Whole Genome and Plasmid Sequencing for MDR Enterobacteriaceae Simultaneously Isolated from Multiple Human and Non-Human Settings: Deciphering Impact, Risks, and Dynamics for Resistance Transmission and Spread

Id1124
Grant Value350000
Commencement Date / Completion Date1 March 2018 - 28 February 2021
Funders [4] Swiss National Science Foundation
Publications Luzzaro, Francesco; Clément, Mathieu; Principe, Luigi; Viaggi, Valentina; Bernasconi, Odette J; Endimiani, Andrea (2019). Characterization of the first ESBL-producing Shigella sonnei Clinical Isolate in Italy. Journal of global antimicrobial resistance, 17, pp. 58-59. Elsevier 10.1016/j.jgar.2019.03.004
Endimiani, Andrea (15 March 2019). Carbapenem-resistant Enterobacteriaceae in the community (Unpublished). In: 7° Congresso AMIT Internazionale. Argomenti di Malattie Infettive e Tropicali. Milan. 14-15.03.2019.
Büdel, Thomas; Kuenzli, Esther; Clément, Mathieu; Bernasconi, Odette Joëlle; Fehr, Jan; Mohammed, Ali Haji; Hassan, Nadir Khatib; Zinsstag, Jakob; Hatz, Christoph; Endimiani, Andrea (14 April 2019). High prevalence of gut colonization with extended-spectrum cephalosporin- and colistin-resistant Enterobacteriaceae in healthy people in Zanzibar, Tanzania (Unpublished). In: 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam. 13-16 April, 2019.
Endimiani, Andrea (2019). Carbapenemase-producing Enterobacteriaceae in humans (Unpublished). In: One Health meets Whole genome sequencing. Lucerne. 21.05.2019.
Endimiani, Andrea (2019). Extended-Spectrum Cephalosporin- and Colistin-Resistant E. coli in Tanzania: High Prevalence of Gut Colonization in Healthy People and Chicken Meat Contamination (Unpublished). In: Microbe. San Francisco, USA. 19-24 June, 2019.
Clément, Mathieu; Keller, Peter Michael; Bernasconi, Odette Joëlle; Stirnimann, Guido; Frey, Pascal M.; Bloemberg, Guido V.; Sendi, Parham; Endimiani, Andrea (2019). First Clinical Case of In Vivo Acquisition of DHA-1 plasmid-mediated AmpC in a Salmonella enterica subsp. enterica Isolate. Antimicrobial agents and chemotherapy, 63(10) American Society for Microbiology 10.1128/AAC.00992-19
Büdel, Thomas; Kuenzli, Esther; Clément, Mathieu; Bernasconi, Odette J.; Fehr, Jan; Mohammed, Ali Haji; Hassan, Nadir Khatib; Zinsstag, Jakob; Hatz, Christoph; Endimiani, Andrea (2019). Polyclonal gut colonization with extended-spectrum cephalosporin- and/or colistin-resistant Enterobacteriaceae: a normal status for hotel employees on the island of Zanzibar, Tanzania. The journal of antimicrobial chemotherapy, 74(10), pp. 2880-2890. Oxford University Press 10.1093/jac/dkz296
Egli, Adrian; Koch, Daniel; Danuser, Jürg; Hendriksen, Rene S; Driesen, Susanne; Schmid, Diana Coman; Neher, Richard; Mäusezahl, Mirjam; Seth-Smith, Helena Mb; Bloemberg, Guido; Tschudin-Sutter, Sarah; Endimiani, Andrea; Perreten, Vincent; Greub, Gilbert; Schrenzel, Jacques; Stephan, Roger (2019). Symposium report: One Health meets sequencing. Microbes and infection, 22(1), pp. 1-7. Elsevier Masson SAS 10.1016/j.micinf.2019.07.004
Kuenzli, Esther; Büdel, Thomas; Bernasconi, Odette J.; Schlagenhauf, Patricia; Florek, Peter; Gültekin, Nejla; Hatz, Christoph; Endimiani, Andrea (2019). Intestinal Colonization with Multidrug-Resistant Enterobacteriaceae: Screening of Swiss Military Deployed to Kosovo. Journal of global antimicrobial resistance, 19, pp. 93-95. Elsevier 10.1016/j.jgar.2019.08.027
Endimiani, Andrea (22 November 2019). MDROs: molecular diagnostic tools (Unpublished). In: Symposium Antibiotic Resistance StAR. Bern. 22.11.2019.
