Leidel, Sebastian Andreas

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2021

Sharma, Puneet; Wu, Jie; Nilges, Benedikt S.; Leidel, Sebastian A. (2021). Humans and other commonly used model organisms are resistant to cycloheximide-mediated biases in ribosome profiling experiments. Nature Communications, 12(1), p. 5094. Springer Nature 10.1038/s41467-021-25411-y

Kim, Yeji; Eggers, Cristian; Shvetsova, Ekaterina; Kleemann, Leon; Sin, Olga; Leidel, Sebastian A. (2021). Analysis of codon-specific translation by ribosome profiling. In: Jackman, Jane E. (ed.) RNA Modification Enzymes. Methods in enzymology: Vol. 658 (pp. 191-223). Elsevier 10.1016/bs.mie.2021.06.025

Kösters, Manuel; Leufken, Johannes; Leidel, Sebastian A. (2021). SMITER—A Python Library for the Simulation of LC-MS/MS Experiments. Genes, 12(3), p. 396. MDPI, Molecular Diversity Preservation International 10.3390/genes12030396

Małecki, Jędrzej M; Odonohue, Marie-Francoise; Kim, Ye; Jakobsson, Magnus E; Gessa, Luca; Pinto, Rita; Wu, Jie; Davydova, Erna; Moen, Anders; Olsen, Jesper V; Thiede, Bernd; Gleizes, Pierre-Emmanuel; Leidel, Sebastian A.; Falnes, Pål Ø (2021). Human METTL18 is a histidine-specific methyltransferase that targets RPL3 and affects ribosome biogenesis and function. Nucleic acids research, 49(6), pp. 3185-3203. Oxford University Press 10.1093/nar/gkab088

Schulze, Stefan; Igiraneza, Aime Bienfait; Kösters, Manuel; Leufken, Johannes; Leidel, Sebastian A.; Garcia, Benjamin A.; Fufezan, Christian; Pohlschroder, Mechthild (2021). Enhancing Open Modification Searches via a Combined Approach Facilitated by Ursgal. Journal of proteome research, 20(4), pp. 1986-1996. American Chemical Society 10.1021/acs.jproteome.0c00799

Termathe, Martin; Leidel, Sebastian A. (2021). Urm1: A Non-Canonical UBL. Biomolecules, 11(2), p. 139. MDPI 10.3390/biom11020139

2020

Renner, Henrik; Grabos, Martha; Becker, Katharina J; Kagermeier, Theresa E; Wu, Jie; Otto, Mandy; Peischard, Stefan; Zeuschner, Dagmar; TsyTsyura, Yaroslav; Disse, Paul; Klingauf, Jürgen; Leidel, Sebastian A; Seebohm, Guiscard; Schöler, Hans R; Bruder, Jan M (2020). A fully automated high-throughput workflow for 3D-based chemical screening in human midbrain organoids. eLife, 9 eLife Sciences Publications 10.7554/eLife.52904

Fan, Rui; Kim, Yung Su; Wu, Jie; Chen, Rui; Zeuschner, Dagmar; Mildner, Karina; Adachi, Kenjiro; Wu, Guangming; Galatidou, Styliani; Li, Jianhua; Schöler, Hans R.; Leidel, Sebastian A.; Bedzhov, Ivan (2020). Wnt/Beta-catenin/Esrrb signalling controls the tissue-scale reorganization and maintenance of the pluripotent lineage during murine embryonic diapause. Nature Communications, 11(1) Springer Nature 10.1038/s41467-020-19353-0

Pabis, Marta; Termathe, Martin; Ravichandran, Keerthiraju E; Kienast, Sandra D.; Krutyhołowa, Rościsław; Sokołowski, Mikołaj; Jankowska, Urszula; Grudnik, Przemysław; Leidel, Sebastian A.; Glatt, Sebastian (2020). Molecular basis for the bifunctional Uba4–Urm1 sulfur‐relay system in tRNA thiolation and ubiquitin‐like conjugation. The EMBO journal, 39(19) EMBO Press 10.15252/embj.2020105087

Leiva, Lorenzo Eugenio; Pincheira, Andrea; Elgamal, Sara; Kienast, Sandra D.; Bravo, Verónica; Leufken, Johannes; Gutiérrez, Daniela; Leidel, Sebastian A.; Ibba, Michael; Katz, Assaf (2020). Modulation of Escherichia coli Translation by the Specific Inactivation of tRNAGly Under Oxidative Stress. Frontiers in genetics, 11(856) Frontiers Media SA 10.3389/fgene.2020.00856

Haas, Astrid; Nilges, Benedikt S.; Leidel, Sebastian A.; Klempnauer, Karl-Heinz (2020). PDCD4 controls the G1/S-phase transition in a telomerase-immortalized epithelial cell line and affects the expression level and translation of multiple mRNAs. Scientific reports, 10(1), p. 2758. Springer Nature 10.1038/s41598-020-59678-w

