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Bai, Xiaopeng; De Palma, Giada; Boschetti, Elisa; Nishihara, Yuichiro; Lu, Jun; Shimbori, Chiko; Costanzini, Anna; Saqib, Zarwa; Kraimi, Narjis; Sidani, Sacha; Hapfelmeier, Siegfried; Macpherson, Andrew J; Verdu, Elena F; De Giorgio, Roberto; Collins, Stephen M; Bercik, Premysl (2024). Vasoactive intestinal polypeptide plays a key role in the microbial-neuroimmune control of intestinal motility. Cellular and molecular gastroenterology and hepatology, 17(3), pp. 383-398. Elsevier 10.1016/j.jcmgh.2023.11.012
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Macpherson, Andrew J; Pachnis, Vassilis; Prinz, Marco (2023). Boundaries and integration between microbiota, the nervous system, and immunity. Immunity, 56(8), pp. 1712-1726. Elsevier 10.1016/j.immuni.2023.07.011
Grant, Erica T; Boudaud, Marie; Muller, Arnaud; Macpherson, Andrew J; Desai, Mahesh S (2023). Maternal diet and gut microbiome composition modulate early-life immune development. EMBO molecular medicine, 15(8), e17241. EMBO Press 10.15252/emmm.202217241
Cansever, Dilay; Petrova, Ekaterina; Krishnarajah, Sinduya; Mussak, Caroline; Welsh, Christina A; Mildenberger, Wiebke; Mulder, Kevin; Kreiner, Victor; Roussel, Elsa; Stifter, Sebastian A; Andreadou, Myrto; Zwicky, Pascale; Jurado, Nicole Puertas; Rehrauer, Hubert; Tan, Ge; Liu, Zhaoyuan; Blériot, Camille; Ronchi, Francesca; Macpherson, Andrew J; Ginhoux, Florent; ... (2023). Lactation-associated macrophages exist in murine mammary tissue and human milk. Nature immunology, 24(7), pp. 1098-1109. Springer Nature 10.1038/s41590-023-01530-0
Meier, Karin H U; Trouillon, Julian; Li, Hai; Lang, Melanie; Fuhrer, Tobias; Zamboni, Nicola; Sunagawa, Shinichi; Macpherson, Andrew J; Sauer, Uwe (2023). Metabolic landscape of the male mouse gut identifies different niches determined by microbial activities. Nature metabolism, 5(6), pp. 968-980. Springer Nature 10.1038/s42255-023-00802-1
Duan, Jinzhi; Matute, Juan D; Unger, Lukas W; Hanley, Thomas; Schnell, Alexandra; Lin, Xi; Krupka, Niklas; Griebel, Paul; Lambden, Conner; Sit, Brandon; Grootjans, Joep; Pyzik, Michal; Sommer, Felix; Kaiser, Sina; Falk-Paulsen, Maren; Grasberger, Helmut; Kao, John Y; Fuhrer, Tobias; Li, Hai; Paik, Donggi; ... (2023). Endoplasmic reticulum stress in the intestinal epithelium initiates purine metabolite synthesis and promotes Th17 cell differentiation in the gut. Immunity, 56(5), 1115-1131.e9. Elsevier 10.1016/j.immuni.2023.02.018
Macpherson, Andrew J; Sauer, Uwe (2023). Secrets of microbiota drug metabolism. Nature medicine, 29(3), pp. 537-538. Nature Publishing Group 10.1038/s41591-023-02227-5
Papotto, Pedro H; Yilmaz, Bahtiyar; Pimenta, Gonçalo; Mensurado, Sofia; Cunha, Carolina; Fiala, Gina J; Gomes da Costa, Daniel; Gonçalves-Sousa, Natacha; Chan, Brian H K; Blankenhaus, Birte; Domingues, Rita G; Carvalho, Tânia; Hepworth, Matthew R; Macpherson, Andrew J; Allen, Judith E; Silva-Santos, Bruno (2023). Maternal γδ T cells shape offspring pulmonary type 2 immunity in a microbiota-dependent manner. Cell reports, 42(2), p. 112074. Cell Press 10.1016/j.celrep.2023.112074
Kennedy, Katherine M; de Goffau, Marcus C; Perez-Muñoz, Maria Elisa; Arrieta, Marie-Claire; Bäckhed, Fredrik; Bork, Peer; Braun, Thorsten; Bushman, Frederic D; Dore, Joel; de Vos, Willem M; Earl, Ashlee M; Eisen, Jonathan A; Elovitz, Michal A; Ganal-Vonarburg, Stephanie C; Gänzle, Michael G; Garrett, Wendy S; Hall, Lindsay J; Hornef, Mathias W; Huttenhower, Curtis; Konnikova, Liza; ... (2023). Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature, 613(7945), pp. 639-649. Macmillan Journals Ltd. 10.1038/s41586-022-05546-8
