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Duque, S.; Porensky, P.; William, D.A.; Odermatt, Philipp; Nlend, Rachel; Bevan, A.K.; Foust, K.; Braun, L.; Schmelzer, L.; Schümperli, Daniel; Kaspar, B.K.; Burghes, A.H.M. (2013). O.8 Intrathecal delivery of AAV9 vectors to model and rescue a large animal model of SMA. Neuromuscular disorders, 23(9-10), p. 797. Elsevier 10.1016/j.nmd.2013.06.558
Schümperli, Daniel (2012). Beeinflusst die moderne Bio- und Gentechnologie die Evolution? In: Dubach, Martina (ed.) Evolution wohin? Die Folgen der darwinschen Theorie (pp. 201-213). Zürich: vdf Hochschulverlag
Schümperli, Daniel (2002). Megatrends in medicine. In: Leuthold, M.; Leuenberger, H.; Weibel, E.R. (eds.) Megatrends – rise and fall of megatrends in science. Basel: Schwabe
Schümperli, Daniel; Albrecht, U; Koning, T W; Melin, L; Soldati, D; Stauber, C; Lührmann, R (1990). Biochemical studies of U7 snRNPs and of histone RNA 3' processing. Molecular Biology Reports, 14(2-3), pp. 205-206. Kluwer Academic Publishers
Barman-Aksözen, Jasmin; Ćwiek, Paulina; Bansode, Vijay B.; Koentgen, Frank; Trüb, Judith; Pelczar, Pawel; Cinelli, Paolo; Schneider-Yin, Xiaoye; Schümperli, Daniel; Minder, Elisabeth I. (2017). Modeling the ferrochelatase c.315-48C modifier mutation for erythropoietic protoporphyria (EPP) in mice. Disease models & mechanisms, 10(3), pp. 225-233. Company of Biologists Ltd. 10.1242/dmm.027755
Li, Meiling; Lightfoot, Helen Louise; Halloy, Francois; Malinowska, Anna; Berk, Christian; Behera, Alok; Schümperli, Daniel; Hall, Jonathan (2017). Synthesis and cellular activity of stereochemically-pure 2’-O-(2-methoxyethyl)-phosphorothioate oligonucleotides. Chemical communications, 53(3), pp. 541-544. Royal Society of Chemistry 10.1039/C6CC08473G
Odermatt, Philipp; Trüb, Judith; Furrer, Lavinia; Fricker, Roger; Marti, Andreas; Schümperli, Daniel (2016). Somatic therapy of a mouse SMA model with a U7 snRNA gene correcting SMN2 splicing. Molecular therapy, 24(10), pp. 1797-1805. Nature Publishing Group 10.1038/mt.2016.152
Schümperli, Daniel (2016). Rudolf Weber (1922-2015): a driving force in the transition of developmental biology into a molecular and cellular science. Development genes and evolution, 226(2), pp. 65-67. Springer 10.1007/s00427-016-0532-9
Romeo, Valentina; Schümperli, Daniel (2016). Cycling in the nucleus: regulation of RNA 3' processing and nuclear organization of replication-dependent histone genes. Current opinion in cell biology, 40, pp. 23-31. Elsevier 10.1016/j.ceb.2016.01.015
Neve, Anuja Vilas; Trüb, Judith; Saxena, Smita; Schümperli, Daniel (2016). Central and peripheral defects in motor units of the diaphragm of spinal muscular atrophy mice. Molecular and cellular neuroscience, 70, pp. 30-41. Elsevier 10.1016/j.mcn.2015.11.007
Duque, Sandra I; Arnold, W David; Odermatt, Philipp; Li, Xiaohui; Porensky, Paul N; Schmelzer, Leah; Meyer, Kathrin; Kolb, Stephen J; Schümperli, Daniel; Kaspar, Brian K; Burghes, Arthur H M (2015). A large animal model of spinal muscular atrophy and correction of phenotype. Annals of neurology, 77(3), pp. 399-414. Wiley-Blackwell 10.1002/ana.24332
