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Zindel, Joel; Mittner, Jonas; Bayer, Julia; April-Monn, Simon L.; Kohler, Andreas; Nusse, Ysbrand; Dosch, Michel; Büchi, Isabel; Sanchez-Taltavull, Daniel; Dawson, Heather; Gomez de Agüero, Mercedes; Asahina, Kinji; Kubes, Paul; Macpherson, Andrew J.; Stroka, Deborah; Candinas, Daniel (2021). Intraperitoneal microbial contamination drives post-surgical peritoneal adhesions by mesothelial EGFR-signaling. Nature Communications, 12(1), p. 7316. Springer Nature 10.1038/s41467-021-27612-x
Rollenske, Tim; Burkhalter, Sophie; Muerner, Lukas; von Gunten, Stephan; Lukasiewicz, Jolanta; Wardemann, Hedda; Macpherson, Andrew J. (2021). Parallelism of intestinal secretory IgA shapes functional microbial fitness. Nature, 598(7882), pp. 657-661. Springer Nature 10.1038/s41586-021-03973-7
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
Jackson, Matthew A; Pearson, Claire; Ilott, Nicholas E; Huus, Kelsey E; Hegazy, Ahmed N; Webber, Jonathan; Finlay, B Brett; Macpherson, Andrew J.; Powrie, Fiona; Lam, Lilian H (2021). Accurate identification and quantification of commensal microbiota bound by host immunoglobulins. Microbiome, 9(1), p. 33. BioMed Central 10.1186/s40168-020-00992-w
Li, Hai; Limenitakis, Julien Periclis Jean; Greiff, Victor; Yilmaz, Bahtiyar; Schären, Olivier Pascal; Urbaniak, Camilla; Zünd, Mirjam; Lawson, Melissa; Young, Ian D.; Rupp, Sandra; Heikenwälder, Mathias; McCoy, Kathleen; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2020). Mucosal or systemic microbiota exposures shape the B cell repertoire. Nature, 584(7820), pp. 274-278. Springer Nature 10.1038/s41586-020-2564-6
Mezö, Charlotte; Dokalis, Nikolaos; Mossad, Omar; Staszewski, Ori; Neuber, Jana; Yilmaz, Bahtiyar; Schnepf, Daniel; Gomez de Agüero, Mercedes; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J.; Meyer-Luehmann, Melanie; Staeheli, Peter; Blank, Thomas; Prinz, Marco; Erny, Daniel (2020). Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer's disease. Acta neuropathologica communications, 8(1), p. 119. BioMed Central 10.1186/s40478-020-00988-5
Healy, Marc E; Boege, Yannick; Hodder, Michael C; Böhm, Friederike; Malehmir, Mohsen; Scherr, Anna-Lena; Jetzer, Jasna; Chan, Lap Kwan; Parrotta, Rossella; Jacob, Kurt; Clerbaux, Laure-Alix; Kreutzer, Susanne; Campbell, Andrew; Gilchrist, Ella; Gilroy, Kathryn; Rodewald, Ann-Katrin; Honcharova-Biletska, Hanna; Schimmer, Roman; Vélez, Karelia; Büeler, Simone; ... (2020). MCL1 Is Required for Maintenance of Intestinal Homeostasis and Prevention of Carcinogenesis in Mice. Gastroenterology, 159(1), pp. 183-199. Elsevier 10.1053/j.gastro.2020.03.017
Zimmermann, Jakob; Macpherson, Andrew J. (2020). Breast Milk Modulates Transgenerational Immune Inheritance. Cell, 181(6), pp. 1202-1204. Cell Press 10.1016/j.cell.2020.05.030
Schaupp, Laura; Muth, Sabine; Rogell, Leif; Kofoed-Branzk, Michael; Melchior, Felix; Lienenklaus, Stefan; Ganal-Vonarburg, Stephanie C.; Klein, Matthias; Guendel, Fabian; Hain, Tobias; Schütze, Kristian; Grundmann, Ulrike; Schmitt, Vanessa; Dorsch, Martina; Spanier, Julia; Larsen, Pia-Katharina; Schwanz, Thomas; Jäckel, Sven; Reinhardt, Christoph; Bopp, Tobias; ... (2020). Microbiota-Induced Type I Interferons Instruct a Poised Basal State of Dendritic Cells. Cell, 181(5), 1080-1096.e19. Cell Press 10.1016/j.cell.2020.04.022