Yilmaz, Bahtiyar; Fuhrer, Tobias; Morgenthaler, Deborah; Krupka, Niklas; Wang, Daoming; Spari, Daniel; Candinas, Daniel; Misselwitz, Benjamin; Beldi, Guido; Sauer, Uwe; Macpherson, Andrew J (2022). Plasticity of the adult human small intestinal stoma microbiota. Cell host & microbe, 30(12), 1773-1787.e6. Cell Press 10.1016/j.chom.2022.10.002
Rollenske, Tim; Macpherson, Andrew J (2022). "'ELO, world!"-Early-life origins of B cells. Immunity, 55(10), pp. 1753-1755. Elsevier 10.1016/j.immuni.2022.09.012
Hoces, Daniel; Lan, Jiayi; Sun, Wenfei; Geiser, Tobias; Stäubli, Melanie L; Cappio Barazzone, Elisa; Arnoldini, Markus; Challa, Tenagne D; Klug, Manuel; Kellenberger, Alexandra; Nowok, Sven; Faccin, Erica; Macpherson, Andrew; Stecher, Bärbel; Sunagawa, Shinichi; Zenobi, Renato; Hardt, Wolf-Dietrich; Wolfrum, Christian; Slack, Emma (2022). Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle. PLoS biology, 20(9), e3001743. Public Library of Science 10.1371/journal.pbio.3001743
Perruzza, Lisa; Strati, Francesco; Raneri, Matteo; Li, Hai; Gargari, Giorgio; Rezzonico-Jost, Tanja; Palatella, Martina; Kwee, Ivo; Morone, Diego; Seehusen, Frauke; Sonego, Paolo; Donati, Claudio; Franceschi, Pietro; Macpherson, Andrew J; Guglielmetti, Simone; Greiff, Victor; Grassi, Fabio (2022). Apyrase-mediated amplification of secretory IgA promotes intestinal homeostasis. Cell reports, 40(3), p. 111112. Cell Press 10.1016/j.celrep.2022.111112
Schmidt, Florian; Zimmermann, Jakob; Tanna, Tanmay; Farouni, Rick; Conway, Tyrrell; Macpherson, Andrew J; Platt, Randall J (2022). Noninvasive assessment of gut function using transcriptional recording sentinel cells. Science, 376(6594), eabm6038. American Association for the Advancement of Science 10.1126/science.abm6038
Sudworth, Amanda; Segers, Filip M; Yilmaz, Bahtiyar; Guslund, Naomi C; Macpherson, Andrew J; Dissen, Erik; Qiao, Shuo-Wang; Inngjerdingen, Marit (2022). Innate lymphoid cell characterization in the rat and their correlation to gut commensal microbes. European journal of immunology, 52(5), pp. 717-729. Wiley 10.1002/eji.202149639
Macpherson, Andrew J; Yilmaz, Bahtiyar (2022). Microbial drivers of DSS variability. Nature microbiology, 7(4), pp. 478-479. Springer Nature 10.1038/s41564-022-01097-w
Shmeleva, Evgeniya V; Gomez de Agüero, Mercedes; Wagner, Josef; Enright, Anton J; Macpherson, Andrew J; Ferguson, Brian J; Smith, Geoffrey L (2022). Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response. PLoS pathogens, 18(4), e1009854. Public Library of Science 10.1371/journal.ppat.1009854
Mossad, Omar; Batut, Bérénice; Yilmaz, Bahtiyar; Dokalis, Nikolaos; Mezö, Charlotte; Nent, Elisa; Nabavi, Lara Susann; Mayer, Melanie; Maron, Feres José Mocayar; Buescher, Joerg M; Gomez de Agüero, Mercedes; Szalay, Antal; Lämmermann, Tim; Macpherson, Andrew J; Ganal-Vonarburg, Stephanie C; Backofen, Rolf; Erny, Daniel; Prinz, Marco; Blank, Thomas (2022). Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine. Nature neuroscience, 25(3), pp. 295-305. Nature America 10.1038/s41593-022-01027-3
Fregolente, L.G.; Warncke, J.D.; van der Meer, J.; Schmidt, M.; Khatami, R.; Macpherson, A.J.; Yilmaz, B.; Bassetti, C.L.A. (2022). SPHYNCS: Gut microbiota composition is different in Narcolepsy type 1 and Narcolepsy Borderland. Sleep medicine, 100, S167. Elsevier 10.1016/j.sleep.2022.05.452
