-843. Springer 10.1007/s00438-023-02020-6

Le Pennec, Guénolé; Retel, Cas; Kowallik, Vienna; Becks, Lutz; Feulner, Philine G D (2023). Demographic fluctuations and selection during host-parasite coevolution interactively increase genetic diversity. (In Press). Molecular Ecology Wiley-Blackwell 10.1111/mec.16939

Jenni, Sophia; Ludwig-Peisker, Odette; Jagannathan, Vidhya; Lapsina, Sandra; Stirn, Martina; Hofmann-Lehmann, Regina; Bogdanov, Nikolay; Schetle, Nelli; Giger, Urs; Leeb, Tosso; Bogdanova, Anna (2023). Methemoglobinemia, Increased Deformability and Reduced Membrane Stability of Red Blood Cells in a Cat with a CYB5R3 Splice Defect. Cells, 12(7) MDPI 10.3390/cells12070991

Letko, Anna; Hédan, Benoît; Snell, Anna; Harris, Alexander C; Jagannathan, Vidhya; Andersson, Göran; Holst, Bodil S; Ostrander, Elaine A; Quignon, Pascale; André, Catherine; Leeb, Tosso (2023). Genomic Diversity and Runs of Homozygosity in Bernese Mountain Dogs. Genes, 14(3) MDPI, Molecular Diversity Preservation International 10.3390/genes14030650

Christen, Matthias; Gonzalo-Nadal, Veronica; Kaczmarska, Adriana; Dyrka, Magdalena; Guevar, Julien; Jagannathan, Vidhya; Leeb, Tosso; Gutierrez-Quintana, Rodrigo (2023). A novel missense variant in the L2HGDH gene in a cat with L-2-hydroxyglutaric aciduria and multicystic cerebral lesions. Journal of veterinary internal medicine, 37(2), pp. 676-680. Wiley 10.1111/jvim.16675

Abitbol, Marie; Jagannathan, Vidhya; Lopez, Marie; Courtin, Ambre; Dufaure de Citres, Caroline; Gache, Vincent; Leeb, Tosso (2023). A CDH23 missense variant in Beauceron dogs with non-syndromic deafness. Animal genetics, 54(1), pp. 73-77. Wiley 10.1111/age.13273

Keller, Jennifer Eleonora; Schwendener, Sybille; Nováková, Dana; Pantůček, Roman; Perreten, Vincent (2023). Novel Antimicrobial Genetic Elements in Methicillin-Resistant Macrococcus armenti. Microbial drug resistance, 29(2), pp. 65-68. Mary Ann Liebert 10.1089/mdr.2022.0162

Gutierrez-Quintana, Rodrigo; Christen, Matthias; Faller, Kiterie M E; Guevar, Julien; Jagannathan, Vidhya; Leeb, Tosso (2023). SCN9A variant in a family of mixed breed dogs with congenital insensitivity to pain. Journal of veterinary internal medicine, 37(1), pp. 230-235. Wiley 10.1111/jvim.16610

Frei, David; Reichlin, Pascal; Seehausen, Ole; Feulner, Philine G. D. (2023). Introgression from extinct species facilitates adaptation to its vacated niche. Molecular Ecology, 32(4), pp. 841-853. Wiley-Blackwell 10.1111/mec.16791

Hilton, Stephanie; Christen, Matthias; Bilzer, Thomas; Jagannathan, Vidhya; Leeb, Tosso; Giger, Urs (2023). Dystrophin (DMD) Missense Variant in Cats with Becker-Type Muscular Dystrophy. International journal of molecular sciences, 24(4), p. 3192. MDPI 10.3390/ijms24043192

Christen, Matthias; Ludwig-Peisker, Odette; Jagannathan, Vidhya; Hetzel, Udo; Schönball, Ulrike; Leeb, Tosso (2023). STK36 splice site variant in an Australian Shepherd dog with primary ciliary dyskinesia. Animal genetics, 54(3), pp. 412-415. Wiley 10.1111/age.13306

