Fotiadis, Dimitrios

Hirschi, Stephan; Lemmin, Thomas; Ayoub, Nooraldeen; Kalbermatter, David; Pellegata, Daniele; Ucurum, Zöhre; Gertsch, Jürg; Fotiadis, Dimitrios (2024). Structural insights into the mechanism and dynamics of proteorhodopsin biogenesis and retinal scavenging. Nature Communications, 15(1), p. 6950. Springer Nature 10.1038/s41467-024-50960-3

Harder, Daniel; Ritzmann, Noah; Ucurum Fotiadis, Zöhre; Müller, Daniel J; Fotiadis, Dimitrios (2024). Light Color-Controlled pH-Adjustment of Aqueous Solutions Using Engineered Proteoliposomes. Advanced science, 11(15), e2307524. Wiley 10.1002/advs.202307524

Kara, Nilufer; Ayoub, Nooraldeen; Ilgu, Huseyin; Fotiadis, Dimitrios; Ilgu, Muslum (2023). Aptamers Targeting Membrane Proteins for Sensor and Diagnostic Applications. Molecules, 28(9) MDPI 10.3390/molecules28093728

Ayoub, Nooraldeen; Roth, Patrick; Ucurum, Zöhre; Fotiadis, Dimitrios; Hirschi, Stephan (2023). Structural and biochemical insights into His-tag-induced higher-order oligomerization of membrane proteins by cryo-EM and size exclusion chromatography. Journal of structural biology, 215(1), p. 107924. Elsevier 10.1016/j.jsb.2022.107924

Kalbermatter, David; Jeckelmann, Jean-Marc; Wyss, Marianne; Shrestha, Neeta; Pliatsika, Dimanthi; Riedl, Rainer; Lemmin, Thomas; Plattet, Philippe; Fotiadis, Dimitrios (2023). Structure and supramolecular organization of the canine distemper virus attachment glycoprotein. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 120(6), e2208866120. National Academy of Sciences NAS 10.1073/pnas.2208866120

Kantipudi, Satish; Harder, Daniel; Fotiadis, Dimitrios (2023). Characterization of substrates and inhibitors of the human heterodimeric transporter 4F2hc-LAT1 using purified protein and the scintillation proximity radioligand binding assay. Frontiers in physiology, 14(1148055), p. 1148055. Frontiers Research Foundation 10.3389/fphys.2023.1148055

Jeckelmann, Jean-Marc; Zaugg, Jonas; Morozova, Veronika; Müller, Jennifer; Kantipudi, Satish; Schröder, Mariana; Graff, Julien; Albrecht, Christiane; Altmann, Karl-Heinz; Gertsch, Jürg; Fotiadis, Dimitrios (2022). Structure, Function and Pharmacology of SLC7 Family Members and Homologues. CHIMIA, 76(12), pp. 1011-1018. Schweizerische Chemische Gesellschaft 10.2533/chimia.2022.1011

Hirschi, Stephan; Ward, Thomas R; Meier, Wolfgang P; Müller, Daniel J; Fotiadis, Dimitrios (2022). Synthetic Biology: Bottom-Up Assembly of Molecular Systems. Chemical reviews, 122(21), pp. 16294-16328. American Chemical Society 10.1021/acs.chemrev.2c00339

Jeckelmann, Jean-Marc; Lemmin, Thomas; Schlapschy, Martin; Skerra, Arne; Fotiadis, Dimitrios (2022). Structure of the human heterodimeric transporter 4F2hc-LAT2 in complex with Anticalin, an alternative binding protein for applications in single-particle cryo-EM. Scientific reports, 12(1), p. 18269. Springer Nature 10.1038/s41598-022-23270-1

Ruggeri, Francesca; Schwemmer, Christian; Stauffer, Mirko; Nicollier, Philippe; Figueiredo da Silva, Jacqueline; Bosshart, Patrick D; Kochems, Kirstin; Fotiadis, Dimitrios; Knoll, Armin; Wolf, Heiko (2022). Placement of Biological Membrane Patches in a Nanofluidic Gap With Control Over Position and Orientation. Advanced materials interfaces, 9(23), p. 2200941. Wiley 10.1002/admi.202200941

Stauffer, Mirko; Jeckelmann, Jean-Marc; Ilgü, Hüseyin; Ucurum, Zöhre; Boggavarapu, Rajendra; Fotiadis, Dimitrios (2022). Peptide transporter structure reveals binding and action mechanism of a potent PEPT1 and PEPT2 inhibitor. Communications chemistry, 5(1) Springer Nature 10.1038/s42004-022-00636-0

