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Bustamante Eduardo, Mariana; Keller, Irene; Schuster, Nathalie; Aebi, Stefan; Jaggi, Rolf (2023). Molecular characterization of breast cancer cell pools with normal or reduced ability to respond to progesterone: a study based on RNA-seq. Journal, genetic engineering & biotechnology, 21(1), p. 81. Springer 10.1186/s43141-023-00541-6
Popovici, Vlad; Budinská, Eva; Čápková, Lenka; Schwarz, Daniel; Dušek, Ladislav; Feit, Josef; Jaggi, Rolf (2016). Joint analysis of histopathology image features and gene expression in breast cancer. BMC bioinformatics, 17(1), p. 209. BioMed Central 10.1186/s12859-016-1072-z
Huber, F; Montani, Matteo; Sulser, T; Jaggi, Rolf; Wild, P; Moch, H; Gevensleben, H; Schmid-Maurer, Christine; Wyder, Stefan; Kristiansen, G (2015). Comprehensive validation of published immunohistochemical prognostic biomarkers of prostate cancer-what has gone wrong? A blueprint for the way forward in biomarker studies. British journal of cancer, 112(1), pp. 140-148. Nature Publishing Group 10.1038/bjc.2014.588
Gautschi, O.; Mach, N.; Rothschild, S.; Li, Qiyu; Stahel, R. A.; Zippelius, A.; Cathomas, R.; Früh, M.; Betticher, D. C.; Peters, S.; Rauch, D.; Feilchenfeldt, J.; Bubendorf, L.; Savic, S.; Jaggi, Rolf; Oppliger Leibundgut, Elisabeth; Largiadèr, Carlo Rodolfo; Brutsche, M.; Pilop, C.; Stalder, L.; ... (2015). Bevacizumab, Pemetrexed, and Cisplatin, or Bevacizumab and Erlotinib for Patients With Advanced Non-Small-Cell Lung Cancer Stratified by Epidermal Growth Factor Receptor Mutation: Phase II Trial SAKK19/09. Clinical lung cancer, 16(5), pp. 358-365. Elsevier 10.1016/j.cllc.2015.02.007
Bustin, Stephen A.; Benes, Vladimir; Garson, Jeremy; Hellemans, Jan; Huggett, Jim; Kubista, Mikael; Mueller, Reinhold; Nolan, Tania; Pfaffl, Michael W.; Shipley, Gregory; Wittwer, Carl T.; Schjerling, Peter; Day, Philip J.; Abreu, Mónica; Aguado, Begoña; Beaulieu, Jean-François; Beckers, Anneleen; Bogaert, Sara; Browne, John A.; Carrasco-Ramiro, Fernando; ... (2013). The need for transparency and good practices in the qPCR literature. Nature methods, 10(11), pp. 1063-1067. Nature Publishing Group 10.1038/nmeth.2697
Spaniol, Violeta; Wyder, Stefan; Aebi, Christoph (2013). RNA-Seq-based analysis of the physiologic cold shock-induced changes in Moraxella catarrhalis gene expression. PLoS ONE, 8(7), e68298. Public Library of Science 10.1371/journal.pone.0068298
Rothschild, S I; Tschan, M P; Federzoni, E A; Jaggi, R; Fey, M F; Gugger, M; Gautschi, O (2012). MicroRNA-29b is involved in the Src-ID1 signaling pathway and is dysregulated in human lung adenocarcinoma. Oncogene, 31(38), pp. 4221-32. Basingstoke, UK: Nature Publishing Group 10.1038/onc.2011.578
Rothschild, Sacha I; Tschan, Mario P; Jaggi, Rolf; Fey, Martin F; Gugger, Mathias; Gautschi, Oliver (2012). MicroRNA-381 Represses ID1 and is Deregulated in Lung Adenocarcinoma. Journal of thoracic oncology, 7(7), pp. 1069-77. Hagerstown, Md.: Wolters Kluwer Health/Lippincott Williams & Wilkins 10.1097/JTO.0b013e31824fe976
Cathomas, Richard; Rothermundt, Christian; Klingbiel, Dirk; Bubendorf, Lukas; Jaggi, Rolf; Betticher, Daniel C; Brauchli, Peter; Cotting, Denise; Droege, Cornelia; Winterhalder, Ralph; Siciliano, Daniele; Berthold, Dominik R; Pless, Miklos; Schiess, Ralph; von Moos, Roger; Gillessen, Silke (2012). Efficacy of cetuximab in metastatic castration-resistant prostate cancer might depend on EGFR and PTEN expression: results from a phase II trial (SAKK 08/07). Clinical cancer research, 18(21), pp. 6049-57. Philadelphia, Pa.: American Association for Cancer Research 10.1158/1078-0432.CCR-12-2219
Mortezavi, Ashkan; Hermanns, Thomas; Seifert, Hans-Helge; Baumgartner, Martin K; Provenzano, Maurizio; Sulser, Tullio; Burger, Maximilian; Montani, Matteo; Ikenberg, Kristian; Hofstädter, Ferdinand; Hartmann, Arndt; Jaggi, Rolf; Moch, Holger; Kristiansen, Glen; Wild, Peter J (2011). KPNA2 expression is an independent adverse predictor of biochemical recurrence after radical prostatectomy. Clinical cancer research, 17(5), pp. 1111-21. Philadelphia, Pa.: American Association for Cancer Research 10.1158/1078-0432.CCR-10-0081
