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Borcard, Loïc; Gempeler, Sonja; Terrazos Miani, Miguel A.; Baumann, Christian; Grädel, Carole; Dijkman, Ronald; Suter-Riniker, Franziska; Leib, Stephen L; Bittel, Pascal; Neuenschwander, Stefan; Ramette, Alban (2021). Investigating the biological and technical origins of unknown bases in the S region of the SARS-CoV-2 Delta variant genome sequences (medRxiv). Cold Spring Harbor Laboratory 10.1101/2021.09.09.21262951
Gultom, Mitra; Laloli, Laura; Dijkman, Ronald (2020). Well-Differentiated Primary Mammalian Airway Epithelial Cell Cultures. In: Maier, Helena J.; Bickerton, Erica (eds.) Coronaviruses. Methods and Protocols. Methods in Molecular Biology: Vol. 2203 (pp. 119-134). Humana, New York, NY 10.1007/978-1-0716-0900-2_10
Lux, Janine; Sánchez García, Lucía; Chaparro Fernández, Patricia; Laloli, Laura; Licheri, Manon F.; Galley, Clement; Hermans, Peter W.M.; Croucher, Nicholas J.; Veening, Jan-Willem; Dijkman, Ronald; Straume, Daniel; Hathaway, Lucy J. (2024). AmiA and AliA peptide ligands, found in Klebsiella pneumoniae, are imported into pneumococci and alter the transcriptome. Scientific reports, 14 Springer Nature 10.1038/s41598-024-63217-2
Lux, Janine; Portmann, Hannah; Sánchez García, Lucia; Erhardt, Maria; Holivololona, Lalaina; Laloli, Laura; Licheri, Manon F; Gallay, Clement; Hoepner, Robert; Croucher, Nicholas J; Straume, Daniel; Veening, Jan-Willem; Dijkman, Ronald; Heller, Manfred; Grandgirard, Denis; Leib, Stephen L; Hathaway, Lucy J (2024). Klebsiella pneumoniae peptide hijacks a Streptococcus pneumoniae permease to subvert pneumococcal growth and colonization. Communications biology, 7(425) Springer Nature 10.1038/s42003-024-06113-9
Probst, Lukas; Laloli, Laura; Licheri, Manon Flore; Licheri, Matthias; Gultom, Mitra; Holwerda, Melle; V'kovski, Philip; Dijkman, Ronald (2023). Generation and Characterization of an Influenza D Reporter Virus. Viruses, 15(12), p. 2444. MDPI 10.3390/v15122444
Bergant, Valter; Schnepf, Daniel; de Andrade Krätzig, Niklas; Hubel, Philipp; Urban, Christian; Engleitner, Thomas; Dijkman, Ronald; Ryffel, Bernhard; Steiger, Katja; Knolle, Percy A; Kochs, Georg; Rad, Roland; Staeheli, Peter; Pichlmair, Andreas (2023). mRNA 3'UTR lengthening by alternative polyadenylation attenuates inflammatory responses and correlates with virulence of Influenza A virus. Nature communications, 14(1), p. 4906. Nature Publishing Group 10.1038/s41467-023-40469-6
Suter, Corinne; Colakovic, Minela; Bieri, Jan; Gultom, Mitra; Dijkman, Ronald; Ros, Carlos (2023). Globoside and the mucosal pH mediate parvovirus B19 entry through the epithelial barrier. PLoS pathogens, 19(5), e1011402. Public Library of Science 10.1371/journal.ppat.1011402
Kahlert, Christian R; Nigg, Susanne; Onder, Lucas; Dijkman, Ronald; Diener, Liliane; Vidal, Ana G Jop; Rodriguez, Regulo; Vernazza, Pietro; Thiel, Volker; Vidal, Jorge E; Albrich, Werner C (2023). The quorum sensing com system regulates pneumococcal colonisation and invasive disease in a pseudo-stratified airway tissue model. Microbiological research, 268, p. 127297. Elsevier 10.1016/j.micres.2022.127297