Shrestha, Neeta; Gall, Flavio Max; Mathieu, Cyrille; Hierweger, Melanie Michaela; Brügger, Melanie; Alves, Marco P.; Vesin, Jonathan; Banfi, Damiano; Kalbermatter, David; Horvat, Branka; Chambon, Marc; Turcatti, Gerardo; Fotiadis, Dimitrios; Riedl, Rainer; Plattet, Philippe (2021). Highly Potent Host-Specific Small-Molecule Inhibitor of Paramyxovirus and Pneumovirus Replication with High Resistance Barrier. mBio, 12(6), e0262121. American Society for Microbiology 10.1128/mBio.02621-21

Ilgü, Hüseyin; Jeckelmann, Jean-Marc; Kalbermatter, David; Ucurum, Zöhre; Lemmin, Thomas; Fotiadis, Dimitrios (2021). High-resolution structure of the amino acid transporter AdiC reveals insights into the role of water molecules and networks in oligomerization and substrate binding. BMC biology, 19(1), p. 179. BioMed Central 10.1186/s12915-021-01102-4

Stauffer, Mirko; Ucurum, Zöhre; Harder, Daniel; Fotiadis, Dimitrios (2021). Engineering and functional characterization of a proton-driven β-lactam antibiotic translocation module for bionanotechnological applications. Scientific reports, 11(1), p. 17205. Springer Nature 10.1038/s41598-021-96298-4

Kantipudi, Satish; Harder, Daniel; Bonetti, Sara; Fotiadis, Dimitrios; Jeckelmann, Jean-Marc (2021). Pichia pastoris and the Recombinant Human Heterodimeric Amino Acid Transporter 4F2hc-LAT1: From Clone Selection to Pure Protein. Methods and protocols, 4(3) MDPI AG 10.3390/mps4030051

Hirschi, Stephan; Kalbermatter, David; Ucurum, Zöhre; Lemmin, Thomas; Fotiadis, Dimitrios (2021). Cryo-EM structure and dynamics of the green-light absorbing proteorhodopsin. Nature communications, 12(1), p. 4107. Nature Publishing Group 10.1038/s41467-021-24429-6

Shrestha, Neeta; Gall, Flavio M; Vesin, Jonathan; Chambon, Marc; Turcatti, Gerardo; Fotiadis, Dimitrios; Riedl, Rainer; Plattet, Philippe (2021). Antiviral Screen against Canine Distemper Virus-Induced Membrane Fusion Activity. Viruses, 13(1) MDPI 10.3390/v13010128

Bosshart, Patrick D.; Charles, Roch-Philippe; Garibsingh, Rachel-Ann A; Schlessinger, Avner; Fotiadis, Dimitrios (2021). SLC16 Family: From Atomic Structure to Human Disease. Trends in biochemical sciences, 46(1), pp. 28-40. Elsevier Current Trends 10.1016/j.tibs.2020.07.005

Bosshart, Patrick D.; Kalbermatter, David; Bonetti, Sara; Fotiadis, Dimitrios (2021). The making of a potent L-lactate transport inhibitor. Communications chemistry, 4(1) Springer Nature 10.1038/s42004-021-00564-5

Kantipudi, Satish; Jeckelmann, Jean-Marc; Ucurum, Zöhre; Bosshart, Patrick D.; Fotiadis, Dimitrios (2020). The Heavy Chain 4F2hc Modulates the Substrate Affinity and Specificity of the Light Chains LAT1 and LAT2. International journal of molecular sciences, 21(20) MDPI 10.3390/ijms21207573

Jeckelmann, Jean-Marc; Fotiadis, Dimitrios (2020). Sub-Nanometer Cryo-EM Density Map of the Human Heterodimeric Amino Acid Transporter 4F2hc-LAT2. International journal of molecular sciences, 21(19) MDPI 10.3390/ijms21197094

Stauffer, Mirko; Hirschi, Stephan; Ucurum, Zöhre; Harder, Daniel; Schlesinger, Ramona; Fotiadis, Dimitrios (2020). Engineering and Production of the Light-Driven Proton Pump Bacteriorhodopsin in 2D Crystals for Basic Research and Applied Technologies. Methods and protocols, 3(3) MDPI AG 10.3390/mps3030051