Moor, A E; Guevara, C; Altermatt, H J; Warth, R; Jaggi, R; Aebi, S (2011). PRO_10--a new tissue-based prognostic multigene marker in patients with early estrogen receptor-positive breast cancer. Pathobiology, 78(3), pp. 140-8. Basel: Karger 10.1159/000323809
Wilkens, Ludwig; Jaggi, Rolf; Hammer, Caroline; Inderbitzin, Daniel; Giger, Olivier; von Neuhoff, Nils (2011). The homeobox gene HLXB9 is upregulated in a morphological subset of poorly differentiated hepatocellular carcinoma. Virchows Archiv, 458(6), pp. 697-708. Berlin: Springer-Verlag 10.1007/s00428-011-1070-5
Amstutz, Ursula; Andrey-Zürcher, Gisela; Suciu, Dominic; Jaggi, Rolf; Häberle, Johannes; Largiadèr, Carlo R (2011). Sequence capture and next-generation resequencing of multiple tagged nucleic acid samples for mutation screening of urea cycle disorders. Clinical chemistry, 57(1), pp. 102-11. Washington, D.C.: American Association for Clinical Chemistry 10.1373/clinchem.2010.150706
Cleynen, Isabelle; Jüni, Peter; Bekkering, Geertruida E; Nüesch, Eveline; Mendes, Camila T; Schmied, Stefanie; Wyder, Stefan; Kellen, Eliane; Villiger, Peter M; Rutgeerts, Paul; Vermeire, Séverine; Lottaz, Daniel (2011). Genetic evidence supporting the association of protease and protease inhibitor genes with inflammatory bowel disease: a systematic review. PLoS ONE, 6(9), e24106. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0024106
Gottstein, Bruno; Wittwer, Matthias; Schild, Marc; Merli, Michael; Leib, Stephen L.; Müller, Norbert; Müller, Joachim; Jaggi, Rolf (2010). Hepatic gene expression profile in mice perorally infected with Echinococcus multilocularis eggs. PLoS ONE, 5(4), e9779. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0009779
Antonov, Janine; Popovici, Vlad; Delorenzi, Mauro; Wirapati, Pratyaksha; Baltzer, Anna; Oberli, Andrea; Thürlimann, Beat; Giobbie-Hurder, Anita; Viale, Giuseppe; Altermatt, Hans Jörg; Aebi, Stefan; Jaggi, Rolf (2010). Molecular risk assessment of BIG 1-98 participants by expression profiling using RNA from archival tissue. BMC cancer, 10, p. 37. London: BioMed Central 10.1186/1471-2407-10-37
Meier, Pascal; Antonov, Janine; Zbinden, Rainer; Kuhn, Aléxandre; Zbinden, Stephan; Gloekler, Steffen; Delorenzi, Mauro; Jaggi, Rolf; Seiler, Christian (2009). Non-invasive gene-expression-based detection of well-developed collateral function in individuals with and without coronary artery disease. Heart, 95(11), pp. 900-8. London: BMJ Publishing Group 10.1136/hrt.2008.145383
Popovici, Vlad; Goldstein, Darlene R; Antonov, Janine; Jaggi, Rolf; Delorenzi, Mauro; Wirapati, Pratyaksha (2009). Selecting control genes for RT-QPCR using public microarray data. BMC bioinformatics, 10, p. 42. London: BioMed Central 10.1186/1471-2105-10-42
Schobesberger, Martina; Baltzer, Anna; Oberli, Andrea; Kappeler, Andreas; Gugger, Mathias; Burger, Hana; Jaggi, Rolf (2008). Gene expression variation between distinct areas of breast cancer measured from paraffin-embedded tissue cores. BMC cancer, 8, p. 343. London: BioMed Central 10.1186/1471-2407-8-343
Oberli, Andrea; Popovici, Vlad; Delorenzi, Mauro; Baltzer, Anna; Antonov, Janine; Matthey, Sybille; Aebi, Stefan; Altermatt, Hans Jörg; Jaggi, Rolf (2008). Expression profiling with RNA from formalin-fixed, paraffin-embeeded material. BMC Genomics, 1(1), p. 9. London: BioMed Central 10.1186/1755-8794-1-9
Leupin, Nicolas; Kuhn, Alexandre; Hügli, Barbara; Grob, Tobias J; Jaggi, Rolf; Tobler, Andreas; Delorenzi, Mauro; Fey, Martin F (2006). Gene expression profiling reveals consistent differences between clinical samples of human leukaemias and their model cell lines. British journal of haematology, 135(4), pp. 520-3. Oxford: Wiley-Blackwell 10.1111/j.1365-2141.2006.06342.x
Antonov, Janine; Goldstein, Darlene R; Oberli, Andrea; Baltzer, Anna; Pirotta, Marco; Fleischmann, Achim; Altermatt, Hans J; Jaggi, Rolf (2005). Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization. Laboratory investigation, 85(8), pp. 1040-50. New York, N.Y.: Nature Publishing Group 10.1038/labinvest.3700303
Baltzer, A; Svanborg, C; Jaggi, R (2004). Apoptotic cell death in the lactating mammary gland is enhanced by a folding variant of alpha-lactalbumin. Cellular and molecular life sciences, 61(10), pp. 1221-8. Basel: Birkhäuser-Verlag 10.1007/s00018-004-4046-7