Barut, G Tuba; Halwe, Nico Joel; Taddeo, Adriano; Kelly, Jenna N; Schön, Jacob; Ebert, Nadine; Ulrich, Lorenz; Devisme, Christelle; Steiner, Silvio; Trüeb, Bettina Salome; Hoffmann, Bernd; Berenguer Veiga, Inês; Leborgne, Nathan Georges François; Aguiar Moreira, Etori; Breithaupt, Angele; Wylezich, Claudia; Höper, Dirk; Wernike, Kerstin; Godel, Aurélie; Thomann, Lisa; ... (2022). The spike gene is a major determinant for the SARS-CoV-2 Omicron-BA.1 phenotype. Nature Communications, 13(1), p. 5929. Springer Nature 10.1038/s41467-022-33632-y
Kelly, Jenna N; Laloli, Laura; V'kovski, Philip; Holwerda, Melle; Portmann, Jasmine; Thiel, Volker; Dijkman, Ronald (2022). Comprehensive single cell analysis of pandemic influenza A virus infection in the human airways uncovers cell-type specific host transcriptional signatures relevant for disease progression and pathogenesis. Frontiers in immunology, 13(978824), p. 978824. Frontiers Research Foundation 10.3389/fimmu.2022.978824
Studer, Eveline; Meylan, Mireille; Stucki, Dimitri Yves; Becker, Jens Michael; Dijkman, Ronald; Holwerda, Melle (5 September 2022). Prevalence of BRD-related viral pathogens in the upper respiratory tract of Swiss veal calves (Unpublished). In: 73rd Annual Meeting of EAAP in Porto. Porto. 05.09.2022.
Gultom, Mitra; Kratzel, Annika; Portmann, Jasmine; Stalder, Hanspeter; Chanfon Bätzner, Astrid; Gantenbein, Hans; Gurtner, Corinne; Ebert, Nadine; Gad, Hans Henrik; Hartmann, Rune; Posthaus, Horst; Zanolari, Patrik; Pfaender, Stephanie; Thiel, Volker Earl; Dijkman, Ronald (2022). Establishment of well-differentiated camelid airway cultures to study Middle East respiratory syndrome coronavirus. Scientific reports, 12(1), p. 10340. Springer Nature 10.1038/s41598-022-13777-y
Dijkman, Ronald; Verma, Abhishek Kumar; Selvaraj, Muneeswaran; Ghimire, Roshan; Gad, Hans Henrik; Hartmann, Rune; More, Sunil; Perlman, Stanley; Thiel, Volker Earl; Channappanavar, Rudragouda (2022). Effective Interferon Lambda Treatment Regimen To Control Lethal MERS-CoV Infection in Mice. Journal of virology, 96(11), e0036422. American Society for Microbiology 10.1128/jvi.00364-22
Borcard, Loïc; Gempeler, Sonja; Terrazos Miani, Miguel A; Baumann, Christian; Grädel, Carole; Dijkman, Ronald; Suter-Riniker, Franziska; Leib, Stephen L; Bittel, Pascal; Neuenschwander, Stefan; Ramette, Alban (2022). Investigating the Extent of Primer Dropout in SARS-CoV-2 Genome Sequences During the Early Circulation of Delta Variants. Frontiers in Virology, 2 Frontiers 10.3389/fviro.2022.840952
Hirzel, Cédric; Grandgirard, Denis; Surial, Bernard; Wider, Manon F.; Leppert, David; Kuhle, Jens; Walti, Laura N.; Schefold, Joerg C.; Spinetti, Thibaud; Suter-Riniker, Franziska; Dijkman, Ronald; Leib, Stephen L (2022). Neuro-axonal injury in COVID-19: the role of systemic inflammation and SARS-CoV-2 specific immune response. Therapeutic advances in neurological disorders, 15, p. 17562864221080528. Sage 10.1177/17562864221080528
Laloli, Laura; Licheri, Manon Flore; Probst, Lukas; Licheri, Matthias; Gultom, Mitra; Holwerda, Melle; V'kovski, Philip; Dijkman, Ronald (2022). Time-resolved characterization of the innate immune response in the respiratory epithelium of human, porcine, and bovine during influenza virus infection. Frontiers in immunology, 13, p. 970325. Frontiers Research Foundation 10.3389/fimmu.2022.970325