Hirschi, Stephan; Kalbermatter, David; Ucurum, Zöhre; Fotiadis, Dimitrios (2020). Cryo-electron microscopic and X-ray crystallographic analysis of the light-driven proton pump proteorhodopsin reveals a pentameric assembly. Journal of structural biology: X, 4(100024), p. 100024. Elsevier 10.1016/j.yjsbx.2020.100024

Hirschi, Stephan; Fotiadis, Dimitrios (2020). Purification of Membrane Proteins by Affinity Chromatography with On-Column Protease Cleavage. In: Perez, Camilo; Maier, Timm (eds.) Expression, Purification, and Structural Biology of Membrane Proteins. Methods in Molecular Biology: Vol. 2127 (pp. 139-150). Humana Press/Springer 10.1007/978-1-0716-0373-4_10

Kalbermatter, David; Shrestha, Neeta; Gall, Flavio M.; Wyss, Marianne; Riedl, Rainer; Plattet, Philippe; Fotiadis, Dimitrios (2020). Cryo-EM structure of the prefusion state of canine distemper virus fusion protein ectodomain. Journal of structural biology: X, 4, p. 100021. Elsevier 10.1016/j.yjsbx.2020.100021

Lemmin, Thomas; Kalbermatter, David; Harder, Daniel; Plattet, Philippe; Fotiadis, Dimitrios (2020). Structures and dynamics of the novel S1/S2 protease cleavage site loop of the SARS-CoV-2 spike glycoprotein. Journal of structural biology: X, 4, p. 100038. Elsevier 10.1016/j.yjsbx.2020.100038

Bourantas, Christos V; Zanchin, Thomas; Sakellarios, Antonis; Karagiannis, Alexios; Ramasamy, Anantharaman; Yamaji, Kyohei; Taniwaki, Masanori; Heg, Dik; Moschovitis, Aris; Fotiadis, Dimitrios; Mihalis, Lampros; Baumbach, Andreas; Torii, Ryo; Serruys, Patrick; Garcia-Garcia, Hector M; Windecker, Stephan; Räber, Lorenz (2019). Implications of the local haemodynamic forces on the phenotype of coronary plaques. Heart (British Cardiac Society), 105(14), pp. 1078-1086. BMJ Publishing Group 10.1136/heartjnl-2018-314086

Bosshart, Patrick D.; Kalbermatter, David; Bonetti, Sara; Fotiadis, Dimitrios (2019). Mechanistic basis of L-lactate transport in the SLC16 solute carrier family. Nature communications, 10(1), p. 2649. Nature Publishing Group 10.1038/s41467-019-10566-6

Fotiadis, Dimitrios; Jeckelmann, Jean-Marc (2019). The structure of the human 4F2hc-LAT1 heteromeric amino acid transporter. Science China. Life sciences, 62(6), pp. 848-850. Springer 10.1007/s11427-019-9558-5

Gaitzsch, Jens; Hirschi, Stephan; Freimann, Sven; Fotiadis, Dimitrios; Meier, Wolfgang (2019). Directed Insertion of Light-Activated Proteorhodopsin into Asymmetric Polymersomes from an ABC Block Copolymer. Nano letters, 19(4), pp. 2503-2508. American Chemical Society 10.1021/acs.nanolett.9b00161

Jeckelmann, Jean-Marc; Fotiadis, Dimitrios (2019). Volta Phase Plate Cryo-EM Structure of the Human Heterodimeric Amino Acid Transporter 4F2hc-LAT2. International journal of molecular sciences, 20(4) MDPI 10.3390/ijms20040931

Hirschi, Stephan; Fischer, Nathalie; Kalbermatter, David; Laskowski, P R; Ucurum, Zöhre; Müller, D J; Fotiadis, Dimitrios (2019). Design and assembly of a chemically switchable and fluorescently traceable light-driven proton pump system for bionanotechnological applications. Scientific reports, 9(1), p. 1046. Springer Nature 10.1038/s41598-018-37260-9

Bosshart, Patrick; Fotiadis, Dimitrios (2019). Secondary Active Transporters. Sub-cellular biochemistry, 92, pp. 275-299. Springer 10.1007/978-3-030-18768-2_9

Bosshart, Patrick; Kalbermatter, David; Bonetti, Sara; Fotiadis, Dimitrios (2019). Structure and function of a monocarboxylate transporter homolog specific for L-lactate. Molecular & cellular oncology, 6(6), e1646605. Taylor & Francis 10.1080/23723556.2019.1646605