Raczynska, Katarzyna Dorota; Ruepp, Marc-David; Brzek, Aleksandra; Reber, Stefan; Romeo, Valentina; Rindlisbacher, Barbara; Heller, Manfred; Szweykowska-Kulinska, Zofia; Jarmolowski, Artur; Schümperli, Daniel (2015). FUS/TLS contributes to replication-dependent histone gene expression by interaction with U7 snRNPs and histone-specific transcription factors. Nucleic acids research, 43(20), pp. 9711-9728. Oxford University Press 10.1093/nar/gkv794
Romeo, Valentina; Griesbach, Esther; Schümperli, Daniel (2014). CstF64: cell cycle regulation and functional role in 3' end processing of replication-dependent histone mRNAs. Molecular and cellular biology, 34(23), pp. 4272-4284. American Society for Microbiology 10.1128/MCB.00791-14
Voigt, Tilman; Neve, Anuja Vilas; Schümperli, Daniel (2014). The craniosacral progression of muscle development influences the emergence of neuromuscular junction alterations in a severe murine model for spinal muscular atrophy. Neuropathology and Applied Neurobiology, 40(4), pp. 416-434. Wiley 10.1111/nan.12064
Huo, Qing; Kayikci, Melis; Odermatt, Philipp; Meyer, Kathrin; Michels, Olivia; Saxena, Smita; Ule, Jernej; Schümperli, Daniel (2014). Splicing changes in SMA mouse motoneurons and SMN-depleted neuroblastoma cells: evidence for involvement of splicing regulatory proteins. RNA biology, 11(11), pp. 1430-1446. Landes Bioscience 10.1080/15476286.2014.996494
Burghes, A.; McGovern, V.; Porensky, P.; Duque, S.; Bevan, A.; Foust, K.; Odermatt, P.; Nlend, R.; Massoni-Laporte, A.; Mitrpant, C.; Wilton, S.; Schümperli, Daniel; Kaspar, B. (October 2012). Spinal muscular atrophy SMA: SMNs spatial requirement and therapies. Neuromuscular disorders, 22(9-10), pp. 907-908. Amsterdam: Elsevier 10.1016/j.nmd.2012.06.342
Nlend Nlend, R.; Schümperli, Daniel (2012). Antisense Genes to Induce Exon Inclusion. In: Aartsma-Rus, Annemieke (ed.) Exon Skipping : Methods and Protocols. Methods in Molecular Biology: Vol. 867 (pp. 325-347). Heidelberg: Springer 10.1007/978-1-61779-767-5_21
Ruepp, Marc-David; Schweingruber, Christoph; Kleinschmidt, Nicole; Schümperli, Daniel (2011). Interactions of CstF-64, CstF-77, and symplekin: Implications on localisation and function. Molecular biology of the cell, 22(1), pp. 91-104. Bethesda, Md.: American Society for Cell Biology 10.1091/mbc.E10-06-0543
Ruepp, Marc-David; Schümperli, Daniel; Barabino, Silvia M.L. (2011). mRNA 3' end processing and more - multiple functions of mammalian cleavage factor I-68. RNA - a publication of the RNA Society, 2(1), pp. 79-91. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1002/wrna.35
Matulis, Gediminas; Sanderson, Joseph P; Lissin, Nikolai M; Asparuhova, Maria B; Bommineni, Gopal R; Schümperli, Daniel; Schmidt, Richard R; Villiger, Peter M; Jakobsen, Bent K; Gadola, Stephan D (2010). Innate-like control of human iNKT cell autoreactivity via the hypervariable CDR3beta loop. PLoS biology, 8(6), e1000402. Lawrence, Kans.: Public Library of Science 10.1371/journal.pbio.1000402
Ittig, Damian; Luisier, Samuel; Weiler, Jan; Schümperli, Daniel; Leumann, Christian J. (2010). Improving gene silencing of siRNAs via tricyclo-DNA modification. Artificial DNA, PNA & XNA, 1(1), pp. 9-16. Austin, Tex.: Landes Bioscience 10.4161/adna.1.1.11385