Albert, Ervin; Sipos, Rita; Perreten, Vincent; Tóth, Ákos; Ungvári, Erika; Papp, Márton; Dán, Ádám; Biksi, Imre; Khurshid, Mohsin (2023). High Prevalence of Livestock-Associated Methicillin-Resistant Staphylococcus aureus in Hungarian Pig Farms and Genomic Evidence for the Spillover of the Pathogen to Humans. Transboundary and emerging diseases, 2023, pp. 1-13. Wiley 10.1155/2023/5540019

Dell'Apa, Diletta; Fumeo, Martina; Volta, Antonella; Bernardini, Marco; Fidanzio, Francesca; Buffagni, Valentina; Christen, Matthias; Jagannathan, Vidhya; Leeb, Tosso; Bianchi, Ezio (2023). Case report: Sacral agenesis in two boxer dogs: clinical presentation, diagnostic investigations, and outcome. Frontiers in veterinary science, 10, p. 1201484. Frontiers Media 10.3389/fvets.2023.1201484

2022

Marchionatti, Emma; Perreten, Vincent (2022). Whole-Genome Sequences of Antibiotic-Resistant Trueperella pyogenes Isolates from Surgical Site Infections in Dairy Cows in Switzerland. Microbiology resource announcements, 11(12), e0086522. American Society for Microbiology 10.1128/mra.00865-22

Jeffries, Daniel L; Mee, Jonathan A; Peichel, Catherine L (2022). Identification of a candidate sex determination gene in Culaea inconstans suggests convergent recruitment of an Amh duplicate in two lineages of stickleback. Journal of evolutionary biology, 35(12), pp. 1683-1695. Wiley 10.1111/jeb.14034

Findlay, Jacqueline; Perreten, Vincent; Poirel, Laurent; Nordmann, Patrice (2022). Molecular analysis of OXA-48-producing Escherichia coli in Switzerland from 2019 to 2020. European journal of clinical microbiology & infectious diseases, 41(11), pp. 1355-1360. Springer 10.1007/s10096-022-04493-6

Fernandez, Javier E; Seth-Smith, Helena M B; Nordmann, Patrice; Egli, Adrian; Endimiani, Andrea; Perreten, Vincent (2022). Intra- and Interspecies Spread of a Novel Conjugative Multidrug Resistance IncC Plasmid Coharboring blaOXA-181 and armA in a Cystic Fibrosis Patient. Microbiology spectrum, 10(5), e0312122. American Society for Microbiology 10.1128/spectrum.03121-22

Abitbol, Marie; Jagannathan, Vidhya; Laurent, Nelly; Noblet, Eglantine; Dutil, Guillaume F.; Troupel, Thibaut; de Dufaure de Citres, Caroline; Gache, Vincent; Blot, Stéphane; Escriou, Catherine; Leeb, Tosso (2022). A PNPLA8 frameshift variant in Australian shepherd dogs with hereditary ataxia. Animal genetics, 53(5), pp. 709-712. Wiley 10.1111/age.13245

Becker, Jens; Fernandez, Javier E; Rossano, Alexandra; Meylan, Mireille; Perreten, Vincent (2022). Clonal dissemination of MDR Pasteurella multocida ST79 in a small Swiss veal calf farm with high use of antibiotics. The journal of antimicrobial chemotherapy, 77(10), pp. 2886-2888. Oxford University Press 10.1093/jac/dkac270

Christen, Matthias; Gutierrez-Quintana, Rodrigo; Vandenberghe, Helene; Kaczmarska, Adriana; Penderis, Jacques; José-López, Roberto; Rupp, Angie; Griffiths, Ian R; Jagannathan, Vidhya; Leeb, Tosso (2022). Mitochondrial fission factor (MFF) frameshift variant in Bullmastiffs with mitochondrial fission encephalopathy. Animal genetics, 53(6), pp. 814-820. Wiley 10.1111/age.13263

Kiener, Sarah; Mauldin, Elizabeth A; Jagannathan, Vidhya; Casal, Margret L; Leeb, Tosso (2022). KRT5 missense variant in a Cardigan Welsh Corgi with epidermolysis bullosa simplex. Animal genetics, 53(6), pp. 892-896. Wiley 10.1111/age.13257

