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Sypka, Michalina; Zwicker, Marianne; Braga Lagache, Sophie; Uldry, Anne-Christine; Vogel, Monique; Engeroff, Paul (2024). Mouse IgE clone SPE-7 can contain functional mouse IgG. Allergy, 79(9), pp. 2544-2547. Wiley 10.1111/all.16141
Müller, Joachim; Boubaker, Ghalia; Müller, Norbert; Uldry, Anne-Christine; Braga-Lagache, Sophie; Heller, Manfred; Hemphill, Andrew (2024). Investigating Antiprotozoal Chemotherapies with Novel Proteomic Tools-Chances and Limitations: A Critical Review. International journal of molecular sciences, 25(13) MDPI 10.3390/ijms25136903
Bartos, Katalin; Ramakrishnan, Suresh Krishna; Braga-Lagache, Sophie; Hänzi, Barbara; Durussel, Fanny; Prakash Sridharan, Arjun; Zhu, Yao; Sheehan, David; Hynes, Nancy E; Bonny, Olivier; Moor, Matthias B (2023). Renal FGF23 signaling depends on redox protein Memo1 and promotes orthovanadate-sensitive protein phosphotyrosyl phosphatase activity. Journal of cell communication and signaling, 17(3), pp. 705-722. Springer 10.1007/s12079-022-00710-1
Hänggeli, Kai Pascal Alexander; Hemphill, Andrew; Müller, Norbert; Heller, Manfred; Uldry, Anne-Christine; Braga-Lagache, Sophie; Müller, Joachim; Boubaker, Ghalia (2023). Comparative Proteomic Analysis of Toxoplasma gondii RH Wild-Type and Four SRS29B (SAG1) Knock-Out Clones Reveals Significant Differences between Individual Strains. International journal of molecular sciences, 24(13) MDPI 10.3390/ijms241310454
Müller, Joachim; Schlange, Carling; Heller, Manfred; Uldry, Anne-Christine; Braga-Lagache, Sophie; Haynes, Richard K; Hemphill, Andrew (2023). Proteomic characterization of Toxoplasma gondii ME49 derived strains resistant to the artemisinin derivatives artemiside and artemisone implies potential mode of action independent of ROS formation. International journal for parasitology. Drugs and drug resistance, 21, pp. 1-12. Elsevier 10.1016/j.ijpddr.2022.11.005
Memedovski, Roman; Preza, Matías; Müller, Joachim; Kämpfer, Tobias Emmanuel; Rufener, Reto; de Souza, Marcus Vinicius Nora; da Silva, Emerson Teixeira; de Andrade, Gabriel Fernandes; Braga, Sophie; Uldry, Anne-Christine; Buchs, Natasha; Heller, Manfred; Lundström-Stadelmann, Britta (2023). Investigation of the mechanism of action of mefloquine and derivatives against the parasite Echinococcus multilocularis. International journal for parasitology. Drugs and drug resistance, 21, pp. 114-124. Elsevier 10.1016/j.ijpddr.2023.03.002
Müller, Joachim; Preza, Matías; Kaethner, Marc; Rufener, Reto; Braga, Sophie; Uldry, Anne-Christine; Heller, Manfred; Lundström-Stadelmann, Britta (2023). Targeted and non-targeted proteomics to characterize the parasite proteins of Echinococcus multilocularis metacestodes. Frontiers in cellular and infection microbiology, 13, p. 1170763. Frontiers 10.3389/fcimb.2023.1170763
Müller, Joachim; Boubaker, Ghalia; Imhof, Dennis; Hänggeli, Kai; Haudenschild, Noé; Uldry, Anne-Christine; Braga-Lagache, Sophie; Heller, Manfred; Ortega-Mora, Luis-Miguel; Hemphill, Andrew (2022). Differential Affinity Chromatography Coupled to Mass Spectrometry: A Suitable Tool to Identify Common Binding Proteins of a Broad-Range Antimicrobial Peptide Derived from Leucinostatin. Biomedicines, 10(11) MDPI 10.3390/biomedicines10112675