Meyer, Kathrin; Marquis, Julien; Trüb, Judith; Nlend Nlend, Rachel; Verp, Sonia; Ruepp, Marc-David; Imboden, Hans; Barde, Isabelle; Trono, Didier; Schümperli, Daniel (2009). Rescue of a severe mouse model for spinal muscular atrophy by U7 snRNA-mediated splicing modulation. Human molecular genetics, 18(3), pp. 546-555. Oxford: Oxford University Press 10.1093/hmg/ddn382
Marquis, J.; Kampfer, S.S.; Angehrn, L.; Schümperli, Daniel (2009). Doxycycline-controlled splicing modulation by regulated antisense U7 snRNA expression cassettes. Gene therapy, 16(1), pp. 70-7. London: Nature Publishing Group 10.1038/gt.2008.138
Ruepp, Marc-David; Aringhieri, Chiara; Vivarelli, Silvia; Cardinale, Stefano; Paro, Simona; Schümperli, Daniel; Barabino, Silvia M.L. (2009). Mammalian pre-mRNA 3' end processing factor CF I m 68 functions in mRNA export. Molecular biology of the cell, 20(24), pp. 5211-23. Bethesda, Md.: American Society for Cell Biology 10.1091/mbc.E09-05-0389
Asparuhova, Maria B.; Barde, Isabelle; Trono, Didier; Schranz, Karin; Schümperli, Daniel (2008). Development and characterization of a triple combination gene therapy vector inhibiting HIV-1 multiplication. Journal of gene medicine, 10(10), pp. 1059-1070. Chichester: Wiley 10.1002/jgm.1238
Ittig, Damian; Schümperli, Daniel; Leumann, Christian J. (2008). Tc-DNA modified siRNA. Nucleic Acids Symposium Series, 52(1), pp. 501-502. Oxford University Press 10.1093/nass/nrn254
Asparuhova, Maria B.; Marti, Gabriela; Liu, Songkai; Serhan, Fatima; Trono, Didier; Schümperli, Daniel (2007). Inhibition of HIV-1 multiplication by a modified U7 snRNA inducing Tat and Rev exon skipping. Journal of gene medicine, 9(5), pp. 323-334. Chichester: Wiley 10.1002/jgm.1027
Azzouz, Teldja N.; Pillai, Ramesh S.; Däpp, Christoph; Chari, Ashwin; Meister, Gunter; Kambach, Christian; Fischer, Utz; Schümperli, Daniel (2005). Toward an assembly line for U7 snRNPs: interactions of U7-specific Lsm proteins with PRMT5 and SMN complexes. Journal of biological chemistry, 280(41), pp. 34435-34440. American Society for Biochemistry and Molecular Biology 10.1074/jbc.M505077200
Xu, Hongzhi; Pillai, Ramesh S.; Azzouz, Teldja N.; Shpargel, Karl B.; Kambach, Christian; Hebert, Michael D.; Schümperli, Daniel; Matera, A. Gregory (2005). The C-terminal domain of coilin interacts with Sm proteins and U snRNPs. Chromosoma, 114(3), pp. 155-166. Springer 10.1007/s00412-005-0003-y
Gorgoni, Barbara; Andrews, Stuart; Schaller, André; Schümperli, Daniel; Gray, Nicola K; Müller, Berndt (2005). The stem-loop binding protein stimulates histone translation at an early step in the initiation pathway. RNA - a publication of the RNA Society, 11(7), pp. 1030-1042. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.7281305
Azzouz, Teldja N.; Gruber, Andreas; Schümperli, Daniel (2005). U7 snRNP-specific Lsm11 protein: dual binding contacts with the 100 kDa zinc finger processing factor (ZFP100) and a ZFP100-independent function in histone RNA 3' end processing. Nucleic acids research, 33(7), pp. 2106-2117. Oxford University Press 10.1093/nar/gki516
Ittig, D.; Liu, Shi-Xia; Renneberg, Dorte; Schümperli, Daniel; Leumann, Christian (2004). Nuclear antisense effects in cyclophilin A pre-mRNA splicing by oligonucleotides: A comparison of tricyclo-DNA with LNA. Nucleic acids research, 32(1), pp. 346-353. Oxford University Press 10.1093/nar/gkh187