Barut, Tuba; Halwe, Nico Joel; Taddeo, Adriano; Kelly, Jenna N.; Schön, Jacob; Ebert, Nadine; Ulrich, Lorenz; Devisme, Christelle; Steiner, Silvio; Trüeb, Bettina Salome; Hoffmann, Bernd; Berenguer Veiga, Inês; Leborgne, Nathan Georges François; Aguiar Moreira, Etori; Breithaupt, Angele; Wylezich, Claudia; Höper, Dirk; Wernike, Kerstin; Godel, Aurélie; Thomann, Lisa; ... (2022). The spike gene is a major determinant for the SARS-CoV-2 Omicron-BA. 1 phenotype (bioRxiv). Cold Spring Harbor Laboratory
Kratzel, Annika; Kelly, Jenna N; V'kovski, Philip; Portmann, Jasmine; Brüggemann, Yannick; Todt, Daniel; Ebert, Nadine; Shrestha, Neeta; Plattet, Philippe; Staab-Weijnitz, Claudia A; von Brunn, Albrecht; Steinmann, Eike; Dijkman, Ronald; Zimmer, Gert; Pfaender, Stephanie; Thiel, Volker (2021). A genome-wide CRISPR screen identifies interactors of the autophagy pathway as conserved coronavirus targets. PLoS biology, 19(12), e3001490. Public Library of Science 10.1371/journal.pbio.3001490
Ulrich, Lorenz; Halwe, Nico Joel; Taddeo, Adriano; Ebert, Nadine; Schön, Jacob; Devisme, Christelle; Trüeb, Bettina Salome; Hoffmann, Bernd; Wider, Manon; Fan, Xiaoyu; Bekliz, Meriem; Essaidi-Laziosi, Manel; Schmidt, Marie Luisa; Niemeyer, Daniela; Corman, Victor Max; Kraft, Anna; Godel, Aurélie; Laloli, Laura; Kelly, Jenna N; Calderon, Brenda M; ... (2022). Enhanced fitness of SARS-CoV-2 variant of concern Alpha but not Beta. Nature, 602(7896), pp. 307-313. Springer Nature 10.1038/s41586-021-04342-0
Sendi, Parham; Baldan, Rossella; Thierstein, Marc; Widmer, Nadja; Gowland, Peter; Gahl, Brigitta; Büchi, Annina Elisabeth; Güntensperger, Dominik; Wider, Manon; Blum, Manuel Raphael; Tinguely, Caroline; Maillat, Cédric; Theel, Elitza S; Berbari, Elie; Dijkman, Ronald; Niederhauser, Christoph (2021). A multidimensional cross-sectional analysis of COVID-19 seroprevalence among a police officer cohort: The PoliCOV-19 study. Open Forum Infectious Diseases, 8(12), ofab524. Oxford University Press 10.1093/ofid/ofab524
Schroeder, Simon; Mache, Christin; Kleine-Weber, Hannah; Corman, Victor M; Muth, Doreen; Richter, Anja; Fatykhova, Diana; Memish, Ziad A; Stanifer, Megan L; Boulant, Steeve; Gultom, Mitra; Dijkman, Ronald; Eggeling, Stephan; Hocke, Andreas; Hippenstiel, Stefan; Thiel, Volker; Pöhlmann, Stefan; Wolff, Thorsten; Müller, Marcel A and Drosten, Christian (2021). Functional comparison of MERS-coronavirus lineages reveals increased replicative fitness of the recombinant lineage 5. Nature Communications, 12(1), p. 5324. Springer Nature 10.1038/s41467-021-25519-1
Gultom, Mitra; Licheri, Matthias; Laloli, Laura; Wider, Manon; Strässle, Marina; V'kovski, Philip; Steiner, Silvio; Kratzel, Annika; Tran, Thi Nhu Thao; Probst, Lukas; Stalder, Hanspeter; Portmann, Jasmine; Holwerda, Melle; Ebert, Nadine; Stokar-Regenscheit, Nadine; Gurtner, Corinne; Zanolari, Patrik; Posthaus, Horst; Schuller, Simone; Vicente-Santos, Amanda; ... (2021). Susceptibility of Well-Differentiated Airway Epithelial Cell Cultures from Domestic and Wild Animals to Severe Acute Respiratory Syndrome Coronavirus 2. Emerging infectious diseases, 27(7), pp. 1811-1820. Centers for Disease Control and Prevention 10.3201/eid2707.204660
