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Rösti, Marius; Roesti, Hannes; Satokangas, Ina; Boughman, Janette; Chaturvedi, Samridhi; Wolf, Jochen B W; Langerhans, R Brian (2024). Predictability, an Orrery, and a Speciation Machine: Quest for a Standard Model of Speciation. Cold Spring Harbor perspectives in biology, 16(6) Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a041456
Peñalba, Joshua V; Runemark, Anna; Meier, Joana I; Singh, Pooja; Wogan, Guinevere O U; Sánchez-Guillén, Rosa; Mallet, James; Rometsch, Sina J; Menon, Mitra; Seehausen, Ole; Kulmuni, Jonna; Pereira, Ricardo J (2024). The Role of Hybridization in Species Formation and Persistence. (In Press). Cold Spring Harbor perspectives in biology Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a041445
De-Kayne, Rishi; Schley, Rowan; Barth, Julia M I; Campillo, Luke C; Chaparro-Pedraza, Catalina; Joshi, Jahnavi; Salzburger, Walter; Van Bocxlaer, Bert; Cotoras, Darko D; Fruciano, Carmelo; Geneva, Anthony J; Gillespie, Rosemary; Heras, Joseph; Koblmüller, Stephan; Matthews, Blake; Onstein, Renske E; Seehausen, Ole; Singh, Pooja; Svensson, Erik I; Salazar-Valenzuela, David; ... (2024). Why Do Some Lineages Radiate While Others Do Not? Perspectives for Future Research on Adaptive Radiations. (In Press). Cold Spring Harbor perspectives in biology Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a041448
Peichel, Catherine L; Bolnick, Daniel I; Brännström, Åke; Dieckmann, Ulf; Safran, Rebecca J (2024). Speciation. (In Press). Cold Spring Harbor perspectives in biology Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a041735
Lyck, Ruth; Nishihara, Hideaki; Aydin, Sidar; Soldati, Sasha; Engelhardt, Britta (2023). Modeling Brain Vasculature Immune Interactions In Vitro. Cold Spring Harbor perspectives in medicine, 13(9), a041185. Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a041185
Telenti, Amalio; Hodcroft, Emma B; Robertson, David L (2022). The Evolution and Biology of SARS-CoV-2 Variants. Cold Spring Harbor perspectives in medicine, 12(5), a041390. Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a041390
Bechara, Sebastian; Kabbani, Lyna; Maurer Alcala, Xyrus; Nowacki, Mariusz (2022). Identification of novel, functional long non-coding RNAs involved in programmed, large scale genome rearrangements. RNA, 28(8), pp. 1110-1127. Cold Spring Harbor Laboratory Press 10.1261/rna.079134.122
Angata, Takashi; von Gunten, Stephan; Schnaar, Ronald L.; Varki, Ajit (2022). I-Type Lectins. In: Essentials of Glycobiology. Cold Spring Harbor Laboratory Press 10.1101/glycobiology.4e.35
Cyrta, Joanna; Rosiene, Joel; Bareja, Rohan; Kudman, Sarah; Al Zoughbi, Wael; Motanagh, Samaneh; Wilkes, David C.; Eng, Kenneth; Zhang, Tuo; Sticca, Evan; Mathew, Susan; Rubin, Mark A.; Imielinksi, Marcin; Mosquera, Juan Miguel (2022). Whole-genome characterization of myoepithelial carcinomas of the soft tissue. Cold Spring Harbor molecular case studies, 8(7) Cold Spring Harbor Laboratory Press 10.1101/mcs.a006227
Ancar, Rachel; Li, Yize; Kindler, Eveline; Cooper, Daphne A; Ransom, Monica; Thiel, Volker; Weiss, Susan R; Hesselberth, Jay R; Barton, David J (2020). Physiologic RNA targets and refined sequence specificity of coronavirus EndoU. RNA - a publication of the RNA Society, 26(12), pp. 1976-1999. Cold Spring Harbor Laboratory Press 10.1261/rna.076604.120
La Manna, Federico; Karkampouna, Sofia; Zoni, Eugenio; De Menna, Marta; Hensel, Janine; Thalmann, George; Kruithof-de Julio, Marianna (2019). Metastases in Prostate Cancer. Cold Spring Harbor perspectives in medicine, 9(3) Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a033688
Padeken, Jan; Zeller, Peter; Towbin, Benjamin; Katic, Iskra; Kalck, Veronique; Methot, Stephen P; Gasser, Susan M (2019). Synergistic lethality between BRCA1 and H3K9me2 loss reflects satellite derepression. Genes & development, 33(7-8), pp. 436-451. Cold Spring Harbor Laboratory Press 10.1101/gad.322495.118
Rubin, Mark A.; Demichelis, Francesca (2019). The Genomics of Prostate Cancer: A Historic Perspective. Cold Spring Harbor perspectives in medicine, 9(3) Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a034942
Shen, Michael M; Rubin, Mark Andrew (2019). Prostate Cancer Research at the Crossroads. Cold Spring Harbor perspectives in medicine, 9(7) Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a036277
Nicholson, Pamela; Gkratsou, Asimina; Josi, Christoph; Colombo, Martino; Mühlemann, Oliver (2018). Dissecting the functions of SMG5, SMG7 and PNRC2 in nonsense-mediated mRNA decay of human cells. RNA - a publication of the RNA Society, 24(4), pp. 557-573. Cold Spring Harbor Laboratory Press 10.1261/rna.063719.117
Macpherson, Andrew (2018). Do the Microbiota Influence Vaccines and Protective Immunity to Pathogens? Issues of Sovereignty, Federalism, and Points-Testing in the Prokaryotic and Eukaryotic Spaces of the Host-Microbial Superorganism. Cold Spring Harbor perspectives in biology, 10(2) Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a029363
Sarin, L. Peter; Kienast, Sandra D.; Leufken, Johannes; Ross, Robert L.; Dziergowska, Agnieszka; Debiec, Katarzyna; Sochacka, Elzbieta; Limbach, Patrick A.; Fufezan, Christian; Drexler, Hannes C.A.; Leidel, Sebastian Andreas (2018). Nano LC-MS using capillary columns enables accurate quantification of modified ribonucleosides at low femtomol levels. RNA - a publication of the RNA Society, 24(10), pp. 1403-1417. Cold Spring Harbor Laboratory Press 10.1261/rna.065482.117
La Manna, Federico; Karkampouna, Sofia; Zoni, Eugenio; De Menna, Marta; Hensel, Janine; Thalmann, George; Kruithof-de Julio, Marianna (2018). Erratum: Metastases in Prostate Cancer. Cold Spring Harbor perspectives in medicine, 8(7) Cold Spring Harbor Laboratory Press 10.1101/cshperspect.a035568
Colombo, Martino; Karousis, Evangelos D.; Bourquin, Joëll; Bruggmann, Rémy; Mühlemann, Oliver (2017). Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways. RNA - a publication of the RNA Society, 23(2), pp. 189-201. Cold Spring Harbor Laboratory Press 10.1261/rna.059055.116
Wilkes, David C; Sailer, Verena; Xue, Hui; Cheng, Hongwei; Collins, Colin C; Gleave, Martin; Wang, Yuzhuo; Demichelis, Francesca; Beltran, Himisha; Rubin, Mark Andrew; Rickman, David S (2017). A germline FANCA alteration that is associated with increased sensitivity to DNA damaging agents. Cold Spring Harbor molecular case studies, 3(5) Cold Spring Harbor Laboratory Press 10.1101/mcs.a001487
Mas-Ponte, David; Carlevaro Fita, Joana; Palumbo, Emilio; Hermoso Pulido, Toni; Guigo, Roderic; Johnson, Rory (2017). LncATLAS database for subcellular localization of long noncoding RNAs. RNA - a publication of the RNA Society, 23(7), pp. 1080-1087. Cold Spring Harbor Laboratory Press 10.1261/rna.060814.117
Tuzlak, Selma; Kaufmann, Thomas; Villunger, Andreas (2016). Interrogating the relevance of mitochondrial apoptosis for vertebrate development and postnatal tissue homeostasis. Genes & development, 30(19), pp. 2133-2151. Cold Spring Harbor Laboratory Press 10.1101/gad.289298.116
Carlevaro Fita, Joana; Rahim, Anisa; Guigó, Roderic; Vardy, Leah A; Johnson, Rory Baldwin (2016). Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells. RNA - a publication of the RNA Society, 22(6), pp. 867-882. Cold Spring Harbor Laboratory Press 10.1261/rna.053561.115
Sharma, Rahul; Jost, Daniel; Kind, Jop; Gómez-Saldivar, Georgina; van Steensel, Bas; Askjaer, Peter; Vaillant, Cédric; Meister, Pierre (2014). Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans. Genes & development, 28(23), pp. 2591-2596. Cold Spring Harbor Laboratory Press 10.1101/gad.248864.114
Metze, Stefanie; Herzog, Veronika A.; Ruepp, Marc-David; Mühlemann, Oliver (2013). Comparison of EJC-enhanced and EJC-independent NMD in human cells reveals two partially redundant degradation pathways. RNA - a publication of the RNA Society, 19(10), pp. 1432-1448. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.038893.113
Ruepp, Marc-David; Schümperli, Daniel; Barabino, Silvia M.L. (2011). mRNA 3' end processing and more - multiple functions of mammalian cleavage factor I-68. RNA - a publication of the RNA Society, 2(1), pp. 79-91. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1002/wrna.35
Yepiskoposyan, Hasmik; Aeschimann, Florian; Nilsson, Daniel; Okoniewski, Michal; Mühlemann, Oliver (2011). Autoregulation of the nonsense-mediated mRNA decay pathway in human cells. RNA - a publication of the RNA Society, 17(12), pp. 2108-2118. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.030247.111
de Turris, Valeria; Nicholson, Pamela; Zamudio Orozco, Rodolfo; Singer, Robert H.; Mühlemann, Oliver (2011). Cotranscriptional effect of a premature termination codon revealed by live-cell imaging. RNA - a publication of the RNA Society, 17(12), pp. 2094-2107. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.02918111
Yoshida, Saiko; Mandel, Therese; Kuhlemeier, Cris (2011). Stem cell activation by light guides plant organogenesis. Genes & development, 25(13), pp. 1439-1450. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press 10.1101/gad.631211
Barta, Andrea; Schümperli, Daniel (2010). Editorial on Alternative Splicing and Disease. RNA - a publication of the RNA Society, 7(4), pp. 388-389. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.4161/rna.7.4.12818
Meister, Peter; Towbin, Benjamin D.; Pike, Brietta L; Ponti, Aaron; Gasser, Susan M (2010). The spatial dynamics of tissue-specific promoters during C. elegans development. Genes & development, 24(8), pp. 766-782. Cold Spring Harbor Laboratory Press 10.1101/gad.559610
Bayer, Emmanuelle; Smith, Richard Simon; Mandel, Therese; Nakayama, Naomi; Sauer, Michael; Prusinkiewicz, Przemyslaw; Kuhlemeier, Cris (2009). Integration of transport-based models for phyllotaxis and midvein formation. Genes & development, 23(3), pp. 373-384. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press 10.1101/gad.497009
Stalder, Lukas; Mühlemann, Oliver (2009). Processing bodies are not required for mammalian nonsense-mediated mRNA decay. RNA - a publication of the RNA Society, 15(7), pp. 1265-1273. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.1672509
Eberle, Andrea; Herrmann, Kai; Jäck, Hans-Martin; Mühlemann, Oliver (2009). Equal transcription rates of productively and nonproductively rearranged immunoglobulin mu heavy chain alleles in a pro-B cell line. RNA - a publication of the RNA Society, 15(6), pp. 1021-1028. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.1516409
Bainbridge, Kathrine; Guyomarc'h, Soazig; Bayer, Emmanuelle; Swarup, Ranjan; Bennett, Malcolm; Mandel, Therese; Kuhlemeier, Cris (2008). Auxin influx carriers stabilize phyllotactic patterning. Genes & development, 22(6), pp. 810-823. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press 10.1101/gad.462608
Mäkinen, Taija; Adams, Ralf H; Bailey, John; Lu, Qiang; Ziemiecki, Andrew; Alitalo, Kari; Klein, Rüdiger; Wilkinson, George A (2005). PDZ interaction site in ephrinB2 is required for the remodeling of lymphatic vasculature. Genes & development, 19(3), pp. 397-410. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press 10.1101/gad.330105
Gorgoni, Barbara; Andrews, Stuart; Schaller, André; Schümperli, Daniel; Gray, Nicola K; Müller, Berndt (2005). The stem-loop binding protein stimulates histone translation at an early step in the initiation pathway. RNA - a publication of the RNA Society, 11(7), pp. 1030-1042. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.7281305
Takeda, Shin; Tadele, Zerihun; Hofmann, Ingo; Probst, Aline V.; Angelis, Karel J.; Kaya, Hidetaka; Araki, Takashi; Mengiste, Tesfaye; Scheid, Ortrun Mittelsten; Shibahara, Kei-ichi; Scheel, Dierk; Paszkowski, Jerzy (2004). BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis. Genes & development, 18(7), pp. 782-793. Cold Spring Harbor Laboratory Press 10.1101/gad.295404
Azzouz, Teldja N; Schümperli, Daniel (2003). Evolutionary conservation of the U7 small nuclear ribonucleoprotein in Drosophila melanogaster. RNA - a publication of the RNA Society, 9(12), pp. 1532-1541. Cold Spring Harbor Laboratory Press 10.1261/rna.5143303
Pillai, Ramesh S; Grimmler, Matthias; Meister, Gunter; Will, Cindy L; Lührmann, Reinhard; Fischer, Utz; Schümperli, Daniel (2003). Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing. Genes & development, 17(18), pp. 2321-2333. Cold Spring Harbor Laboratory Press 10.1101/gad.274403
Stuurman, Joroen; Jäggi, Fabienne; Kuhlemeier, Cris (2002). Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes & development, 16(17), pp. 2213-2218. Cold Spring Harbor Laboratory Press 10.1101/gad.230702
Zanier, Katia; Luyten, Ingrid; Crombie, Catriona; Muller, Berndt; Schümperli, Daniel; Linge, Jens P; Nilges, Michael; Sattler, Michael (2002). Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression. RNA - a publication of the RNA Society, 8(1), pp. 29-46. Cold Spring Harbor Laboratory Press
Ellis, Tammy; Gambardella, Laure; Horcher, Markus; Tschanz, Stefan A.; Capol, Janine; Bertram, Paula; Jochum, Wolfram; Barrandon, Yann; Busslinger, Meinrad (2001). The transcriptional repressor CDP (Cutl1) is essential for epithelial cell differentiation of the lung and the hair follicle. Genes & development, 15(17), pp. 2307-2319. Cold Spring Harbor Laboratory Press 10.1101/gad.200101
Michel, F; Schümperli, Daniel; Müller, B (2000). Specificities of Caenorhabditis elegans and human hairpin binding proteins for the first nucleotide in the histone mRNA hairpin loop. RNA - a publication of the RNA Society, 6(11), pp. 1539-1550. Cold Spring Harbor Laboratory Press
Adams, RH; Wilkinson, GA; Weiss, C; Diella, F; Gale, NW; Deutsch, U; Risau, W; Klein, R (1999). Roles of ephrinB ligands and EphB receptors in cardiovascular development: demarcation of arterial/venous domains, vascular morphogenesis, and sprouting angiogenesis. Genes & development, 13(3), pp. 295-306. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press 10.1101/gad.13.3.295
Sierakowska, H; Sambade, M J; Schümperli, Daniel; Kole, R (1999). Sensitivity of splice sites to antisense oligonucleotides in vivo. RNA - a publication of the RNA Society, 5(3), pp. 369-377. Cold Spring Harbor Laboratory Press
Walther, T N; Wittop Koning, T H; Schümperli, Daniel; Müller, B (1998). A 5'-3' exonuclease activity involved in forming the 3' products of histone pre-mRNA processing in vitro. RNA - a publication of the RNA Society, 4(9), pp. 1034-1046. Cold Spring Harbor Laboratory Press
Furger, A; Schaller, A; Schümperli, Daniel (1998). Functional importance of conserved nucleotides at the histone RNA 3' processing site. RNA - a publication of the RNA Society, 4(3), pp. 246-256. Cold Spring Harbor Laboratory Press