Liu, Songkai; Asparuhova, Maria; Brondani, Vincent; Ziekau, Ingrid; Klimkait, Thomas; Schümperli, Daniel (2004). Inhibition of HIV-1 multiplication by antisense U7 snRNAs and siRNAs targeting cyclophilin A. Nucleic acids research, 32(12), pp. 3752-3759. Oxford University Press 10.1093/nar/gkh715
Schümperli, Daniel; Pillai, R S (2004). The special Sm core structure of the U7 snRNP: far-reaching significance of a small nuclear ribonucleoprotein. Cellular and molecular life sciences, 61(19-20), pp. 2560-2570. Birkhäuser-Verlag; www.birkhauser.ch 10.1007/s00018-004-4190-0
Asparuhova, Maria B.; Kole, Ryszard; Schümperli, Daniel (2004). Antisense derivatives of U7 and other small nuclear RNAs as tools to modify pre-mRNA splicing patterns. Gene Therapy and Regulation, 2(4), pp. 321-349. VSP International Science Publishers 10.1163/1568558043967472
Azzouz, Teldja N; Schümperli, Daniel (2003). Evolutionary conservation of the U7 small nuclear ribonucleoprotein in Drosophila melanogaster. RNA - a publication of the RNA Society, 9(12), pp. 1532-1541. Cold Spring Harbor Laboratory Press 10.1261/rna.5143303
Pillai, Ramesh S; Grimmler, Matthias; Meister, Gunter; Will, Cindy L; Lührmann, Reinhard; Fischer, Utz; Schümperli, Daniel (2003). Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing. Genes & development, 17(18), pp. 2321-2333. Cold Spring Harbor Laboratory Press 10.1101/gad.274403
Brun, C; Suter, D; Pauli, C; Dunant, P; Lochmüller, H; Burgunder, J M; Schümperli, Daniel; Weis, J (2003). U7 snRNAs induce correction of mutated dystrophin pre-mRNA by exon skipping. Cellular and molecular life sciences, 60(3), pp. 557-566. Springer
Pettitt, Jonathan; Crombie, Catriona; Schümperli, Daniel; Müller, Berndt (2002). The Caenorhabditis elegans histone hairpin-binding protein is required for core histone gene expression and is essential for embryonic and postembryonic cell division. Journal of cell science, 115(Pt 4), pp. 857-866. Company of Biologists Limited
Zanier, Katia; Luyten, Ingrid; Crombie, Catriona; Muller, Berndt; Schümperli, Daniel; Linge, Jens P; Nilges, Michael; Sattler, Michael (2002). Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression. RNA - a publication of the RNA Society, 8(1), pp. 29-46. Cold Spring Harbor Laboratory Press
Renneberg, Dorte; Bouliong, Emilie; Reber, Ulrich; Schümperli, Daniel; Leumann, Christian J. (2002). Antisense properties of tricyclo-DNA. Nucleic acids research, 30(13), pp. 2751-2757. Oxford University Press 10.1093/nar/gkf412
Pillai, R S; Will, C L; Lührmann, R; Schümperli, Daniel; Müller, B (2001). Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein. EMBO journal, 20(19), pp. 5470-5479. Nature Publishing Group 10.1093/emboj/20.19.5470
Michel, F; Schümperli, Daniel; Müller, B (2000). Specificities of Caenorhabditis elegans and human hairpin binding proteins for the first nucleotide in the histone mRNA hairpin loop. RNA - a publication of the RNA Society, 6(11), pp. 1539-1550. Cold Spring Harbor Laboratory Press
Martin, F; Michel, F; Zenklusen, D; Müller, B; Schümperli, Daniel (2000). Positive and negative mutant selection in the human histone hairpin-binding protein using the yeast three-hybrid system. Nucleic acids research, 28(7), pp. 1594-1603. Oxford University Press 10.1093/nar/28.7.1594