Dagilis, Andrius J; Sardell, Jason M; Josephson, Matthew P; Su, Yiheng; Kirkpatrick, Mark; Peichel, Catherine L (2022). Searching for signatures of sexually antagonistic selection on stickleback sex chromosomes. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 377(1856), p. 20210205. Royal Society of London 10.1098/rstb.2021.0205

Radulovic, Emilia; Mehinagic, Kemal; Wüthrich, Tsering; Hilty, Markus; Posthaus, Horst; Summerfield, Artur; Ruggli, Nicolas; Benarafa, Charaf (2022). The baseline immunological and hygienic status of pigs impact disease severity of African swine fever. PLoS pathogens, 18(8), e1010522. Public Library of Science 10.1371/journal.ppat.1010522

Hierweger, Melanie M.; Remy-Wohlfender, Franziska; Franzen, Jan; Koch, Michel C.; Blau, Désirée; Schoster, Angelika; Nicholson, Pamela; Gerber, Vinzenz; Gurtner, Corinne; Fouché, Nathalie; Unger, Lucia; Seuberlich, Torsten (2022). Outbreak of equine coronavirus disease in adult horses, Switzerland 2021. Transboundary and emerging diseases, 69(4), pp. 1691-1694. Wiley 10.1111/tbed.14501

Hurni, J I; Kaiser-Thom, S; Gerber, V; Keller, J E; Collaud, A; Fernandez, J; Schwendener, S; Perreten, V (2022). Prevalence and whole genome-based phylogenetic, virulence and antibiotic ­resistance characteristics of nasal ­Staphylococcus aureus in healthy Swiss horses. Schweizer Archiv für Tierheilkunde, 164(7), pp. 499-512. Gesellschaft Schweizer Tierärztinnen und Tierärzte 10.17236/sat00360

Kiener, Sarah; Chevallier, Lucie; Jagannathan, Vidhya; Briand, Amaury; Cochet-Faivre, Noëlle; Reyes-Gomez, Edouard; Leeb, Tosso (2022). A COL5A2 In-Frame Deletion in a Chihuahua with Ehlers-Danlos Syndrome. Genes, 13(5) MDPI, Molecular Diversity Preservation International 10.3390/genes13050934

Frei, David; De-Kayne, Rishi; Selz, Oliver M; Seehausen, Ole; Feulner, Philine G D (2022). Genomic variation from an extinct species is retained in the extant radiation following speciation reversal. Nature ecology & evolution, 6(4), pp. 461-468. Springer Nature 10.1038/s41559-022-01665-7

Kiener, Sarah; Apostolopoulos, Neoklis; Schissler, Jennifer; Hass, Pascal-Kolja; Leuthard, Fabienne; Jagannathan, Vidhya; Schuppisser, Carole; Soto, Sara; Welle, Monika; Mayer, Ursula; Leeb, Tosso; Fischer, Nina M; Kaessmeyer, Sabine (2022). Independent COL5A1 Variant in Cats with Ehlers-Danlos Syndrome. Genes, 13(5), p. 797. MDPI, Molecular Diversity Preservation International 10.3390/genes13050797

Kaiser-Thom, Sarah; Gerber, Vinzenz; Collaud, Alexandra; Hurni, Joel; Perreten, Vincent (2022). Prevalence and WGS-based characteristics of Staphylococcus aureus in the nasal mucosa and pastern of horses with equine pastern dermatitis. BMC veterinary research, 18(1), p. 79. BioMed Central 10.1186/s12917-021-03053-y

Kiener, Sarah; Wiener, Dominique J; Hopke, Kaitlin; Diesel, Alison B; Jagannathan, Vidhya; Mauldin, Elizabeth A; Casal, Margret L; Leeb, Tosso (2022). ABHD5 frameshift deletion in Golden Retrievers with ichthyosis. G3 Genes Genomes Genetics, 12(2) Genetics Society of America 10.1093/g3journal/jkab397

Keller, Jennifer Eleonora; Schwendener, Sybille; Neuenschwander, Jil; Overesch, Gudrun; Perreten, Vincent (2022). Prevalence and characterization of -methicillin-resistant Macrococcus spp. in food producing animals and meat in Switzerland in 2019. Schweizer Archiv für Tierheilkunde, 164(2), pp. 153-164. Gesellschaft Schweizer Tierärztinnen und Tierärzte 10.17236/sat00343