Sakellarios, Antonis; Räber, Lorenz; Bourantas, Christos; Exarchos, Themis; Athanasiou, Lambros; Pelosi, Gualtiero; Parodi, Oberdan; Koskinas, Konstantinos; Naka, Katerina; Michalis, Lampros; Serruys, Patrick Wjc; Garcia-Garcia, Hector; Windecker, Stephan; Fotiadis, Dimitrios (2016). Prediction of Atherosclerotic Plaque Development in an in Vivo Coronary Arterial Segment Based on a Multi-level Modeling Approach. IEEE transactions on bio-medical engineering, 64(8), pp. 1721-1730. Institute of Electrical and Electronics Engineers 10.1109/TBME.2016.2619489

Bippes, Christian A.; Ge, Lin; Meury, Marcel; Harder, Daniel; Ucurum, Zöhre; Daniel, Hannelore; Fotiadis, Dimitrios; Müller, Daniel J. (2013). Peptide transporter DtpA has two alternate conformations, one of which is promoted by inhibitor binding. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 110(42), E3978-E3986. National Academy of Sciences NAS 10.1073/pnas.1312959110

Boggavarapu, Rajendra; Jeckelmann, Jean-Marc; Harder, Daniel; Schneider, Philipp; Ucurum, Zöhre; Hediger, Matthias; Fotiadis, Dimitrios (2013). Expression, purification and low-resolution structure of human vitamin C transporter SVCT1 (SLC23A1). PLoS ONE, 8(10), e76427. Public Library of Science 10.1371/journal.pone.0076427

Fotiadis, Dimitrios; Kanai, Yoshikatsu; Palacín, Manuel (2013). The SLC3 and SLC7 families of amino acid transporters. Molecular aspects of medicine, 34(2-3), pp. 139-158. Elsevier 10.1016/j.mam.2012.10.007

Bodoy, Susanna; Fotiadis, Dimitrios; Stoeger, Claudia; Kanai, Yoshikatsu; Palacín, Manuel (2013). The small SLC43 family: facilitator system l amino acid transporters and the orphan EEG1. Molecular aspects of medicine, 34(2-3), pp. 638-645. Elsevier 10.1016/j.mam.2012.12.006

Costa, Meritxell; Rosell, Albert; Álvarez-Marimon, Elena; Zorzano, Antonio; Fotiadis, Dimitrios; Palacín, Manuel (2013). Expression of human heteromeric amino acid transporters in the yeast Pichia pastoris. Protein expression and purification, 87(1), pp. 35-40. Elsevier 10.1016/j.pep.2012.10.003

Fotiadis, Dimitrios; Müller, Daniel J (2013). High-resolution imaging of 2D outer membrane protein F (OmpF) crystals by atomic force microscopy. In: Schmidt-Krey, Ingeborg; Cheng, Yifan (eds.) Electron Crystallography of Soluble and Membrane Proteins. Methods in Molecular Biology: Vol. 955 (pp. 461-474). Humana Press 10.1007/978-1-62703-176-9_24

Harder, Daniel; Fotiadis, Dimitrios (2012). Measuring substrate binding and affinity of purified membrane transport proteins using the scintillation proximity assay. Nature protocols, 7(9), pp. 1569-78. London: Nature Publishing Group 10.1038/nprot.2012.090

Fotiadis, Dimitrios (2012). Atomic force microscopy for the study of membrane proteins. Current opinion in biotechnology, 23(4), pp. 510-5. Amsterdam: Elsevier 10.1016/j.copbio.2011.11.032

Jeckelmann, Jean-Marc; Harder, Daniel; Mari, Stefania A; Meury, Marcel; Ucurum, Zöhre; Müller, Daniel J; Erni, Bernhard; Fotiadis, Dimitrios (2011). Structure and function of the glucose PTS transporter from Escherichia coli. Journal of structural biology, 176(3), pp. 395-403. San Diego, Calif.: Elsevier 10.1016/j.jsb.2011.09.012

Bergeron, Marc J.; Boggavarapu, Rajendra; Meury, Marcel; Ucurum, Zöhre; Caron, Luc; Isenring, Paul; Hediger, Matthias A.; Fotiadis, Dimitrios (2011). Frog oocytes to unveil the structure and supramolecular organization of human transport proteins. PLoS ONE, 6(7), e21901. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0021901

Meury, Marcel; Harder, Daniel; Ucurum, Zöhre; Boggavarapu, Rajendra; Jeckelmann, Jean-Marc; Fotiadis, Dimitrios (2011). Structure determination of channel and transport proteins by high-resolution microscopy techniques. Biological chemistry, 392(1-2), pp. 143-50. Berlin: Walter de Gruyter 10.1515/BC.2011.004

Jeckelmann, Jean-Marc; Palacin, Manuel; Fotiadis, Dimitrios (2011). A tool for the qualitative comparison of membrane-embedded and detergent-solubilized membrane protein structures in projection. Journal of structural biology, 173(2), pp. 375-81. San Diego, Calif.: Elsevier 10.1016/j.jsb.2010.09.005

Casagrande, Fabio; Harder, Daniel; Schenk, Andreas; Meury, Marcel; Ucurum, Zohre; Engel, Andreas; Weitz, Dietmar; Daniel, Hannelore; Fotiadis, Dimitrios (2009). Projection structure of DtpD (YbgH), a prokaryotic member of the peptide transporter family. Journal of molecular biology, 394(4), pp. 708-17. Amsterdam: Elsevier 10.1016/j.jmb.2009.09.048

Bippes, Christian A; Zeltina, Antra; Casagrande, Fabio; Ratera, Merce; Palacin, Manuel; Muller, Daniel J; Fotiadis, Dimitrios (2009). Substrate binding tunes conformational flexibility and kinetic stability of an amino acid antiporter. Journal of biological chemistry, 284(28), pp. 18651-63. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M109.004267

Jastrzebska, Beata; Golczak, Marcin; Fotiadis, Dimitrios; Engel, Andreas; Palczewski, Krzysztof (2009). Isolation and functional characterization of a stable complex between photoactivated rhodopsin and the G protein, transducin. FASEB journal, 23(2), pp. 371-81. Bethesda, Md.: Federation of American Societies for Experimental Biology 10.1096/fj.07-114835

Casagrande, Fabio; Ratera, Merce; Schenk, Andreas D; Chami, Mohamed; Valencia, Eva; Lopez, Jesus Maria; Torrents, David; Engel, Andreas; Palacin, Manuel; Fotiadis, Dimitrios (2008). Projection structure of a member of the amino acid/polyamine/organocation transporter superfamily. Journal of biological chemistry, 283(48), pp. 33240-8. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M806917200

Harder, Daniel; Stolz, Jürgen; Casagrande, Fabio; Obrdlik, Petr; Weitz, Dietmar; Fotiadis, Dimitrios; Daniel, Hannelore (2008). DtpB (YhiP) and DtpA (TppB, YdgR) are prototypical proton-dependent peptide transporters of Escherichia coli. FEBS journal, 275(13), pp. 3290-8. Oxford: Wiley-Blackwell 10.1111/j.1742-4658.2008.06477.x

Whorton, Matthew R; Jastrzebska, Beata; Park, Paul S-H; Fotiadis, Dimitrios; Engel, Andreas; Palczewski, Krzysztof; Sunahara, Roger K (2008). Efficient coupling of transducin to monomeric rhodopsin in a phospholipid bilayer. Journal of biological chemistry, 283(7), pp. 4387-94. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M703346200

Arechaga, Ignacio; Fotiadis, Dimitrios (2007). Reconstitution of mitochondrial ATP synthase into lipid bilayers for structural analysis. Journal of structural biology, 160(3), pp. 287-94. San Diego, Calif.: Elsevier 10.1016/j.jsb.2007.09.007

Hoogenboom, Bart W; Suda, Kitaru; Engel, Andreas; Fotiadis, Dimitrios (2007). The supramolecular assemblies of voltage-dependent anion channels in the native membrane. Journal of molecular biology, 370(2), pp. 246-55. Amsterdam: Elsevier 10.1016/j.jmb.2007.04.073

Reig, Núria; del Rio, César; Casagrande, Fabio; Ratera, Mercè; Gelpí, Josep Lluís; Torrents, David; Henderson, Peter J F; Xie, Hao; Baldwin, Stephen A; Zorzano, Antonio; Fotiadis, Dimitrios; Palacín, Manuel (2007). Functional and structural characterization of the first prokaryotic member of the L-amino acid transporter (LAT) family: a model for APC transporters. Journal of biological chemistry, 282(18), pp. 13270-81. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M610695200

Weitz, Dietmar; Harder, Daniel; Casagrande, Fabio; Fotiadis, Dimitrios; Obrdlik, Petr; Kelety, Bela; Daniel, Hannelore (2007). Functional and structural characterization of a prokaryotic peptide transporter with features similar to mammalian PEPT1. Journal of biological chemistry, 282(5), pp. 2832-9. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M604866200