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Braun, Julia; Held, Leonhard; Ledergerber, Bruno; Egger, M; Furrer, H; Keiser, O; Rauch, Andri; Schöni-Affolter, F; Swiss HIV Cohort Study, (2014). Accounting for baseline differences and measurement error in the analysis of change over time. Statistics in medicine, 33(1), pp. 2-16. Wiley-Blackwell 10.1002/sim.5910
Glass, Tracy R; Rotger, Margalida; Telenti, Amalio; Decosterd, Laurent; Csajka, Chantal; Bucher, Heiner C; Günthard, Huldrych F; Rickenbach, Martin; Nicca, Dunja; Hirschel, Bernard; Bernasconi, Enos; Wandeler, Gilles; Battegay, Manuel; Marzolini, Catia; Swiss HIV Cohort Study, (2012). Determinants of sustained viral suppression in HIV-infected patients with self-reported poor adherence to antiretroviral therapy. PLoS ONE, 7(1), e29186. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0029186
Clifford, G M; Lise, M; Franceschi, S; Egger, M; Bouchardy, C; Korol, D; Levi, F; Ess, S; Jundt, G; Wandeler, G; Fehr, J; Schmid, P; Battegay, M; Bernasconi, E; Cavassini, M; Calmy, A; Keiser, O; Schöni-Affolter, F; Swiss HIV Cohort Study, (2012). Lung cancer in the Swiss HIV Cohort Study: role of smoking, immunodeficiency and pulmonary infection. British journal of cancer, 106(3), pp. 447-452. Basingstoke: Nature Publishing Group 10.1038/bjc.2011.558
Staehelin, Cornelia; Keiser, Olivia; Calmy, Alexandra; Weber, Rainer; Elzi, Luigia; Cavassini, Matthias; Schmid, Patrick; Bernasconi, Enos; Furrer, Hansjakob; Swiss HIV Cohort Study, (2012). Longer term clinical and virological outcome of sub-Saharan African participants on antiretroviral treatment in the Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 59(1), pp. 79-85. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318236be70
Zuercher, Emilie; Butticaz, Christophe; Wyniger, Josiane; Martinez, Raquel; Battegay, Manuel; Boffi El Amari, Emmanuelle; Dang, Thanh; Egger, Jean-François; Fehr, Jan; Mueller-Garamvögyi, Esther; Parini, Andrea; Schaefer, Stephan C; Schoeni-Affolter, Franziska; Thurnheer, Christine; Tinguely, Marianne; Telenti, Amalio; Rothenberger, Sylvia; Swiss HIV Cohort Study, (2012). Genetic diversity of EBV-encoded LMP1 in the Swiss HIV Cohort Study and implication for NF-Κb activation. PLoS ONE, 7(2), e32168. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0032168
Egli, Adrian; Schäfer, Juliane; Osthoff, Michael; Thiel, Steffen; Mikkelsen, Christina; Rauch, Andri; Hirsch, Hans H; Bucher, Heiner C; Young, James; Jensenius, Jens C; Battegay, Manuel; Trendelenburg, Marten; Swiss HIV Cohort Study, (2012). Low levels of mannan-binding lectin or ficolins are not associated with an increased risk of cytomegalovirus disease in HIV-infected patients. PLoS ONE, 8(1), e51983. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0051983
Gasser, O; Brander, C; Wolbers, M; Brown, N V; Rauch, A; Günthard, H F; Battegay, M; Hess, C; Swiss HIV Cohort Study, (2012). Expansion of interferon-γ-secreting HIV-specific T cells during successful antiretroviral therapy. HIV medicine, 14(4), pp. 241-6. Oxford: Blackwell Science 10.1111/j.1468-1293.2012.01040.x
Pillai, Satish K; Abdel-Mohsen, Mohamed; Guatelli, John; Skasko, Mark; Monto, Alexander; Fujimoto, Katsuya; Yukl, Steven; Greene, Warner C; Kovari, Helen; Rauch, Andri; Fellay, Jacques; Battegay, Manuel; Hirschel, Bernard; Witteck, Andrea; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Wong, Joseph K; Swiss HIV Cohort Study, (2012). Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 109(8), pp. 3035-40. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.1111573109
Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Ledergerber, Bruno; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2012). Choice of Initial Combination Antiretroviral Therapy in Individuals With HIV Infection: Determinants and Outcomes. Archives of internal medicine, 172(17), pp. 1313-21. Chicago, Ill.: American Medical Association 10.1001/archinternmed.2012.3216