Ganal-Vonarburg, Stephanie C.; Hornef, Mathias W; Macpherson, Andrew J. (2020). Microbial-host molecular exchange and its functional consequences in early mammalian life. Science, 368(6491), pp. 604-607. American Association for the Advancement of Science 10.1126/science.aba0478
Obata, Yuuki; Castaño, Álvaro; Boeing, Stefan; Bon-Frauches, Ana Carina; Fung, Candice; Fallesen, Todd; Gomez de Agüero, Mercedes; Yilmaz, Bahtiyar; Lopes, Rita; Huseynova, Almaz; Horswell, Stuart; Maradana, Muralidhara Rao; Boesmans, Werend; Vanden Berghe, Pieter; Murray, Andrew J; Stockinger, Brigitta; Macpherson, Andrew J.; Pachnis, Vassilis (2020). Neuronal programming by microbiota regulates intestinal physiology. Nature, 578(7794), pp. 284-289. Springer Nature 10.1038/s41586-020-1975-8
Rollenske, Tim; Macpherson, Andrew J. (2020). Anti-commensal Ig-from enormous diversity to clear function. Mucosal immunology, 13(1), pp. 1-2. Springer Nature 10.1038/s41385-019-0223-8
Wotzka, Sandra Y; Kreuzer, Markus; Maier, Lisa; Arnoldini, Markus; Nguyen, Bidong D; Brachmann, Alexander O; Berthold, Dorothée L; Zünd, Mirjam; Hausmann, Annika; Bakkeren, Erik; Hoces, Daniel; Gül, Ersin; Beutler, Markus; Dolowschiak, Tamas; Zimmermann, Michael; Fuhrer, Tobias; Moor, Kathrin; Sauer, Uwe; Typas, Athanasios; Piel, Jörn; ... (2019). Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice. Nature microbiology, 4(12), pp. 2164-2174. Springer Nature 10.1038/s41564-019-0568-5
Yilmaz, Bahtiyar; Juillerat, Pascal; Øyås, Ove; Ramon, Charlotte; Bravo, Francisco Damian; Franc, Yannick; Fournier, Nicolas; Michetti, Pierre; Mueller, Christoph; Geuking, Markus; Pittet, Valerie E H; Maillard, Michel H; Rogler, Gerhard; Wiest, Reiner; Stelling, Jörg; Macpherson, Andrew J. (2019). Publisher Correction: Microbial network disturbances in relapsing refractory Crohn's disease. Nature medicine, 25(4), p. 701. Springer Nature 10.1038/s41591-019-0411-9
Maubach, Johannes; Christen, Stefan; Macpherson, Andrew J.; Worni, Mathias (2019). Endoscopic rescue therapy of a distally perforated, retroperitoneal stent after EUS-guided pancreaticogastrostomy. VideoGIE, 4(4), pp. 169-171. Elsevier 10.1016/j.vgie.2019.01.002
Grootjans, Joep; Krupka, Niklas; Hosomi, Shuhei; Matute, Juan D.; Hanley, Thomas; Saveljeva, Svetlana; Gensollen, Thomas; Heijmans, Jarom; Li, Hai; Limenitakis, Julien P.; Ganal-Vonarburg, Stephanie C.; Suo, Shengbao; Luoma, Adrienne M.; Shimodaira, Yosuke; Duan, Jinzhi; Shih, David Q.; Conner, Margaret E.; Glickman, Jonathan N.; Fuhler, Gwenny M.; Palm, Noah W.; ... (2019). Epithelial endoplasmic reticulum stress orchestrates a protective IgA response. Science, 363(6430), pp. 993-998. American Association for the Advancement of Science 10.1126/science.aat7186
