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Gül, Ersin; Huuskonen, Jemina; Abi Younes, Andrew; Maurer, Luca; Enz, Ursina; Zimmermann, Jakob; Sellin, Mikael E; Bakkeren, Erik; Hardt, Wolf-Dietrich (2024). Salmonella T3SS-2 virulence enhances gut-luminal colonization by enabling chemotaxis-dependent exploitation of intestinal inflammation. Cell reports, 43(3), p. 113925. Cell Press 10.1016/j.celrep.2024.113925
Hassan, Mohsin; Juanola, Oriol; Huber, Stefania; Kellmann, Philipp; Zimmermann, Jakob; Lazzarini, Edoardo; Ganal-Vonarburg, Stephanie C; Gomez de Agüero, Mercedes; Moghadamrad, Sheida (2023). Absence of gut microbiota impairs depletion of Paneth cells but not goblet cells in germ-free Atoh1lox/lox VilCreERT2 mice. American journal of physiology. Gastrointestinal and liver physiology, 324(6), G426-G437. American Physiological Society 10.1152/ajpgi.00123.2022
Schmidt, Florian; Zimmermann, Jakob; Tanna, Tanmay; Farouni, Rick; Conway, Tyrrell; Macpherson, Andrew J; Platt, Randall J (2022). Noninvasive assessment of gut function using transcriptional recording sentinel cells. Science, 376(6594), eabm6038. American Association for the Advancement of Science 10.1126/science.abm6038
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Murugan, Shaira; Hamley, Jonathan I. D.; Rollenske, Tim; Ganal-Vonarburg, Stephanie C.; Büchi, Isabel; Keogh, Adrian; Li, Hai; Salm, Lilian; Spari, Daniel; Yilmaz, Bahtiyar; Zimmermann, Jakob; Gerfin, Michael; Roldan, Edgar; Beldi, Guido (2021). Regular testing of asymptomatic healthcare workers identifies cost-efficient SARS-CoV-2 preventive measures. PLoS ONE, 16(11), e0258700. Public Library of Science 10.1371/journal.pone.0258700
Stehle, Christina; Rückert, Timo; Fiancette, Rémi; Gajdasik, Dominika W; Willis, Claire; Ulbricht, Carolin; Durek, Pawel; Mashreghi, Mir-Farzin; Finke, Daniela; Hauser, Anja Erika; Withers, David R; Chang, Hyun-Dong; Zimmermann, Jakob; Romagnani, Chiara (2021). T-bet and RORα control lymph node formation by regulating embryonic innate lymphoid cell differentiation. Nature immunology, 22(10), pp. 1231-1244. Nature Publishing Group 10.1038/s41590-021-01029-6
Maschmeyer, Patrick; Zimmermann, Jakob; Kühl, Anja Andrea (2021). Murine T-Cell Transfer Colitis as a Model for Inflammatory Bowel Disease. Methods in molecular biology, 2285, pp. 349-373. Springer 10.1007/978-1-0716-1311-5_26
Zimmermann, Jakob (2021). Evaluation of Cytokine Production at the Single Cell Level by Flow Cytometry Upon Polyclonal Stimulation. Methods in molecular biology, 2285, pp. 111-119. Springer 10.1007/978-1-0716-1311-5_9
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Zimmermann, Jakob (2020). Trash Your Agar Plates! Blood Stream Bacteria Are Now Quantified by in vivo Flow Cytometry. Cytometry. Part A, 97(9), pp. 869-871. Wiley 10.1002/cyto.a.24010
Feuerstein, Reinhild; Forde, Aaron James; Lohrmann, Florens; Kolter, Julia; Ramirez, Neftali Jose; Zimmermann, Jakob; Gomez de Agüero, Mercedes; Henneke, Philipp (2020). Resident macrophages acquire innate immune memory in staphylococcal skin infection. eLife, 9 eLife Sciences Publications 10.7554/eLife.55602
Zimmermann, Jakob; Macpherson, Andrew J. (2020). Breast Milk Modulates Transgenerational Immune Inheritance. Cell, 181(6), pp. 1202-1204. Cell Press 10.1016/j.cell.2020.05.030
Beller, Alexander; Kruglov, Andrey; Durek, Pawel; von Goetze, Victoria; Werner, Katharina; Heinz, Gitta Anne; Ninnemann, Justus; Lehmann, Katrin; Maier, René; Hoffmann, Ute; Riedel, René; Heiking, Kevin; Zimmermann, Jakob; Siegmund, Britta; Mashreghi, Mir‐Farzin; Radbruch, Andreas; Chang, Hyun‐Dong (2020). Specific microbiota enhances intestinal IgA levels by inducing TGF‐β in T follicular helper cells of Peyer's patches in mice. European journal of immunology, 50(6), pp. 783-794. Wiley-VCH 10.1002/eji.201948474