Scherrer, Alexandra U.; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Cellerai, Cristina; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L.; Bernasconi, Enos; Günthard, Huldrych F.; Swiss HIV Cohort Study, (2012). Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients. PLoS ONE, 7(6), e37983. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0037983
Young, Jim; Schäfer, Juliane; Fux, Christoph A; Furrer, Hansjakob; Bernasconi, Enos; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Weber, Rainer; Battegay, Manuel; Bucher, Heiner C; Swiss HIV Cohort Study, (2012). Renal function in patients with HIV starting therapy with tenofovir and either efavirenz, lopinavir or atazanavir. AIDS, 26(5), pp. 567-75. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32834f337c
Schüpbach, Jörg; Bisset, Leslie R.; Gebhardt, Martin D.; Regenass, Stephan; Bürgisser, Philippe; Gorgievski, Meri; Klimkait, Thomas; Andreutti, Corinne; Martinetti, Gladys; Niederhauser, Christoph; Yerly, Sabine; Pfister, Stefan; Schultze, Detlev; Brandenberger, Marcel; Schöni-Affolter, Franziska; Scherrer, Alexandra U.; Günthard, Huldrych F.; Swiss HIV Cohort Study, (2012). Diagnostic performance of line-immunoassay based algorithms for incident HIV-1 infection. BMC infectious diseases, 12, p. 88. London: BioMed Central 10.1186/1471-2334-12-88
Lubomirov, Rubin; Colombo, Sara; di Iulio, Julia; Ledergerber, Bruno; Martinez, Raquel; Cavassini, Matthias; Hirschel, Bernard; Bernasconi, Enos; Elzi, Luigia; Vernazza, Pietro; Furrer, Hansjakob; Günthard, Huldrych F; Telenti, Amalio; Swiss HIV Cohort Study, (2011). Association of pharmacogenetic markers with premature discontinuation of first-line anti-HIV therapy: an observational cohort study. Journal of infectious diseases, 203(2), pp. 246-57. Cary, N.C.: Oxford University Press 10.1093/infdis/jiq043
Young, J; Scherrer, A U; Günthard, Hf; Opravil, M; Yerly, S; Böni, J; Rickenbach, M; Fux, Ca; Cavassini, M; Bernasconi, E; Vernazza, P; Hirschel, B; Battegay, M; Bucher, Hc; Swiss HIV Cohort Study, (2011). Efficacy, tolerability and risk factors for virological failure of darunavir-based therapy for treatment-experienced HIV-infected patients: the Swiss HIV Cohort Study. HIV medicine, 12(5), pp. 299-307. Oxford: Blackwell Science 10.1111/j.1468-1293.2010.00885.x
Schüpbach, Jörg; Bisset, Leslie R; Regenass, Stephan; Bürgisser, Philippe; Gorgievski, Meri; Steffen, Ingrid; Andreutti, Corinne; Martinetti, Gladys; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Gebhardt, Martin; Schöni-Affolter, Franziska; Rickenbach, Martin; Keiser, O; Swiss HIV Cohort Study, (2011). High specificity of line-immunoassay based algorithms for recent HIV-1 infection independent of viral subtype and stage of disease. BMC infectious diseases, 11, p. 254. London: BioMed Central 10.1186/1471-2334-11-254
Haas, Anna; Zimmermann, Kathrin; Graw, Frederik; Slack, Emma; Rusert, Peter; Ledergerber, Bruno; Bossart, Walter; Weber, Rainer; Thurnheer, Maria C; Battegay, Manuel; Hirschel, Bernard; Vernazza, Pietro; Patuto, Nicola; Macpherson, Andrew J; Günthard, Huldrych F; Oxenius, Annette; Swiss HIV Cohort Study, (2011). Systemic antibody responses to gut commensal bacteria during chronic HIV-1 infection. Gut, 60(11), pp. 1506-19. London: BMJ Publishing Group 10.1136/gut.2010.224774
von Wyl, Viktor; Kouyos, Roger D; Yerly, Sabine; Böni, Jürg; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Staehelin, Cornelia; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. Journal of infectious diseases, 204(7), pp. 1095-103. Cary, N.C.: Oxford University Press 10.1093/infdis/jir491
di Iulio, Julia; Ciuffi, Angela; Fitzmaurice, Karen; Kelleher, Dermot; Rotger, Margalida; Fellay, Jacques; Martinez, Raquel; Pulit, Sara; Furrer, Hansjakob; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard; Barnes, Eleanor; Klenerman, Paul; Telenti, Amalio; Rauch, Andri; Swiss HIV Cohort Study, (2011). Estimating the net contribution of interleukin-28B variation to spontaneous hepatitis C virus clearance. Hepatology, 53(5), pp. 1446-54. Hoboken, N.J.: Wiley Interscience 10.1002/hep.24263