Zindel, Joel; Mittner, Jonas; Bayer, Julia; April-Monn, Simon L.; Kohler, Andreas; Nusse, Ysbrand; Dosch, Michel; Büchi, Isabel; Sanchez-Taltavull, Daniel; Dawson, Heather; Gomez de Agüero, Mercedes; Asahina, Kinji; Kubes, Paul; Macpherson, Andrew J.; Stroka, Deborah; Candinas, Daniel (2021). Intraperitoneal microbial contamination drives post-surgical peritoneal adhesions by mesothelial EGFR-signaling. Nature Communications, 12(1), p. 7316. Springer Nature 10.1038/s41467-021-27612-x
Sankowski, Roman; Ahmari, Jasmin; Mezö, Charlotte; Hrabě de Angelis, Anna Lena; Fuchs, Vidmante; Utermöhlen, Olaf; Buch, Thorsten; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Erny, Daniel (2021). Commensal microbiota divergently affect myeloid subsets in the mammalian central nervous system during homeostasis and disease. The EMBO journal, 40(23), e108605. EMBO Press 10.15252/embj.2021108605
Erny, Daniel; Dokalis, Nikolaos; Mezö, Charlotte; Castoldi, Angela; Mossad, Omar; Staszewski, Ori; Frosch, Maximilian; Villa, Matteo; Fuchs, Vidmante; Mayer, Arun; Neuber, Jana; Sosat, Janika; Tholen, Stefan; Schilling, Oliver; Vlachos, Andreas; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Pearce, Edward J and Prinz, Marco (2021). Microbiota-derived acetate enables the metabolic fitness of the brain innate immune system during health and disease. Cell metabolism, 33(11), 2260-2276.e7. Elsevier 10.1016/j.cmet.2021.10.010
Bravo, Francisco; Kapoglou, Ioannis; Bionda, Marion; Macpherson, Andrew J; Krupka, Niklas (2021). Progressive malnutrition despite percutaneous endoscopic gastrostomy. Frontline gastroenterology, 12(6), pp. 535-536. BMJ Publishing Group 10.1136/flgastro-2020-101413
Rollenske, Tim; Burkhalter, Sophie; Muerner, Lukas; von Gunten, Stephan; Lukasiewicz, Jolanta; Wardemann, Hedda; Macpherson, Andrew J. (2021). Parallelism of intestinal secretory IgA shapes functional microbial fitness. Nature, 598(7882), pp. 657-661. Springer Nature 10.1038/s41586-021-03973-7
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Colombo, Alessio Vittorio; Sadler, Rebecca Katie; Llovera, Gemma; Singh, Vikramjeet; Roth, Stefan; Heindl, Steffanie; Sebastian Monasor, Laura; Verhoeven, Aswin; Peters, Finn; Parhizkar, Samira; Kamp, Frits; Gomez de Aguero, Mercedes; Macpherson, Andrew; Winkler, Edith; Herms, Jochen; Benakis, Corinne; Dichgans, Martin; Steiner, Harald; Giera, Martin; Haass, Christian; ... (2021). Microbiota-derived short chain fatty acids modulate microglia and promote Aβ plaque deposition. eLife, 10 eLife Sciences Publications 10.7554/eLife.59826
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
Jackson, Matthew A; Pearson, Claire; Ilott, Nicholas E; Huus, Kelsey E; Hegazy, Ahmed N; Webber, Jonathan; Finlay, B Brett; Macpherson, Andrew J.; Powrie, Fiona; Lam, Lilian H (2021). Accurate identification and quantification of commensal microbiota bound by host immunoglobulins. Microbiome, 9(1), p. 33. BioMed Central 10.1186/s40168-020-00992-w
Genton, Laurence; Lazarevic, Vladimir; Stojanovic, Ozren; Spiljar, Martina; Djaafar, Souad; Koessler, Thibaud; Dutoit, Valérie; Gaïa, Nadia; Mareschal, Julie; Macpherson, Andrew James; Herrmann, Francois; Trajkovski, Mirko; Schrenzel, Jacques (2021). Metataxonomic and Metabolic Impact of Fecal Microbiota Transplantation From Patients With Pancreatic Cancer Into Germ-Free Mice: A Pilot Study. Frontiers in cellular and infection microbiology, 11, p. 752889. Frontiers 10.3389/fcimb.2021.752889
Katsidzira, Leolin; Mudombi, Wisdom F; Makunike-Mutasa, Rudo; Yilmaz, Bahtiyar; Blank, Annika; Rogler, Gerhard; Macpherson, Andrew; Vavricka, Stephan; Gangaidzo, Innocent; Misselwitz, Benjamin (2020). Inflammatory bowel disease in sub-Saharan Africa: a protocol of a prospective registry with a nested case-control study. BMJ open, 10(12), e039456. BMJ Publishing Group 10.1136/bmjopen-2020-039456