Studer, Eveline; Schönecker, Lutz; Meylan, Mireille; Stucki, Dimitri; Dijkman, Ronald; Holwerda, Melle; Glaus, Anna; Becker, Jens (2021). Prevalence of BRD-Related Viral Pathogens in the Upper Respiratory Tract of Swiss Veal Calves. Animals, 11(7) MDPI 10.3390/ani11071940
Strässle, Marina; Laloli, Laura; Gultom, Mitra; V'kovski, Philip; Stoffel, Michael H.; Crespo Pomar, Silvia; Chanfon Bätzner, Astrid; Ebert, Nadine; Labroussaa, Fabien; Dijkman, Ronald; Jores, Joerg; Thiel, Volker (2021). Establishment of caprine airway epithelial cells grown in an air-liquid interface system to study caprine respiratory viruses and bacteria. Veterinary microbiology, 257, p. 109067. Elsevier 10.1016/j.vetmic.2021.109067
Steinlin-Schopfer, Jacqueline; Barbani, Maria Teresa; Kamgang, Richard; Zwahlen, Martina; Suter-Riniker, Franziska; Dijkman, Ronald (2021). Evaluation of the Roche antigen rapid test and a cell culture-based assay compared to rRT- PCR for the detection of SARS-CoV-2: A contribution to the discussion about SARS-CoV-2 diagnostic tests and contagiousnes. Journal of clinical virology plus, 1(1-2), p. 100020. Elsevier 10.1016/j.jcvp.2021.100020
Stevaert, Annelies; Krasniqi, Besir; Van Loy, Benjamin; Nguyen, Tien; Thomas, Joice; Vandeput, Julie; Jochmans, Dirk; Thiel, Volker; Dijkman, Ronald; Dehaen, Wim; Voet, Arnout; Naesens, Lieve (2021). Betulonic Acid Derivatives Interfering with Human Coronavirus 229E Replication via the nsp15 Endoribonuclease. Journal of medicinal chemistry, 64(9), pp. 5632-5644. American Chemical Society 10.1021/acs.jmedchem.0c02124
Holwerda, Melle; Laloli, Laura; Wider, Manon; Schönecker, Lutz; Becker, Jens; Meylan, Mireille; Dijkman, Ronald (2021). Establishment of a Reverse Genetic System from a Bovine Derived Influenza D Virus Isolate. Viruses, 13(3) MDPI 10.3390/v13030502
V'kovski, Philip; Gultom, Mitra; Kelly, Jenna N.; Steiner, Silvio; Russeil, Julie; Mangeat, Bastien; Cora, Elisa; Pezoldt, Joern; Holwerda, Melle; Kratzel, Annika; Laloli, Laura; Wider, Manon; Portmann, Jasmine; Tran, Thao; Ebert, Nadine; Stalder, Hanspeter; Hartmann, Rune; Gardeux, Vincent; Alpern, Daniel; Deplancke, Bart; ... (2021). Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium. PLoS biology, 19(3), e3001158. Public Library of Science 10.1371/journal.pbio.3001158
Zhou, Bin; Tran, Thi Nhu Thao; Hoffmann, Donata; Taddeo, Adriano; Ebert, Nadine; Labroussaa, Fabien; Pohlmann, Anne; King, Jacqueline; Steiner, Silvio; Kelly, Jenna N.; Portmann, Jasmine; Halwe, Nico Joel; Ulrich, Lorenz; Trüeb, Bettina Salome; Fan, Xiaoyu; Hoffmann, Bernd; Wang, Li; Thomann, Lisa; Lin, Xudong; Stalder, Hanspeter; ... (2021). SARS-CoV-2 spike D614G change enhances replication and transmission. Nature, 592(7852), pp. 122-127. Springer Nature 10.1038/s41586-021-03361-1
Hufsky, Franziska; Beerenwinkel, Niko; Meyer, Irmtraud M; Roux, Simon; Cook, Georgia May; Kinsella, Cormac M; Lamkiewicz, Kevin; Marquet, Mike; Nieuwenhuijse, David F; Olendraite, Ingrida; Paraskevopoulou, Sofia; Young, Francesca; Dijkman, Ronald; Ibrahim, Bashar; Kelly, Jenna; Le Mercier, Philippe; Marz, Manja; Ramette, Alban; Thiel, Volker (2020). The International Virus Bioinformatics Meeting 2020. Viruses, 12(12) MDPI 10.3390/v12121398
Holwerda, Melle; V'kovski, Philip; Wider, Manon; Thiel, Volker; Dijkman, Ronald (2020). Identification of an Antiviral Compound from the Pandemic Response Box that Efficiently Inhibits SARS-CoV-2 Infection In Vitro. Microorganisms, 8(12) MDPI 10.3390/microorganisms8121872
Pfaender, Stephanie; Mar, Katrina B; Michailidis, Eleftherios; Kratzel, Annika; Boys, Ian N; V'kovski, Philip; Fan, Wenchun; Kelly, Jenna N.; Hirt, Dagny; Ebert, Nadine; Stalder, Hanspeter; Kleine-Weber, Hannah; Hoffmann, Markus; Heinrich Hoffmann, H; Saeed, Mohsan; Dijkman, Ronald; Steinmann, Eike; Wight-Carter, Mary; McDougal, Matthew B; Hanners, Natasha W; ... (2020). LY6E impairs coronavirus fusion and confers immune control of viral disease. Nature microbiology, 5(11), pp. 1330-1339. Springer Nature 10.1038/s41564-020-0769-y
Kratzel, Annika; Todt, Daniel; V'kovski, Philip; Steiner, Silvio; Gultom, Mitra; Tran, Thi Nhu Thao; Ebert, Nadine; Holwerda, Melle; Steinmann, Jörg; Niemeyer, Daniela; Dijkman, Ronald; Kampf, Günter; Drosten, Christian; Steinmann, Eike; Thiel, Volker; Pfaender, Stephanie (2020). Inactivation of Severe Acute Respiratory Syndrome Coronavirus 2 by WHO-Recommended Hand Rub Formulations and Alcohols. Emerging infectious diseases, 26(7), pp. 1592-1595. Centers for Disease Control and Prevention 10.3201/eid2607.200915
Tran, Thi Nhu Thao; Labroussaa, Fabien; Ebert, Nadine; V'kovski, Philip; Stalder, Hanspeter; Portmann, Jasmine; Kelly, Jenna; Steiner, Silvio; Holwerda, Melle; Kratzel, Annika; Gultom, Mitra; Schmied, Kimberly; Laloli, Laura; Hüsser, Linda; Wider, Manon; Pfaender, Stephanie; Hirt, Dagny; Cippà, Valentina; Crespo-Pomar, Silvia; Schröder, Simon; ... (2020). Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform. Nature, 582(7813), pp. 561-565. Springer Nature 10.1038/s41586-020-2294-9
Eiden, Sebastian; Dijkman, Ronald; Zell, Roland; Fuchs, Jonas; Kochs, Georg (2020). Using a mouse-adapted A/HK/01/68 influenza virus to analyse the impact of NS1 evolution in codons 196 and 231 on viral replication and virulence. Journal of general virology, 101(6), pp. 587-598. Society for General Microbiology 10.1099/jgv.0.001422
Blockus, Sebastian; Sake, Svenja M; Wetzke, Martin; Grethe, Christina; Graalmann, Theresa; Pils, Marina; Le Goffic, Ronan; Galloux, Marie; Prochnow, Hans; Rox, Katharina; Hüttel, Stephan; Rupcic, Zeljka; Wiegmann, Bettina; Dijkman, Ronald; Rameix-Welti, Marie-Anne; Eléouët, Jean-François; Duprex, W Paul; Thiel, Volker; Hansen, Gesine; Brönstrup, Mark; ... (2020). Labyrinthopeptins as virolytic inhibitors of respiratory syncytial virus cell entry. Antiviral research, 177, p. 104774. Elsevier 10.1016/j.antiviral.2020.104774
Kauer, Ronja V.; Koch, Michel Christoph; Schönecker, Lutz; Becker, Jens; Holwerda, Melle; Glaus, Anna N.; Hierweger, Melanie M.; Werder, Simea; Dijkman, Ronald; Meylan, Mireille; Seuberlich, Torsten (2020). Fecal Shedding of Bovine Astrovirus CH13/NeuroS1 in Veal Calves. Journal of clinical microbiology, 58(5) American Society for Microbiology 10.1128/JCM.01964-19