Domanski, Michal; Dedic, Emil; Pérez, Maria Escura; Cléry, Antoine; Campagne, Sébastien; Uldry, Anne-Christine; Braga, Sophie; Heller, Manfred; Rabl, Julius; Afanasyev, Pavel; Boehringer, Daniel; Nováček, Jiří; Allain, Frédéric T; Mühlemann, Oliver (2022). 40S hnRNP particles are a novel class of nuclear biomolecular condensates. Nucleic acids research, 50(11), pp. 6300-6312. Oxford University Press 10.1093/nar/gkac457
Schniering, Janine; Maciukiewicz, Malgorzata; Gabrys, Hubert S; Brunner, Matthias; Blüthgen, Christian; Meier, Chantal; Braga-Lagache, Sophie; Uldry, Anne-Christine; Heller, Manfred; Guckenberger, Matthias; Fretheim, Håvard; Nakas, Christos T.; Hoffmann-Vold, Anna-Maria; Distler, Oliver; Frauenfelder, Thomas; Tanadini-Lang, Stephanie; Maurer, Britta (2022). Computed tomography-based radiomics decodes prognostic and molecular differences in interstitial lung disease related to systemic sclerosis. European respiratory journal, 59(5) European Respiratory Society 10.1183/13993003.04503-2020
Uldry, Anne-Christine; Maciel-Dominguez, Anabel; Jornod, Maïwenn; Buchs, Natasha; Braga-Lagache, Sophie; Brodard, Justine; Jankovic, Jovana; Bonadies, Nicolas; Heller, Manfred (2022). Effect of Sample Transportation on the Proteome of Human Circulating Blood Extracellular Vesicles. International journal of molecular sciences, 23(9), p. 4515. MDPI 10.3390/ijms23094515
Müller, Joachim; Anghel, Nicoleta; Imhof, Dennis; Hänggeli, Kai; Uldry, Anne-Christine; Braga-Lagache, Sophie; Heller, Manfred; Ojo, Kayode K; Ortega-Mora, Luis-Miguel; Van Voorhis, Wesley C; Hemphill, Andrew (2022). Common Molecular Targets of a Quinolone Based Bumped Kinase Inhibitor in Neospora caninum and Danio rerio. International journal of molecular sciences, 23(4) MDPI 10.3390/ijms23042381
Colomé, Núria; Abian, Joaquín; Aloria, Kerman; Arizmendi, Jesús M; Barceló-Batllori, Silvia; Braga-Lagache, Sophie; Burlet-Schiltz, Odile; Carrascal, Montse; Casal, J Ignacio; Chicano-Gálvez, Eduard; Chiva, Cristina; Clemente, Luis Felipe; Elortza, Felix; Estanyol, Josep M; Fernandez-Irigoyen, Joaquín; Fernández-Puente, Patricia; Fidalgo, María José; Froment, Carine; Fuentes, Manuel; Fuentes-Almagro, Carlos; ... (2022). Multi-laboratory experiment PME11 for the standardization of phosphoproteome analysis. Journal of proteomics, 251, p. 104409. Elsevier 10.1016/j.jprot.2021.104409
Anghel, Nicoleta; Müller, Joachim; Serricchio, Mauro; Jelk, Jennifer; Bütikofer, Peter; Boubaker, Ghalia; Imhof, Dennis; Ramseier, Jessica; Desiatkina, Oksana; Paunescu, Emilia; Braga, Sophie Marie-Pierre; Heller, Manfred; Furrer, Julien; Hemphill, Andrew (2021). Cellular and Molecular Targets of Nucleotide-Tagged Trithiolato-Bridged Arene Ruthenium Complexes in the Protozoan Parasites Toxoplasma gondii and Trypanosoma brucei. International journal of molecular sciences, 22(19) MDPI 10.3390/ijms221910787
Zysset-Burri, Denise C.; Schlegel, Irina; Lincke, Joel-Benjamin; Jaggi, Damian; Keller, Irene; Heller, Manfred; Braga Lagache, Sophie; Wolf, Sebastian; Zinkernagel, Martin S. (2021). Understanding the Interactions Between the Ocular Surface Microbiome and the Tear Proteome. Investigative ophthalmology & visual science, 62(10), p. 8. Association for Research in Vision and Ophthalmology 10.1167/iovs.62.10.8