El Amari, E Boffi; Combescure, C; Yerly, S; Calmy, A; Kaiser, L; Hasse, B; Furrer, H; Cavassini, M; Vernazza, P; Hirsch, Hh; Bernasconi, E; Hirschel, B; Swiss HIV Cohort Study, (2011). Clinical relevance of cytomegalovirus viraemia(*,†). HIV medicine, 12(7), pp. 394-402. Oxford: Blackwell Science 10.1111/j.1468-1293.2010.00900.x
Ortiz, Millán; Poloni, Estella S; Furrer, Hansjakob; Kovari, Helen; Martinez, Raquel; Arnedo, Mireia; Elzi, Luigia; Bernasconi, Enos; Vernazza, Pietro; Hirschel, Bernard; Cavassini, Matthias; Ledergerber, Bruno; Günthard, Huldrych F; Telenti, Amalio; Tarr, Philip E; Swiss HIV Cohort Study, (2011). No longitudinal mitochondrial DNA sequence changes in HIV-infected individuals with and without lipoatrophy. Journal of infectious diseases, 203(5), pp. 620-4. Cary, N.C.: Oxford University Press 10.1093/infdis/jiq106
Kaufmann, Gilbert R; Elzi, Luigia; Weber, Rainer; Furrer, Hansjakob; Giulieri, Stefano; Vernazza, Pietro; Bernasconi, Enos; Hirschel, Bernard; Battegay, Manuel; Swiss HIV Cohort Study, (2011). Interruptions of cART limits CD4 T-cell recovery and increases the risk for opportunistic complications and death. AIDS, 25(4), pp. 441-51. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e3283430013
Gianella, Sara; von Wyl, Viktor; Fischer, Marek; Niederoest, Barbara; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Rauch, Andri; Hirschel, Bernard; Vernazza, Pietro; Weber, Rainer; Joos, Beda; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). Effect of early antiretroviral therapy during primary HIV-1 infection on cell-associated HIV-1 DNA and plasma HIV-1 RNA. Antiviral therapy, 16(4), pp. 535-45. London: International Medical Press 10.3851/IMP1776
Nguyen, Alain; Calmy, Alexandra; Delhumeau, Cécile; Mercier, Isabelle K; Cavassini, Matthias; Fayet-Mello, Aurélie; Elzi, Luigia; Genné, Daniel; Rauch, Andri; Bernasconi, Enos; Hirschel, Bernard; Swiss HIV Cohort Study, (2011). A randomized crossover study to compare efavirenz and etravirine treatment. AIDS, 25(1), pp. 57-63. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833f9f63
Fehr, Jan; Glass, Tracy R; Louvel, Séverine; Hamy, François; Hirsch, Hans H; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Bürgisser, Philippe; Cavassini, Matthias; Fux, Christoph A; Hirschel, Bernard; Vernazza, Pietro; Martinetti, Gladys; Bernasconi, Enos; Günthard, Huldrych F; Battegay, Manuel; Bucher, Heiner C; Klimkait, Thomas and Swiss HIV Cohort Study, (2011). Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals--the Swiss HIV Cohort Study. Journal of translational medicine, 9, p. 14. London: BioMed Central 10.1186/1479-5876-9-14
Alizon, Samuel; von Wyl, Viktor; Stadler, Tanja; Kouyos, Roger D; Yerly, Sabine; Hirschel, Bernard; Böni, Jürg; Shah, Cyril; Klimkait, Thomas; Furrer, Hansjakob; Rauch, Andri; Vernazza, Pietro L; Bernasconi, Enos; Battegay, Manuel; Bürgisser, Philippe; Telenti, Amalio; Günthard, Huldrych F; Bonhoeffer, Sebastian; Swiss HIV Cohort Study, (2010). Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS pathogens, 6(9), e1001123. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1001123
Marzolini, Catia; Elzi, Luigia; Gibbons, Sara; Weber, Rainer; Fux, Christoph; Furrer, Hansjakob; Chave, Jean-Philippe; Cavassini, Matthias; Bernasconi, Enos; Calmy, Alexandra; Vernazza, Pietro; Khoo, Saye; Ledergerber, Bruno; Back, David; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Prevalence of comedications and effect of potential drug-drug interactions in the Swiss HIV Cohort Study. Antiviral therapy, 15(3), pp. 413-23. London: International Medical Press 10.3851/IMP1540
Lubomirov, Rubin; di Iulio, Julia; Fayet, Aurélie; Colombo, Sara; Martinez, Raquel; Marzolini, Catia; Furrer, Hansjakob; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Ledergerber, Bruno; Rentsch, Katharina; Descombes, Patrick; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal; Telenti, Amalio; Swiss HIV Cohort Study, (2010). ADME pharmacogenetics: investigation of the pharmacokinetics of the antiretroviral agent lopinavir coformulated with ritonavir. Pharmacogenetics and genomics, 20(4), pp. 217-30. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e328336eee4