Pinto, Rita; Vågbø, Cathrine B; Jakobsson, Magnus E; Kim, Yeji; Baltissen, Marijke P; O’Donohue, Marie-Françoise; Guzmán, Ulises H; Małecki, Jędrzej M; Wu, Jie; Kirpekar, Finn; Olsen, Jesper V; Gleizes, Pierre-Emmanuel; Vermeulen, Michiel; Leidel, Sebastian A; Slupphaug, Geir; Falnes, Pål Ø (2020). The human methyltransferase ZCCHC4 catalyses N6-methyladenosine modification of 28S ribosomal RNA. Nucleic acids research, 48(2), pp. 830-846. Oxford University Press 10.1093/nar/gkz1147

2019

Lorent, Julie; Kusnadi, Eric P; Hoef, Vincent; Rebello, Richard J; Leibovitch, Matthew; Ristau, Johannes; Chen, Shan; Lawrence, Mitchell G; Szkop, Krzysztof J; Samreen, Baila; Balanathan, Preetika; Rapino, Francesca; Close, Pierre; Bukczynska, Patricia; Scharmann, Karin; Takizawa, Itsuhiro; Risbridger, Gail P; Selth, Luke A; Leidel, Sebastian A; Lin, Qishan; ... (2019). Translational offsetting as a mode of estrogen receptor α‐dependent regulation of gene expression. The EMBO journal, 38(23), e101323. EMBO Press 10.15252/embj.2018101323

Jacob, Dominik; Thüring, Kathrin; Galliot, Aurellia; Marchand, Virginie; Galvanin, Adeline; Ciftci, Akif; Scharmann, Karin; Stock, Michael; Roignant, Jean-Yves; Leidel, Sebastian Andreas; Motorin, Yuri; Schaffrath, Raffael; Klassen, Roland; Helm, Mark (2019). Absolute Quantification of Noncoding RNA by Microscale Thermophoresis. Angewandte Chemie (International ed.), 58(28), pp. 9565-9569. Wiley-VCH 10.1002/anie.201814377

Ranjan, Namit; Leidel, Sebastian A. (2019). The epitranscriptome in translation regulation: mRNA and tRNA modifications as the two sides of the same coin? FEBS letters, 593(13), pp. 1483-1493. FEBS Press 10.1002/1873-3468.13491

Blasco-Moreno, Bernat; de Campos-Mata, Leire; Böttcher, René; García-Martínez, José; Jungfleisch, Jennifer; Nedialkova, Danny D.; Chattopadhyay, Shiladitya; Gas, María-Eugenia; Oliva, Baldomero; Pérez-Ortín, José E.; Leidel, Sebastian A.; Choder, Mordechai; Díez, Juana (2019). The exonuclease Xrn1 activates transcription and translation of mRNAs encoding membrane proteins. Nature communications, 10(1) Nature Publishing Group 10.1038/s41467-019-09199-6

de Crécy-Lagard, Valérie; Boccaletto, Pietro; Mangleburg, Carl G; Sharma, Puneet; Lowe, Todd M; Leidel, Sebastian A; Bujnicki, Janusz M (2019). Matching tRNA modifications in humans to their known and predicted enzymes. Nucleic acids research, 47(5), pp. 2143-2159. Oxford University Press 10.1093/nar/gkz011

2018

Sarin, L. Peter; Kienast, Sandra D.; Leufken, Johannes; Ross, Robert L.; Dziergowska, Agnieszka; Debiec, Katarzyna; Sochacka, Elzbieta; Limbach, Patrick A.; Fufezan, Christian; Drexler, Hannes C.A.; Leidel, Sebastian Andreas (2018). Nano LC-MS using capillary columns enables accurate quantification of modified ribonucleosides at low femtomol levels. RNA - a publication of the RNA Society, 24(10), pp. 1403-1417. Cold Spring Harbor Laboratory Press 10.1261/rna.065482.117

Taudière, Adrien; Bellanger, Jean-Michel; Carcaillet, Christopher; Hugot, Laetitia; Kjellberg, Finn; Lecanda, Aarón; Lesne, Annick; Moreau, Pierre-Arthur; Scharmann, Karin; Leidel, Sebastian Andreas; Richard, Franck (2018). Diversity of foliar endophytic ascomycetes in the endemic Corsican pine forests. Fungal ecology, 36, pp. 128-140. Elsevier 10.1016/j.funeco.2018.07.008

Rode, Sandra; Ohm, Henrike; Anhäuser, Lea; Wagner, Marina; Rosing, Mechthild; Deng, Xiaobing; Sin, Olga; Leidel, Sebastian Andreas; Storkebaum, Erik; Rentmeister, Andrea; Zhu, Sijun; Rumpf, Sebastian (2018). Differential Requirement for Translation Initiation Factor Pathways during Ecdysone-Dependent Neuronal Remodeling in Drosophila. Cell reports, 24(9), 2287-2299.e4. Cell Press 10.1016/j.celrep.2018.07.074

Jakobsson, Magnus E.; Małecki, Jędrzej M.; Halabelian, Levon; Nilges, Benedikt S.; Pinto, Rita; Kudithipudi, Srikanth; Munk, Stephanie; Davydova, Erna; Zuhairi, Fawzi R.; Arrowsmith, Cheryl H.; Jeltsch, Albert; Leidel, Sebastian Andreas; Olsen, Jesper V.; Falnes, Pål Ø. (2018). The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates. Nature communications, 9(1) Nature Publishing Group 10.1038/s41467-018-05646-y

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