Endimiani, Andrea; Brilhante, Michael; Bernasconi, Odette J.; Perreten, Vincent; Schmidt, Janne S; Dazio, Valentina; Nigg, Aurélien; Gobeli Brawand, Stefanie; Kuster, Stefan P; Schuller, Simone; Willi, Barbara (2020). Employees of Swiss veterinary clinics colonized with epidemic clones of carbapenemase-producing Escherichia coli. Journal of antimicrobial chemotherapy, 75(3), pp. 766-768. Oxford University Press 10.1093/jac/dkz470
Endimiani, Andrea; Bernasconi, Odette Joëlle; Büdel, Thomas; Campos-Madueno, Edgar I.; Kuenzli, Esther; Hatz, Christoph; Carattoli, Alessandra (2020). Whole-genome characterization of a Shewanella algae strain co-harboring blaCTX-M-15 and armA genes on a novel IncC plasmid. Antimicrobial agents and chemotherapy, 64(5) American Society for Microbiology 10.1128/AAC.00267-20
Büdel, Thomas; Kuenzli, Esther; Campos-Madueno, Edgar I; Mohammed, Ali Haji; Hassan, Nadir Khatib; Zinsstag, Jakob; Hatz, Christoph; Endimiani, Andrea (2020). On the island of Zanzibar people in the community are frequently colonized with the same MDR Enterobacterales found in poultry and retailed chicken meat. The journal of antimicrobial chemotherapy, 75(9), pp. 2432-2441. Oxford University Press 10.1093/jac/dkaa198
Bernasconi, Odette J.; Campos-Madueno, Edgar I.; Donà, Valentina; Perreten, Vincent; Carattoli, Alessandra; Endimiani, Andrea (2020). Investigating the Use of Bacteriophages as New Decolonization Strategy for Intestinal Carriage of CTX-M-15-producing ST131 Escherichia coli: An In Vitro Continuous Culture System Model. Journal of global antimicrobial resistance, 22, pp. 664-671. Elsevier 10.1016/j.jgar.2020.05.018
Schmidt, Janne S.; Kuster, Stefan P.; Nigg, Aurélien; Dazio, Valentina; Brilhante, Michael; Rohrbach, Helene; Bernasconi, Odette J.; Büdel, Thomas; Campos-Madueno, Edgar I.; Gobeli Brawand, Stefanie; Schuller, Simone; Endimiani, Andrea; Perreten, Vincent; Willi, Barbara (2020). Poor infection prevention and control standards are associated with environmental contamination with carbapenemase-producing Enterobacterales and other multidrug-resistant bacteria in Swiss companion animal clinics. Antimicrobial resistance and infection control, 9(1) BioMed Central 10.1186/s13756-020-00742-5
Bleichenbacher, Stephanie; Stevens, Marc J.A.; Zurfluh, Katrin; Perreten, Vincent; Endimiani, Andrea; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2020). Environmental dissemination of carbapenemase-producing enterobacteriaceae in rivers in Switzerland. Environmental pollution, 265, p. 115081. Elsevier Science 10.1016/j.envpol.2020.115081
Campos-Madueno, Edgar I.; Bernasconi, Odette J.; Moser, Aline I.; Keller, Peter M.; Luzzaro, Francesco; Maffioli, Carola; Bodmer, Thomas; Kronenberg, Andreas; Endimiani, Andrea (2020). Rapid Increase of CTX-M-Producing Shigella sonnei Isolates in Switzerland: Spread of Common Plasmids and International Clones. Antimicrobial agents and chemotherapy, 64(10) American Society for Microbiology 10.1128/AAC.01057-20
Endimiani, Andrea; Ramette, Alban; Rhoads, Daniel D.; Jacobs, Michael R. (2020). The Evolving Role of the Clinical Microbiology Laboratory in Identifying Resistance in Gram-Negative Bacteria: An Update. Infectious disease clinics of North America, 34(4), pp. 659-676. Elsevier 10.1016/j.idc.2020.08.001
Moser, Aline I.; Kuenzli, Esther; Büdel, Thomas; Campos-Madueno, Edgar I.; Bernasconi, Odette J.; DeCrom-Beer, Susan; Jakopp, Barbara; Mohammed, Ali Haji; Hassan, Nadir Khatib; Fehr, Jan; Zinsstag, Jakob; Hatz, Christoph; Endimiani, Andrea (2021). Travellers returning from the island of Zanzibar colonized with MDR Escherichia coli strains: assessing the impact of local people and other sources. The journal of antimicrobial chemotherapy, 76(2), pp. 330-337. Oxford University Press 10.1093/jac/dkaa457
Campos-Madueno, Edgar I.; Gmuer, Christian; Risch, Martin; Bodmer, Thomas; Endimiani, Andrea (2021). Characterization of a new blaVIM-1-carrying IncN2 plasmid from an Enterobacter hormaechei subsp. steigerwaltii. Journal of global antimicrobial resistance, 24, pp. 325-327. Elsevier 10.1016/j.jgar.2021.01.017

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