Rudd Garces, Gabriela; Christen, Matthias; Loechel, Robert; Jagannathan, Vidhya; Leeb, Tosso (2022). FYCO1 Frameshift Deletion in Wirehaired Pointing Griffon Dogs with Juvenile Cataract. Genes, 13(2), p. 334. MDPI, Molecular Diversity Preservation International 10.3390/genes13020334

Keller, Jennifer Eleonora; Schwendener, Sybille; Overesch, Gudrun; Perreten, Vincent (2022). Macrococcus armenti sp. nov., a novel bacterium isolated from the skin and nasal cavities of healthy pigs and calves. International journal of systematic and evolutionary microbiology, 72(2) Society for General Microbiology SGM 10.1099/ijsem.0.005245

Signer-Hasler, Heidi; Henkel, Jan; Bangerter, Erika; Bulut, Zafer; Drögemüller, Cord; Leeb, Tosso; Flury, Christine (2022). Runs of homozygosity in Swiss goats reveal genetic changes associated with domestication and modern selection. Genetics, selection, evolution, 54(1), p. 6. BioMed Central 10.1186/s12711-022-00695-w

Kiener, Sarah; Rostaher, Ana; Rüfenacht, Silvia; Jagannathan, Vidhya; Sundberg, John P.; Welle, Monika; Leeb, Tosso (2022). Independent DSG4 frameshift variants in cats with hair shaft dystrophy. Molecular genetics and genomics : MGG, 297(1), pp. 147-154. Springer 10.1007/s00438-021-01842-6

Retel, Cas; Kowallik, Vienna; Becks, Lutz; Feulner, Philine G. D. (2022). Strong selection and high mutation supply characterize experimental Chlorovirus evolution. Virus evolution, 8(1), pp. 1-14. Oxford University Press 10.1093/ve/veac003

Christen, Matthias; Rupp, Stefan; Van Soens, Iris; Bhatti, Sofie F. M.; Matiasek, Kaspar; von Klopmann, Thilo; Jagannathan, Vidhya; Madden, Indiana; Batcher, Kevin; Bannasch, Danika; Leeb, Tosso (2022). SLC25A12 Missense Variant in Nova Scotia Duck Tolling Retrievers Affected by Cerebellar Degeneration—Myositis Complex (CDMC). Genes, 13(7), p. 1223. MDPI, Molecular Diversity Preservation International 10.3390/genes13071223

Cvitas, Iva; Oberhaensli, Simone; Leeb, Tosso; Marti, Eliane (2022). Equine keratinocytes in the pathogenesis of insect bite hypersensitivity: Just another brick in the wall? PLoS ONE, 17(8), e0266263. Public Library of Science 10.1371/journal.pone.0266263

De-Kayne, Rishi; Selz, Oliver M; Marques, David A; Frei, David; Seehausen, Ole; Feulner, Philine G D (2022). Genomic architecture of adaptive radiation and hybridization in Alpine whitefish. Nature Communications, 13(1), p. 4479. Springer Nature 10.1038/s41467-022-32181-8

Sage, Sophie E.; Nicholson, Pamela; Peters, Laureen M.; Leeb, Tosso; Jagannathan, Vidhya; Gerber, Vinzenz (2022). Single-cell gene expression analysis of cryopreserved equine bronchoalveolar cells (In Press). Frontiers in immunology, 13 Frontiers Research Foundation 10.3389/fimmu.2022.929922

Østergård Jensen, Sarah; Christen, Matthias; Rondahl, Veronica; Holland, Christopher T.; Jagannathan, Vidhya; Leeb, Tosso; Giger, Urs (2022). EHBP1L1 Frameshift Deletion in English Springer Spaniel Dogs with Dyserythropoietic Anemia and Myopathy Syndrome (DAMS) or Neonatal Losses. Genes, 13(9), p. 1533. MDPI, Molecular Diversity Preservation International 10.3390/genes13091533

Sage, Sophie Elena; Nicholson, Pamela; Leeb, Tosso; Gerber, Vinzenz; Jagannathan, Vidhya (2022). Long-Read Transcriptome of Equine Bronchoalveolar Cells. Genes, 13(10), p. 1722. MDPI, Molecular Diversity Preservation International 10.3390/genes13101722