Bojaxhiu, Beat; Shrestha, Binaya Kumar; Luterbacher, Pascal; Eliçin, Olgun; Shelan, Mohamed; Macpherson, Andrew J. S.; Heimgartner, Benjamin; Giger, Roland; Aebersold, Daniel; Zaugg, Kathrin (2020). Unplanned hospitalizations in patients with locoregionally advanced head and neck cancer treated with (chemo)radiotherapy with and without prophylactic percutaneous endoscopic gastrostomy. Radiation oncology, 15(1), p. 281. BioMed Central 10.1186/s13014-020-01727-9
Duri, Kerina; Gumbo, Felicity Z; Munjoma, Privilege T; Chandiwana, Precious; Mhandire, Kudakwashe; Ziruma, Asaph; Macpherson, Andrew; Rusakaniko, Simbarashe; Gomo, Exnevia; Misselwitz, Benjamin; Mazengera, Lovemore Ronald (2020). The University of Zimbabwe College of Health Sciences (UZ-CHS) BIRTH COHORT study: rationale, design and methods. BMC infectious diseases, 20(1), p. 725. BioMed Central 10.1186/s12879-020-05432-6
Li, Hai; Limenitakis, Julien Periclis Jean; Greiff, Victor; Yilmaz, Bahtiyar; Schären, Olivier Pascal; Urbaniak, Camilla; Zünd, Mirjam; Lawson, Melissa; Young, Ian D.; Rupp, Sandra; Heikenwälder, Mathias; McCoy, Kathleen; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2020). Mucosal or systemic microbiota exposures shape the B cell repertoire. Nature, 584(7820), pp. 274-278. Springer Nature 10.1038/s41586-020-2564-6
Mezö, Charlotte; Dokalis, Nikolaos; Mossad, Omar; Staszewski, Ori; Neuber, Jana; Yilmaz, Bahtiyar; Schnepf, Daniel; Gomez de Agüero, Mercedes; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J.; Meyer-Luehmann, Melanie; Staeheli, Peter; Blank, Thomas; Prinz, Marco; Erny, Daniel (2020). Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer's disease. Acta neuropathologica communications, 8(1), p. 119. BioMed Central 10.1186/s40478-020-00988-5
Roder, Thomas; Wüthrich, Daniel; Bär, Cornelia; Sattari, Zahra; Ah, Ueli von; Ronchi, Francesca; Macpherson, Andrew; Ganal-Vonarburg, Stephanie C.; Bruggmann, Rémy; Vergères, Guy (2020). In Silico Comparison Shows that the Pan-Genome of a Dairy-Related Bacterial Culture Collection Covers Most Reactions Annotated to Human Microbiomes. Microorganisms, 8(7) MDPI 10.3390/microorganisms8070966
Bojaxhiu, Beat; Shrestha, Binaya Kumar; Luterbacher, Pascal; Eliçin, Olgun; Shelan, Mohamed; Macpherson, Andrew J. S.; Heimgartner, Benjamin; Giger, Roland; Aebersold, Daniel; Zaugg, Kathrin (2020). Unplanned hospitalizations in patients with locoregionally advanced head and neck cancer treated with (chemo)radiotherapy with and without prophylactic percutaneous endoscopic gastrostomy Research Square 10.21203/rs.3.rs-60161/v2
Pittet, Valérie; Michetti, Pierre; Müller, Christoph; Braegger, Christian P; von Känel, Roland; Schoepfer, Alain; Macpherson, Andrew J; Rogler, Gerhard (2019). Cohort Profile Update: The Swiss Inflammatory Bowel Disease Cohort Study (SIBDCS). International journal of epidemiology, 48(2), 385-386f. Oxford University Press 10.1093/iJe/dyy298
Mager, Lukas Franz; Kölzer, Viktor Hendrik; Stuber Roos, Regula; Thoo Sin Lang, Lester; Keller, Irene; Köck, Ivonne; Langenegger, Maya; Simillion, Cedric; Pfister, Simona P; Faderl, Martin Richard; Genitsch Gratwohl, Vera; Tcymbarevich, Irina; Juillerat, Pascal; Li, Xiaohong; Xia, Yu; Karamitopoulou, Evanthia; Lyck, Ruth; Zlobec, Inti; Hapfelmeier, Siegfried Hektor; Bruggmann, Rémy; ... (2017). The ESRP1-GPR137 axis contributes to intestinal pathogenesis. eLife, 6 eLife Sciences Publications 10.7554/eLife.28366