Yilmaz, Bahtiyar; Juillerat, Pascal; Øyås, Ove; Ramon, Charlotte; Bravo, Francisco Damian; Franc, Yannick; Fournier, Nicolas; Michetti, Pierre; Müller, Christoph; Geuking, Markus; Pittet, Valerie E H; Maillard, Michel H; Rogler, Gerhard; Wiest, Reiner; Stelling, Jörg; Macpherson, Andrew J. (2019). Microbial network disturbances in relapsing refractory Crohn's disease. Nature medicine, 25(2), pp. 323-336. Nature Publishing Group 10.1038/s41591-018-0308-z
Uchimura, Yasuhiro; Fuhrer, Tobias; Li, Hai; Lawson, Melissa A.; Zimmermann, Michael; Yilmaz, Bahtiyar; Zindel, Joel; Ronchi, Francesca; Sorribas Olivera, Marcel; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Gomez de Agüero, Mercedes; McCoy, Kathleen D.; Sauer, Uwe; Macpherson, Andrew J. (2018). Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response. Immunity, 49(3), 545-559.e5. Cell Press 10.1016/j.immuni.2018.08.004
Bauché, David; Joyce-Shaikh, Barbara; Jain, Renu; Grein, Jeff; Ku, Karin S; Blumenschein, Wendy M; Ganal-Vonarburg, Stephanie C.; Wilson, Douglas C; McClanahan, Terrill K; Malefyt, Rene de Waal; Macpherson, Andrew J.; Annamalai, Lakshmanan; Yearley, Jennifer H; Cua, Daniel J (2018). LAG3 Regulatory T Cells Restrain Interleukin-23-Producing CX3CR1 Gut-Resident Macrophages during Group 3 Innate Lymphoid Cell-Driven Colitis. Immunity, 49(2), 342-352.e5. Cell Press 10.1016/j.immuni.2018.07.007
Yilmaz, Bahtiyar; Spalinger, Marianne R; Biedermann, Luc; Franc, Yannick; Fournier, Nicolas; Rossel, Jean-Benoit; Juillerat, Pascal; Rogler, Gerhard; Macpherson, Andrew J.; Scharl, Michael (2018). The presence of genetic risk variants within PTPN2 and PTPN22 is associated with intestinal microbiota alterations in Swiss IBD cohort patients. PLoS ONE, 13(7), e0199664. Public Library of Science 10.1371/journal.pone.0199664
Geuking, Markus B.; McCoy, Kathleen; Macpherson, Andrew J. (2013). Metabolites from intestinal microbes shape Treg. Cell research, 23(12), pp. 1339-1340. Nature Publishing Group 10.1038/cr.2013.125
Juillerat, Pascal; Sokol, Harry; Fowler, Sharyle A.; Froehlich, Florian; Vader, John-Paul; Yajnik, Vijay; Beaugerie, Laurent; Macpherson, Andrew J.; Cosnes, Jacques; Korzenik, Joshua R. (2013). 950 Factors associated with durable response to infliximab 5 years and beyond: a multi center international cohort. Gastroenterology, 144(5, Suppl. 1), p. 172. Elsevier
Xiong, Xuejian; Frank, Daniel N.; Robertson, Charles E.; Hung, Stacy S.; Markle, Janet; Canty, Angelo J.; McCoy, Kathy D.; Macpherson, Andrew J.; Poussier, Philippe; Danska, Jayne S.; Parkinson, John (2012). Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing. PLoS ONE, 7(4), e36009. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0036009
Kwong Chung, Cheong KC; Cahenzli, Julia; Macpherson, Andrew J.; McCoy, Kathy D.; Geuking., Markus (2012). Compensatory immune mechanisms ensure mucosal immune homeostasis following colonization with commensal bacteria. In: Cross Talk Symposium Paris 2nd to 4th September.
Hapfelmeier, Siegfried; Macpherson, Andrew J. (2010). In remembrance of commensal intestinal microbes. Communicative & integrative biology, 3(6), pp. 569-571. Austin, Tex.: Landes Bioscience 10.4161/cib.3.6.13011