Elzi, Luigia; Marzolini, Catia; Furrer, Hansjakob; Ledergerber, Bruno; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Treatment modification in human immunodeficiency virus-infected individuals starting combination antiretroviral therapy between 2005 and 2008. Archives of internal medicine, 170(1), pp. 57-65. Chicago, Ill.: American Medical Association 10.1001/archinternmed.2009.432
Rauch, Andri; Kutalik, Zoltán; Descombes, Patrick; Cai, Tao; Di Iulio, Julia; Mueller, Tobias; Bochud, Murielle; Battegay, Manuel; Bernasconi, Enos; Borovicka, Jan; Colombo, Sara; Cerny, Andreas; Dufour, Jean-François; Furrer, Hansjakob; Günthard, Huldrych F; Heim, Markus; Hirschel, Bernard; Malinverni, Raffaele; Moradpour, Darius; Müllhaupt, Beat; ... (2010). Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study. Gastroenterology, 138(4), 1338-45, 1345.e1-7. Philadelphia, Pa.: Elsevier 10.1053/j.gastro.2009.12.056
Glass, Tracy R; Battegay, Manuel; Cavassini, Matthias; De Geest, Sabina; Furrer, Hansjakob; Vernazza, Pietro L; Hirschel, Bernard; Bernasconi, Enos; Rickenbach, Martin; Günthard, Huldrych F; Bucher, Heiner C; Swiss HIV Cohort Study, (2010). Longitudinal analysis of patterns and predictors of changes in self-reported adherence to antiretroviral therapy: Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 54(2), pp. 197-203. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e3181ca48bf
Scherrer, Alexandra U; von Wyl, Viktor; Fux, Christof A; Opravil, Milos; Bucher, Heiner C; Fayet, Aurélie; Decosterd, Laurent A; Hirschel, Bernhard; Khanlari, Bettina; Yerly, Sabine; Klimkait, Thomas; Furrer, Hansjakob; Ledergerber, Bruno; Günthard, Huldrych F; Swiss HIV Cohort Study, (2010). Implementation of raltegravir in routine clinical practice: selection criteria for choosing this drug, virologic response rates, and characteristics of failures. Journal of acquired immune deficiency syndromes JAIDS, 53(4), pp. 464-71. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e3181bca4ec
Osih, Regina B; Taffé, Patrick; Rickenbach, Martin; Gayet-Ageron, Angèle; Elzi, Luigia; Fux, Christoph; Opravil, Milos; Bernasconi, Enos; Schmid, Patrick; Günthard, Huldrych F; Cavassini, Matthias; Swiss HIV Cohort Study, (2010). Outcomes of patients on dual-boosted PI regimens: experience of the Swiss HIV cohort study. AIDS research and human retroviruses, 26(11), pp. 1239-46. New York, N.Y.: Mary Ann Liebert 10.1089/aid.2010.0070
Mueller, Nicolas J; Fux, Christoph A; Ledergerber, Bruno; Elzi, Luigia; Schmid, Patrick; Dang, Thanh; Magenta, Lorenzo; Calmy, Alexandra; Vergopoulos, Athanasios; Bischoff-Ferrari, Heike A; Swiss HIV Cohort Study, (2010). High prevalence of severe vitamin D deficiency in combined antiretroviral therapy-naive and successfully treated Swiss HIV patients. AIDS, 24(8), pp. 1127-34. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e328337b161
Bucher, Heiner C; Rickenbach, Martin; Young, Jim; Glass, Tracy R; Vallet, Yannick; Bernasconi, Enos; Cavassini, Matthias; Fux, Christoph; Schiffer, Véronique; Vernazza, Pietro; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Randomized trial of a computerized coronary heart disease risk assessment tool in HIV-infected patients receiving combination antiretroviral therapy. Antiviral therapy, 15(1), pp. 31-40. London: International Medical Press 10.3851/IMP1475
Opravil, Milos; Klimkait, Thomas; Louvel, Severine; Wolf, Eva; Battegay, Manuel; Fux, Christoph A; Bernasconi, Enos; Vogel, Martin; Speck, Roberto; Weber, Rainer; Swiss HIV Cohort Study, (2010). Prior therapy influences the efficacy of lamivudine monotherapy in patients with lamivudine-resistant HIV-1 infection. Journal of acquired immune deficiency syndromes JAIDS, 54(1), pp. 51-8. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e3181bef889