Suter, Daniel; Tomasini, Reto; Reber, Ueli; Gorman, Linda; Kole, Ryszard; Schümperli, Daniel (1999). Double-target antisense U7 snRNAs promote efficient skipping of an aberrant exon in three human β-thalassemic mutations. Human molecular genetics, 8(13), pp. 2415-2423. Oxford University Press 10.1093/hmg/8.13.2415
Sierakowska, H; Sambade, M J; Schümperli, Daniel; Kole, R (1999). Sensitivity of splice sites to antisense oligonucleotides in vivo. RNA - a publication of the RNA Society, 5(3), pp. 369-377. Cold Spring Harbor Laboratory Press
Walther, T N; Wittop Koning, T H; Schümperli, Daniel; Müller, B (1998). A 5'-3' exonuclease activity involved in forming the 3' products of histone pre-mRNA processing in vitro. RNA - a publication of the RNA Society, 4(9), pp. 1034-1046. Cold Spring Harbor Laboratory Press
Gorman, L; Suter, D; Emerick, V; Schümperli, Daniel; Kole, R (1998). Stable alteration of pre-mRNA splicing patterns by modified U7 small nuclear RNAs. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 95(9), pp. 4929-4934. National Academy of Sciences NAS
Furger, A; Schaller, A; Schümperli, Daniel (1998). Functional importance of conserved nucleotides at the histone RNA 3' processing site. RNA - a publication of the RNA Society, 4(3), pp. 246-256. Cold Spring Harbor Laboratory Press
Müller, B; Schümperli, Daniel (1997). The U7 snRNP and the hairpin binding protein: Key players in histone mRNA metabolism. Seminars in cell & developmental biology, 8(6), pp. 567-576. Elsevier 10.1006/scdb.1997.0182
Wyler-Duda, P; Bernard, V; Stadler, M; Suter, D; Schümperli, Daniel (1997). Histone H4 mRNA from the nematode Ascaris lumbricoides is cis-spliced and polyadenylated. Biochimica et biophysica acta (BBA) - gene structure and expression, 1350(3), pp. 259-261. Elsevier 10.1016/S0167-4781(96)00235-7
Martin, F; Schaller, A; Eglite, S; Schümperli, Daniel; Müller, B (1997). The gene for histone RNA hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNA binding protein. EMBO journal, 16(4), pp. 769-778. Nature Publishing Group 10.1093/emboj/16.4.769
Gruber, Andreas; Stettler, P; Heiniger, P; Schümperli, Daniel; Lanzrein, B (1996). Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female. Journal of general virology, 77(11), pp. 2873-2879. Society for General Microbiology 10.1099/0022-1317-77-11-2873
Turner, P C; Whalen, A; Schümperli, Daniel; Matera, A G (1996). The bona fide mouse U7 snRNA gene maps to a different chromosome than two U7 pseudogenes. Genomics, 31(2), pp. 250-252. Elsevier 10.1006/geno.1996.0042
Stefanovic, B; Wittop Koning, T H; Schümperli, Daniel (1995). A synthetic histone pre-mRNA-U7 small nuclear RNA chimera undergoing cis cleavage in the cytoplasm of Xenopus oocytes. Nucleic acids research, 23(16), pp. 3152-3160. Information Retrieval Ltd.
Stefanovic, B; Hackl, W; Lührmann, R; Schümperli, Daniel (1995). Assembly, nuclear import and function of U7 snRNPs studied by microinjection of synthetic U7 RNA into Xenopus oocytes. Nucleic acids research, 23(16), pp. 3141-3151. Information Retrieval Ltd.
Albrecht, U; Wyler, T; Pfister-Wilhelm, R; Gruber, Andreas; Stettler, P; