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Burz, Sebastian Dan; Causevic, Senka; Dal Co, Alma; Dmitrijeva, Marija; Engel, Philipp; Garrido-Sanz, Daniel; Greub, Gilbert; Hapfelmeier, Siegfried; Hardt, Wolf-Dietrich; Hatzimanikatis, Vassily; Heiman, Clara Margot; Herzog, Mathias Klaus-Maria; Hockenberry, Alyson; Keel, Christoph; Keppler, Andreas; Lee, Soon-Jae; Luneau, Julien; Malfertheiner, Lukas; Mitri, Sara; Ngyuen, Bidong; ... (2023). From microbiome composition to functional engineering, one step at a time. Microbiology and molecular biology reviews, 87(4), e0006323. American Society for Microbiology 10.1128/mmbr.00063-23
Gurtner, Alessandra; Borrelli, Costanza; Gonzalez-Perez, Ignacio; Bach, Karsten; Acar, Ilhan E; Núñez, Nicolás G; Crepaz, Daniel; Handler, Kristina; Vu, Vivian P; Lafzi, Atefeh; Stirm, Kristin; Raju, Deeksha; Gschwend, Julia; Basler, Konrad; Schneider, Christoph; Slack, Emma; Valenta, Tomas; Becher, Burkhard; Krebs, Philippe; Moor, Andreas E; ... (2023). Active eosinophils regulate host defense and immune responses in colitis. Nature, 615(7950), pp. 151-157. Macmillan Journals Ltd. 10.1038/s41586-022-05628-7
Hoces, Daniel; Lan, Jiayi; Sun, Wenfei; Geiser, Tobias; Stäubli, Melanie L; Cappio Barazzone, Elisa; Arnoldini, Markus; Challa, Tenagne D; Klug, Manuel; Kellenberger, Alexandra; Nowok, Sven; Faccin, Erica; Macpherson, Andrew; Stecher, Bärbel; Sunagawa, Shinichi; Zenobi, Renato; Hardt, Wolf-Dietrich; Wolfrum, Christian; Slack, Emma (2022). Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle. PLoS biology, 20(9), e3001743. Public Library of Science 10.1371/journal.pbio.3001743
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
Pfister, Simona P.; Schären, Olivier P.; Beldi, Luca; Printz, Andrea; D. Notter, Matheus; Mukherjee, Mohana; Li, Hai; Limenitakis, Julien P.; Werren, Joel P.; Tandon, Disha; Cuenca, Miguelangel; Hagemann, Stefanie; Uster, Stephanie S.; Terrazos, Miguel A.; Gomez de Agüero, Mercedes; Schürch, Christian M.; M. Coelho, Fernanda; Curtiss, Roy; Slack, Emma; Balmer, Maria L; ... (2021). Author Correction: Uncoupling of invasive bacterial mucosal immunogenicity from pathogenicity. Nature Communications, 12(1), p. 798. Springer Nature 10.1038/s41467-021-21096-5
Pfister, Simona; Schären, Olivier P.; Beldi, Luca; Printz, Andrea; Notter, Matheus D.; Mukherjee, Mohana; Li, Hai; Limenitakis, Julien P.; Werren, Joel P.; Tandon, Disha; Cuenca Vera, Miguelangel; Hagemann, Stefanie Claudia; Uster, Stephanie S.; Terrazos, Miguel A.; Gomez de Agüero, Mercedes; Schürch, Christian M.; Matos Coelho, Fernanda; Curtiss, Roy; Slack, Emma; Balmer, Maria L.; ... (2020). Uncoupling of invasive bacterial mucosal immunogenicity from pathogenicity. Nature Communications, 11(1), p. 1978. Springer Nature 10.1038/s41467-020-15891-9
Wotzka, Sandra Y; Kreuzer, Markus; Maier, Lisa; Arnoldini, Markus; Nguyen, Bidong D; Brachmann, Alexander O; Berthold, Dorothée L; Zünd, Mirjam; Hausmann, Annika; Bakkeren, Erik; Hoces, Daniel; Gül, Ersin; Beutler, Markus; Dolowschiak, Tamas; Zimmermann, Michael; Fuhrer, Tobias; Moor, Kathrin; Sauer, Uwe; Typas, Athanasios; Piel, Jörn; ... (2019). Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice. Nature microbiology, 4(12), pp. 2164-2174. Springer Nature 10.1038/s41564-019-0568-5
Moor, Kathrin; Fadlallah, Jehane; Toska, Albulena; Sterlin, Delphine; Balmer, Maria Luisa; Macpherson, Andrew; Gorochov, Guy; Larsen, Martin; Slack, Emma (2016). Analysis of bacterial-surface-specific antibodies in body fluids using bacterial flow cytometry. Nature protocols, 11(8), pp. 1531-1553. Nature Publishing Group 10.1038/nprot.2016.091
Balmer, Maria Luisa; Ma, Eric H; Bantug, Glenn R; Grählert, Jasmin; Pfister, Simona; Glatter, Timo; Jauch, Annaïse; Dimeloe, Sarah; Slack, Emma; Dehio, Philippe; Krzyzaniak, Magdalena A; King, Carolyn G; Burgener, Anne-Valérie; Fischer, Marco; Develioglu, Leyla; Belle, Réka; Recher, Mike; Bonilla, Weldy V; Macpherson, Andrew; Hapfelmeier, Siegfried Hektor; ... (2016). Memory CD8(+) T Cells Require Increased Concentrations of Acetate Induced by Stress for Optimal Function. Immunity, 44(6), pp. 1312-1324. Cell Press 10.1016/j.immuni.2016.03.016
Moor, Kathrin; Wotzka, Sandra Y; Toska, Albulena; Diard, Médéric; Hapfelmeier, Siegfried Hektor; Slack, Emma (2016). Peracetic Acid Treatment Generates Potent Inactivated Oral Vaccines from a Broad Range of Culturable Bacterial Species. Frontiers in immunology, 7(34), p. 34. Frontiers Research Foundation 10.3389/fimmu.2016.00034
Proietti, Michele; Cornacchione, Vanessa; Rezzonico Jost, Tanja; Romagnani, Andrea; Faliti, Caterina Elisa; Perruzza, Lisa; Rigoni, Rosita; Radaelli, Enrico; Caprioli, Flavio; Preziuso, Silvia; Brannetti, Barbara; Thelen, Marcus; McCoy, Kathleen; Slack, Emma; Traggiai, Elisabetta; Grassi, Fabio (2014). ATP-gated ionotropic P2X7 receptor controls follicular T helper cell numbers in Peyer's patches to promote host-microbiota mutualism. Immunity, 41(5), pp. 789-801. Cell Press 10.1016/j.immuni.2014.10.010
Balmer, Maria L; Schürch, Christian; Saito, Yasuyuki; Geuking, Markus; Li, Hai; Cuenca, Miguelangel; Kovtonyuk, Larisa V; McCoy, Kathleen; Hapfelmeier, Siegfried; Ochsenbein, Adrian; Manz, Markus G; Slack, Emma; Macpherson, Andrew (2014). Microbiota-derived compounds drive steady-state granulopoiesis via MyD88/TICAM signaling. Journal of immunology, 193(10), pp. 5273-5283. American Association of Immunologists 10.4049/jimmunol.1400762
Slack, Emma; Balmer, Maria Luisa; Macpherson, Andrew (2014). B cells as a critical node in the microbiota-host immune system network. Immunological reviews, 260(1), pp. 50-66. Wiley-Blackwell 10.1111/imr.12179
Balmer, Maria Luisa; Slack, Emma; De Gottardi, Andrea; Lawson, Melissa; Hapfelmeier, Siegfried Hektor; Miele, Luca; Grieco, Antonio; Van Vlierberghe, Hans; Fahrner, René; Patuto, Nicola; Bernsmeier, Christine; Ronchi, Francesca; Wyss, Madeleine; Keogh-Stroka, Deborah M.; Dickgreber, Nina; Heim, Markus H; McCoy, Kathy D; Macpherson, Andrew (2014). The liver may act as a firewall mediating mutualism between the host and its gut commensal microbiota. Science translational medicine, 6(237), 237ra66. American Association for the Advancement of Science 10.1126/scitranslmed.3008618
Balmer, Maria L.; Trueb, Beat; Zhuang, Lei; Slack, Emma; Beltraminelli, Helmut; Villiger, Peter Matthias (2013). Splicing defect of CD33 and inflammatory syndrome associated with occult bacterial infection. Journal of allergy and clinical immunology, 132(2), 490-493.e2. Mosby 10.1016/j.jaci.2013.03.027
Erdoes, Gabor; Balmer, Maria L; Slack, Emma; Kocsis, Istvan; Lehmann, Lutz E; Eberle, Balthasar; Stüber, Frank; Book, Malte (2013). CD62L (L-Selectin) Shedding for Assessment of Perioperative Immune Sensitivity in Patients Undergoing Cardiac Surgery with Cardiopulmonary Bypass. PLoS ONE, 8(1), e53045. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0053045
Graubardt, Nadine; Fahrner, René; Trochsler, Markus; Keogh, Adrian; Breu, Karin; Furer, Cynthia; Keogh-Stroka, Deborah M.; Robson, Simon C.; Slack, Emma; Candinas, Daniel; Beldi, Guido (2013). Promotion of liver regeneration by natural killer cells in a murine model is dependent on extracellular adenosine triphosphate phosphohydrolysis. Hepatology, 57(5), pp. 1969-1979. Wiley Interscience 10.1002/hep.26008
Seleznik, Gitta M; Reding, Theresia; Romrig, Franziska; Saito, Yasuyuki; Mildner, Alexander; Segerer, Stephan; Sun, Li-Kang; Regenass, Stephan; Lech, Maciej; Anders, Hans-Joachim; McHugh, Donal; Kumagi, Teru; Hiasa, Yoichi; Lackner, Carolin; Haybaeck, Johannes; Angst, Eliane; Perren, Aurel; Balmer, Maria Luisa; Slack, Emma; MacPherson, Andrew; ... (2012). Lymphotoxin β receptor signaling promotes development of autoimmune pancreatitis. Gastroenterology, 143(5), pp. 1361-74. Philadelphia, Pa.: Elsevier 10.1053/j.gastro.2012.07.112
Slack, Emma; Balmer, Maria Luisa; Fritz, Jörg H; Hapfelmeier, Siegfried (2012). Functional flexibility of intestinal IgA - broadening the fine line. Frontiers in immunology, 3, p. 100. Lausanne: Frontiers Research Foundation 10.3389/fimmu.2012.00100
Macpherson, Andrew J; Geuking, Markus B; Slack, Emma; Hapfelmeier, Siegfried; McCoy, Kathy D (2012). The habitat, double life, citizenship, and forgetfulness of IgA. Immunological reviews, 245(1), pp. 132-146. Oxford: Wiley-Blackwell 10.1111/j.1600-065X.2011.01072.x
Geuking, Markus B; Cahenzli, Julia; Lawson, Melissa A E; Ng, Derek C K; Slack, Emma; Hapfelmeier, Siegfried; McCoy, Kathy D; Macpherson, Andrew J (2011). Intestinal bacterial colonization induces mutualistic regulatory T cell responses. Immunity, 34(5), pp. 794-806. Cambridge, Mass.: Cell Press 10.1016/j.immuni.2011.03.021
Haas, Anna; Zimmermann, Kathrin; Graw, Frederik; Slack, Emma; Rusert, Peter; Ledergerber, Bruno; Bossart, Walter; Weber, Rainer; Thurnheer, Maria C; Battegay, Manuel; Hirschel, Bernard; Vernazza, Pietro; Patuto, Nicola; Macpherson, Andrew J; Günthard, Huldrych F; Oxenius, Annette; Swiss HIV Cohort Study, (2011). Systemic antibody responses to gut commensal bacteria during chronic HIV-1 infection. Gut, 60(11), pp. 1506-19. London: BMJ Publishing Group 10.1136/gut.2010.224774
Hapfelmeier, Siegfried; Lawson, Melissa A E; Slack, Emma; Kirundi, Jorum K; Stoel, Maaike; Heikenwalder, Mathias; Cahenzli, Julia; Velykoredko, Yuliya; Balmer, Maria L; Endt, Kathrin; Geuking, Markus B; Curtiss, Roy; McCoy, Kathy D; Macpherson, Andrew J (2010). Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science, 328(5986), pp. 1705-1709. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1188454
Slack, Emma; Hapfelmeier, Siegfried; Stecher, Bärbel; Velykoredko, Yuliya; Stoel, Maaike; Lawson, Melissa A E; Geuking, Markus B; Beutler, Bruce; Tedder, Thomas F; Hardt, Wolf-Dietrich; Bercik, Premysl; Verdu, Elena F; McCoy, Kathy D; Macpherson, Andrew J (2009). Innate and adaptive immunity cooperate flexibly to maintain host-microbiota mutualism. Science, 325(5940), pp. 617-620. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1172747
Macpherson, Andrew J; Slack, Emma; Geuking, Markus B; McCoy, Kathy D (2009). The mucosal firewalls against commensal intestinal microbes. Seminars in immunopathology, 31(2), pp. 145-9. Berlin: Springer-Verlag 10.1007/s00281-009-0174-3
Natividad, Jane M; Huang, Xianxi; Slack, Emma; Jury, Jennifer; Sanz, Yolanda; David, Chella; Denou, Emmanuel; Yang, Pinchang; Murray, Joseph; McCoy, Kathy D; Verdú, Elena F (2009). Host responses to intestinal microbial antigens in gluten-sensitive mice. PLoS ONE, 4(7), e6472. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0006472
Juillerat, Pascal; Peter, M; Macpherson, James; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (February 2015). Measurement of functional blocade of TNF-alpha by anti-TNF agents is a stronger predictor than trough levels and anti-drug antibodies: 2-year prospective clinical data (Unpublished). In: European Crohn’s and colitis organization congress (ECCO). Barcelona. Februar 2015.
Juillerat, Pascal; Andrew, Peter; Macpherson, James; Slack, Emma; Seibold, Frank Werner; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (2015). Measurement of functional blocade of TNF-alpha by anti-TNF agents is a stronger predictor than trough levels and anti-drug antibodies: 2-year prospective clinical data. Gastroenterology, 148(4), pp. 850-1. Elsevier
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (May 2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Gastroenterology, 146(5), p. 239. Elsevier
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, J; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (February 2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives (DOP060). Journal of Crohn's & Colitis, 8(Suppl1), pp. 43-44. Elsevier 10.1016/S1873-9946(14)60085-4
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, F.; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives. United european gastroenterology journal, 2(1suppl), A45-A46. Sage
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Swiss medical weekly, 144(Suppl206), 3S-3S. EMH Schweizerischer Ärzteverlag