Hallal, Mahmoud; Braga-Lagache, Sophie; Jankovic, Jovana; Simillion, Cedric; Bruggmann, Rémy; Uldry, Anne-Christine; Allam, Ramanjaneyulu; Heller, Manfred; Bonadies, Nicolas (2021). Inference of kinase-signaling networks in human myeloid cell line models by Phosphoproteomics using kinase activity enrichment analysis (KAEA). BMC cancer, 21(1), p. 789. BioMed Central 10.1186/s12885-021-08479-z
Müller, Joachim; Heller, Manfred; Uldry, Anne-Christine; Braga, Sophie; Müller, Norbert (2021). Nitroreductase Activites in Giardia lamblia: ORF 17150 Encodes a Quinone Reductase with Nitroreductase Activity. Pathogens, 10(2), p. 129. MDPI AG 10.3390/pathogens10020129
Cyrta, Joanna; Augspach, Anke; De Filippo, Maria Rosaria; Prandi, Davide; Thienger, Phillip; Benelli, Matteo; Cooley, Victoria; Bareja, Rohan; Wilkes, David; Chae, Sung-Suk; Cavaliere, Paola; Dephoure, Noah; Uldry, Anne-Christine; Braga Lagache, Sophie; Roma, Luca; Cohen, Sandra; Jaquet, Muriel; Brandt, Laura P.; Alshalalfa, Mohammed; Puca, Loredana; ... (2020). Role of specialized composition of SWI/SNF complexes in prostate cancer lineage plasticity. Nature Communications, 11(1), p. 5549. Springer Nature 10.1038/s41467-020-19328-1
Müller, Joachim; Braga, Sophie; Uldry, Anne-Christine; Heller, Manfred; Müller, Norbert (2020). Comparative proteomics of three Giardia lamblia strains: investigation of antigenic variation in the post-genomic era. Parasitology, 147(9), pp. 1008-1018. Cambridge University Press 10.1017/S0031182020000657
Winzer, Pablo; Müller, Joachim; Imhof, Dennis; Ritler, Dominic; Uldry, Anne-Christine; Braga-Lagache, Sophie; Heller, Manfred; Ojo, Kayode K; Van Voorhis, Wesley C; Ortega-Mora, Luis-Miguel; Hemphill, Andrew (2020). Neospora caninum: Differential Proteome of Multinucleated Complexes Induced by the Bumped Kinase Inhibitor BKI-1294. Microorganisms, 8(6) MDPI 10.3390/microorganisms8060801
Briand, Manon L; Gebleux, Remy; Richina, Federica; Correro, M Rita; Grether, Yasmin; Dudal, Yves; Braga-Lagache, Sophie; Heller, Manfred; Beerli, Roger R; Grawunder, Ulf; Corvini, Philippe F-X; Shahgaldian, Patrick (2020). Partially shielded enzymes capable of processing large protein substrates. Chemical communications, 56(38), pp. 5170-5173. Royal Society of Chemistry 10.1039/d0cc01150a
Heller, Manfred; Braga, Sophie; Müller, Norbert; Müller, Joachim (2020). Transfection With Plasmid Causing Stable Expression of a Foreign Gene Affects General Proteome Pattern in Giardia lamblia Trophozoites. Frontiers in cellular and infection microbiology, 10 Frontiers 10.3389/fcimb.2020.602756
Bartos, Katalin; Ramakrishnan, Suresh Krishna; Braga, Sophie; Hänzi, Barbara; Durussel, Fanny; Sridharan, Arjun Prakash; Zhu, Yao; Sheehan, David; Hynes, Nancy E.; Bonny, Olivier; Moor, Matthias B. (2020). Redox protein Memo 1 coordinates FGF23-driven signaling and small Rho-GTPases in the mouse kidney (In Press) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.12.04.402511