Riedel, René; Addo, Richard; Ferreira-Gomes, Marta; Heinz, Gitta Anne; Heinrich, Frederik; Kummer, Jannis; Greiff, Victor; Schulz, Daniel; Klaeden, Cora; Cornelis, Rebecca; Menzel, Ulrike; Kröger, Stefan; Stervbo, Ulrik; Köhler, Ralf; Haftmann, Claudia; Kühnel, Silvia; Lehmann, Katrin; Maschmeyer, Patrick; McGrath, Mairi; Naundorf, Sandra; ... (2020). Discrete populations of isotype-switched memory B lymphocytes are maintained in murine spleen and bone marrow. Nature Communications, 11(1), p. 2570. Springer Nature 10.1038/s41467-020-16464-6
Cossarizza, Andrea; Chang, Hyun-Dong; Radbruch, Andreas; Acs, Andreas; Adam, Dieter; Adam-Klages, Sabine; Agace, William W; Aghaeepour, Nima; Akdis, Mübeccel; Allez, Matthieu; Almeida, Larissa Nogueira; Alvisi, Giorgia; Anderson, Graham; Andrä, Immanuel; Annunziato, Francesco; Anselmo, Achille; Bacher, Petra; Baldari, Cosima T; Bari, Sudipto; Barnaba, Vincenzo; ... (2019). Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). European journal of immunology, 49(10), pp. 1457-1973. Wiley-VCH 10.1002/eji.201970107
Iannone, Luigi Francesco; Preda, Alberto; Blottière, Hervé M; Clarke, Gerard; Albani, Diego; Belcastro, Vincenzo; Carotenuto, Marco; Cattaneo, Annamaria; Citraro, Rita; Ferraris, Cinzia; Ronchi, Francesca; Luongo, Gaia; Santocchi, Elisa; Guiducci, Letizia; Baldelli, Pietro; Iannetti, Paola; Pedersen, Sigrid; Petretto, Andrea; Provasi, Stefania; Selmer, Kaja; ... (2019). Microbiota-gut brain axis involvement in neuropsychiatric disorders. Expert review of neurotherapeutics, 19(10), pp. 1037-1050. Taylor & Francis 10.1080/14737175.2019.1638763
Czechowska, Kamila; Lannigan, Joanne; Wang, Lili; Arcidiacono, Judith; Ashhurst, Thomas M.; Barnard, Ruth M.; Bauer, Steven; Bispo, Cláudia; Bonilla, Diana L.; Brinkman, Ryan R.; Cabanski, Maciej; Chang, Hyun‐Dong; Chakrabarti, Lina; Chojnowski, Grace; Cotleur, Bunny; Degheidy, Heba; Dela Cruz, Gelo V.; Eck, Steven; Elliott, John; Errington, Rachel; ... (2019). Cyt‐Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops. Cytometry. Part A, 95(6), pp. 598-644. Wiley 10.1002/cyto.a.23777
Gronke, Konrad; Hernández, Pedro P.; Zimmermann, Jakob; Klose, Christoph S. N.; Kofoed-Branzk, Michael; Guendel, Fabian; Witkowski, Mario; Tizian, Caroline; Amann, Lukas; Schumacher, Fabian; Glatt, Hansruedi; Triantafyllopoulou, Antigoni; Diefenbach, Andreas (2019). Interleukin-22 protects intestinal stem cells against genotoxic stress. Nature, 566(7743), pp. 249-253. Macmillan Journals Ltd. 10.1038/s41586-019-0899-7
Zimmermann, Jakob; Durek, Pawel; Kühl, Anja A; Schattenberg, Florian; Maschmeyer, Patrick; Siracusa, Francesco; Lehmann, Katrin; Westendorf, Kerstin; Weber, Melanie; Riedel, René; Müller, Susann; Radbruch, Andreas; Chang, Hyun-Dong (2018). The intestinal microbiota determines the colitis-inducing potential of T-bet-deficient Th cells in mice. European journal of immunology, 48(1), pp. 161-167. Wiley-VCH 10.1002/eji.201747100
Cossarizza, Andrea; Chang, Hyun-Dong; Radbruch, Andreas; Akdis, Mübeccel; Andrä, Immanuel; Annunziato, Francesco; Bacher, Petra; Barnaba, Vincenzo; Battistini, Luca; Bauer, Wolfgang M; Baumgart, Sabine; Becher, Burkhard; Beisker, Wolfgang; Berek, Claudia; Blanco, Alfonso; Borsellino, Giovanna; Boulais, Philip E; Brinkman, Ryan R; Büscher, Martin; Busch, Dirk H; ... (2017). Guidelines for the use of flow cytometry and cell sorting in immunological studies. European journal of immunology, 47(10), pp. 1584-1797. Wiley-VCH 10.1002/eji.201646632