Christen, Matthias; Bongers, Jos; Mathis, Déborah; Jagannathan, Vidya; Quintana, Rodrigo Gutierrez; Leeb, Tosso (2022). ACADM Frameshift Variant in Cavalier King Charles Spaniels with Medium-Chain Acyl-CoA Dehydrogenase Deficiency. Genes, 13(10), p. 1847. MDPI 10.3390/genes13101847

Affolter, Verena K; Kiener, Sarah; Jagannathan, Vidhya; Nagle, Terry; Leeb, Tosso (2022). A de novo variant in the keratin 1 gene (KRT1) in a Chinese shar-pei dog with severe congenital cornification disorder and non-epidermolytic ichthyosis. PLoS ONE, 17(10), e0275367. Public Library of Science 10.1371/journal.pone.0275367

Ludwig-Peisker, Odette; Ansel, Emily; Schweizer, Daniela; Jagannathan, Vidhya; Loechel, Robert; Leeb, Tosso (2022). PCYT1A Missense Variant in Vizslas with Disproportionate Dwarfism. Genes, 13(12), p. 2354. MDPI, Molecular Diversity Preservation International 10.3390/genes13122354

2021

Christen, Matthias; Reineking, Wencke; Beineke, Andreas; Jagannathan, Vidhya; Baumgärtner, Wolfgang; Leeb, Tosso (2021). Polyadenine insertion disrupting the G6PC1 gene in German Pinschers with glycogen storage disease type Ia (GSD1A). Animal genetics, 52(6), pp. 900-902. Wiley 10.1111/age.13146

Bannasch, Danika L.; Kaelin, Christopher B; Letko, Anna; Loechel, Robert; Hug, Petra; Jagannathan, Vidhya; Henkel, Jan; Roosje, Petra; Hytönen, Marjo K; Lohi, Hannes; Arumilli, Meharji; Minor, Katie M; Mickelson, James R; Drögemüller, Cord; Barsh, Gregory S; Leeb, Tosso (2021). Dog colour patterns explained by modular promoters of ancient canid origin. Nature ecology & evolution, 5(10), pp. 1415-1423. Nature Publishing Group 10.1038/s41559-021-01524-x

Christen, Matthias; Högler, Sandra; Kleiter, Miriam; Leschnik, Michael; Weber, Corinna; Thaller, Denise; Jagannathan, Vidya; Leeb, Tosso (2021). Deletion of the SELENOP gene leads to CNS atrophy with cerebellar ataxia in dogs. PLoS genetics, 17(8), e1009716. Public Library of Science 10.1371/journal.pgen.1009716

Henkel, Jan; Dubacher, Alexandra; Bangerter, Erika; Herren, Ursula; Ammann, Philippe; Drögemüller, Cord; Flury, Christine; Leeb, Tosso (2021). Introgression of ASIP and TYRP1 Alleles Explains Coat Color Variation in Valais Goats. Journal of heredity, 112(5), pp. 452-457. Oxford University Press 10.1093/jhered/esab024

Quitt, Pia R; Brühschwein, Andreas; Matiasek, Kaspar; Wielaender, Franziska; Karkamo, Veera; Hytönen, Marjo K; Meyer-Lindenberg, Andrea; Dengler, Berett; Leeb, Tosso; Lohi, Hannes; Fischer, Andrea (2021). A hypomyelinating leukodystrophy in German Shepherd dogs. Journal of veterinary internal medicine, 35(3), pp. 1455-1465. Wiley-Blackwell 10.1111/jvim.16085

Brilhante, Michael; Gobeli Brawand, Stefanie; Endimiani, Andrea; Rohrbach, Helene; Kittl, Sonja; Willi, Barbara; Schuller, Simone; Perreten, Vincent (2021). Two high-risk clones of carbapenemase-producing Klebsiella pneumoniae that cause infections in pets and are present in the environment of a veterinary referral hospital. Journal of antimicrobial chemotherapy, 76(5), pp. 1140-1149. Oxford University Press 10.1093/jac/dkab028

Balmer, Pierre; Hariton, William V. J.; Sayar, Beyza; Jagannathan, Vidhya; Galichet, Arnaud; Leeb, Tosso; Roosje, Petra; Müller, Eliane J. (2021). SUV39H2 epigenetic silencing controls fate conversion of epidermal stem and progenitor cells. Journal of cell biology, 220(4) Rockefeller Institute Press 10.1083/jcb.201908178

Naguleswaran, Arunasalam; Alves Fernandes, Paula; Bevkal Subramanyaswamy, Shubha; Rehmann, Ruth; Nicholson, Pamela; Roditi, Isabel (2021). Draft genome of Trypanosoma b. brucei EATRO1125 (AnTaR1 serodeme) strain [Dataset]. In: EATRO1125 (AnTaR1 serodeme) pseudo chromosomes.

Naguleswaran, Arunasalam; Alves Fernandes, Paula; Bevkal Subramanyaswamy, Shubha; Rehmann, Ruth; Nicholson, Pamela; Roditi, Isabel (2021). Trypanosoma brucei EATRO1125 draft genome assembly (Contigs) [Dataset]. In: Trypanosoma brucei (EATRO1125) genome contigs.

O’Toole, Donal; Häfliger, Irene M.; Leuthard, Fabienne; Schumaker, Brant; Steadman, Lynn; Murphy, Brian; Drögemüller, Cord; Leeb, Tosso (2021). X-Linked Hypohidrotic Ectodermal Dysplasia in Crossbred Beef Cattle Due to a Large Deletion in EDA. Animals, 11(3), p. 657. MDPI 10.3390/ani11030657

Gerber, Nadja; Brunner, Magdalena A. T.; Jagannathan, Vidya; Leeb, Tosso; Gerhards, Nora M.; Welle, Monika M.; Dettwiler, Martina (2021). Transcriptional Differences between Canine Cutaneous Epitheliotropic Lymphoma and Immune-Mediated Dermatoses. Genes, 12(2) MDPI, Molecular Diversity Preservation International 10.3390/genes12020160

Fernandez, Javier Eduardo; Perreten, Vincent; Schwendener, Sybille (2021). The novel macrolide resistance genes mef(F) and msr(G) are located on a plasmid in Macrococcus canis and a transposon in Macrococcus caseolyticus. The journal of antimicrobial chemotherapy, 76(1), pp. 48-54. Oxford University Press 10.1093/jac/dkaa405

Christen, Matthias; Janzen, Nils; Fraser, Anne; Sewell, Adrian C.; Jagannathan, Vidhya; Guevar, Julien; Leeb, Tosso; Sanchez-Masian, Daniel (2021). L2HGDH Missense Variant in a Cat with L-2-Hydroxyglutaric Aciduria. Genes, 12(5), p. 682. MDPI, Molecular Diversity Preservation International 10.3390/genes12050682

Kiener, Sarah; Ribi, Camillo; Keller, Irene; Chizzolini, Carlo; Trendelenburg, Marten; Huynh-Do, Uyen; von Kempis, Johannes; Leeb, Tosso (2021). Variants Affecting the C-Terminal Tail of UNC93B1 Are Not a Common Risk Factor for Systemic Lupus Erythematosus. Genes, 12(8), p. 1268. MDPI, Molecular Diversity Preservation International 10.3390/genes12081268

Kiener, Sarah; Cikota, Robert; Welle, Monika; Jagannathan, Vidhya; Åhman, Susanne; Leeb, Tosso (2021). A Missense Variant in SLC39A4 in a Litter of Turkish Van Cats with Acrodermatitis Enteropathica. Genes, 12(9), p. 1309. MDPI, Molecular Diversity Preservation International 10.3390/genes12091309

Christen, Matthias; de le Roi, Madeleine; Jagannathan, Vidhya; Becker, Kathrin; Leeb, Tosso (2021). MYO5A Frameshift Variant in a Miniature Dachshund with Coat Color Dilution and Neurological Defects Resembling Human Griscelli Syndrome Type 1. Genes, 12(10), p. 1479. MDPI, Molecular Diversity Preservation International 10.3390/genes12101479

Christen, Matthias; Booij-Vrieling, Henriëtte; Oksa-Minalto, Jelena; de Vries, Cynthia; Kehl, Alexandra; Jagannathan, Vidhya; Leeb, Tosso (2021). MIA3 Splice Defect in Cane Corso Dogs with Dental-Skeletal-Retinal Anomaly (DSRA). Genes, 12(10), p. 1497. MDPI, Molecular Diversity Preservation International 10.3390/genes12101497

Rudd Garces, Gabriela; Turba, Maria Elena; Muracchini, Myriam; Diana, Alessia; Jagannathan, Vidhya; Gentilini, Fabio; Leeb, Tosso (2021). PRKG2 Splice Site Variant in Dogo Argentino Dogs with Disproportionate Dwarfism. Genes, 12(10), p. 1489. MDPI, Molecular Diversity Preservation International 10.3390/genes12101489

Sardell, Jason M; Josephson, Matthew P; Dalziel, Anne C; Peichel, Catherine L; Kirkpatrick, Mark (2021). Heterogeneous histories of recombination suppression on stickleback sex chromosomes. Molecular Biology and Evolution, 38(10), pp. 4403-4418. Oxford University Press 10.1093/molbev/msab179

Christen, Matthias; Indzhova, Victoria; Guo, Ling T.; Jagannathan, Vidhya; Leeb, Tosso; Shelton, G. Diane; Brocal, Josep (2021). LAMA2 Nonsense Variant in an Italian Greyhound with Congenital Muscular Dystrophy. Genes, 12(11), p. 1823. MDPI, Molecular Diversity Preservation International 10.3390/genes12111823

Rudd Garces, Gabriela; Knebel, Anna; Hülskötter, Kirsten; Jagannathan, Vidhya; Störk, Theresa; Hewicker-Trautwein, Marion; Leeb, Tosso; Volk, Holger A. (2021). LTBP3 Frameshift Variant in British Shorthair Cats with Complex Skeletal Dysplasia. Genes, 12(12), p. 1923. MDPI, Molecular Diversity Preservation International 10.3390/genes12121923

Liu, Zuyao; Roesti, Marius; Marques, David; Hiltbrunner, Melanie; Saladin, Verena; Peichel, Catherine L (2021). Chromosomal fusions facilitate adaptation to divergent environments in threespine stickleback (Submitted). Molecular Biology and Evolution Oxford University Press 10.1093/molbev/msab358

2020

De-Kayne, Rishi; Zoller, Stefan; Feulner, Philine G. D. (2020). A de novo chromosome‐level genome assembly of Coregonus sp. “Balchen” : one representative of the Swiss Alpine whitefish radiation. Molecular ecology resources, 20(4), pp. 1093-1109. Wiley 10.1111/1755-0998.13187

Brilhante, Michael; Menezes, Juliana; Belas, Adriana; Feudi, Claudia; Schwarz, Stefan; Pomba, Constança; Perreten, Vincent (2020). OXA-181-Producing Extraintestinal Pathogenic Escherichia coli Sequence Type 410 Isolated from a Dog in Portugal. Antimicrobial agents and chemotherapy, 64(4) American Society for Microbiology 10.1128/AAC.02298-19

Peichel, Catherine L.; McCann, Shaugnessy R; Ross, Joseph A; Naftaly, Alice FS; Urton, James R; Cech, Jennifer N; Grimwood, Jane; Schmutz, Jeremy; Myers, Richard M; Kingsley, David M; White, Michael A (2020). Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution. Genome biology, 21(1), p. 177. BioMed Central Ltd. 10.1186/s13059-020-02097-x

2019

Chanchaithong, Pattrarat; Perreten, Vincent; Schwendener, Sybille (2019). Macrococcus canis contains recombinogenic methicillin resistance elements and the mecB plasmid found in Staphylococcus aureus. Journal of antimicrobial chemotherapy, 74(9), pp. 2531-2536. Oxford University Press 10.1093/jac/dkz260

2018

Sardell, Jason M; Cheng, Changde; Dagilis, Andrius J; Ishikawa, Asano; Kitano, Jun; Peichel, Catherine L; Kirkpatrick, Mark (2018). Sex Differences in Recombination in Sticklebacks. G3 Genes Genomes Genetics, 8(6), pp. 1971-1983. Genetics Society of America 10.1534/g3.118.200166

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