Müller, Joachim; Braga, Sophie; Heller, Manfred; Müller, Norbert (2019). Resistance formation to nitro drugs in Giardia lamblia: No common markers identified by comparative proteomics. International journal for parasitology. Drugs and drug resistance, 9, pp. 112-119. Elsevier 10.1016/j.ijpddr.2019.03.002
Nicholson, Pamela; Furrer, Julia; Hässig, Michael; Strauss, Christian; Heller, Manfred; Braga, Sophie; Frey, Joachim (2019). Production of neutralizing antibodies against the secreted Clostridium chauvoei toxin A (CctA) upon blackleg vaccination. Anaerobe, 56, pp. 78-87. Elsevier 10.1016/j.anaerobe.2019.02.011
Brunner, Magdalena; Rüfenacht, Silvia; Bauer, Anina; Erpel, Susanne; Buchs, Natasha; Braga, Sophie Marie-Pierre; Heller, Manfred; Leeb, Tosso; Jagannathan, Vidya; Wiener, Dominique Judith; Welle, Monika Maria (2019). Bald thigh syndrome in sighthounds - Revisiting the cause of a well-known disease. PLoS ONE, 14(2), e0212645. Public Library of Science 10.1371/journal.pone.0212645
Jack, Thomas; Leuenberger, Michele; Ruepp, Marc-David; Vernekar, Sanjeev Kumar V; Thompson, Andrew James; Braga-Lagache, Sophie; Heller, Manfred; Lochner, Martin (2019). Mapping the Orthosteric Binding Site of the Human 5-HT3 Receptor Using Photo-crosslinking Antagonists. ACS chemical neuroscience, 10(1), pp. 438-450. American Chemical Society 10.1021/acschemneuro.8b00327
V'kovski, Philip; Gerber, M; Kelly, Jenna Nicole; Pfänder, Stephanie; Ebert, Nadine; Braga, Sophie Marie-Pierre; Simillion, Cedric André Marie; Portmann, Jasmine; Stalder, Hanspeter; Gaschen, Véronique; Bruggmann, Rémy; Stoffel, Michael Hubert; Heller, Manfred; Dijkman, Ronald; Thiel, Volker Earl (14 September 2018). Determination of host cell proteins constituting the molecular microenvironment of coronavirus replicase complexes by proximity-labeling (bioRxiv). Cold Spring Harbor Laboratory 10.1101/417907
Buchs, Natasha; Braga, Sophie Marie-Pierre; Uldry, Anne-Christine; Brodard, Justine; Debonneville, Christophe; Reynard, Jean-Sébastien; Heller, Manfred (2018). Absolute Quantification of in Grapevine Leaf and Petiole Tissues by Proteomics. Frontiers in Plant Science, 9, p. 1735. Frontiers 10.3389/fpls.2018.01735
Braga, Sophie Marie-Pierre; Buchs, Natasha; Iacovache, Mircea Ioan; Zuber, Benoît; Jackson, Christopher; Heller, Manfred (2016). Robust Label-free, Quantitative Profiling of Circulating Plasma Microparticle (MP) Associated Proteins. Molecular & cellular proteomics, 15(12), pp. 3640-3652. American Society for Biochemistry and Molecular Biology 10.1074/mcp.M116.060491
Leuenberger, Michele; Jack, Thomas; Ruepp, Marc-David; Lagache, Sophie; Heller, Manfred; Mühlemann, Oliver; Thompson, Andrew J.; Lochner, Martin (15 June 2015). Synthesis of photo-crosslinking probes and their application for the site-selective chemical modification of the 5-HT3 receptor (Unpublished). In: Challenges in Chemical Biology (ISACS16). Book of Abstracts. ETH Zürich, Hönggerberg, Switzerland. 15.06.-18.06.2015.
Stettler, Karin; Li, Xiaoming; Sandrock, Björn; Braga, Sophie Marie-Pierre; Heller, Manfred; Dümbgen, Lutz; Suter, Beat (2015). A Drosophila XPD model links cell cycle coordination with neuro-development and suggests links to cancer. Disease models & mechanisms, 8(1), pp. 81-91. Company of Biologists Ltd. 10.1242/dmm.016907
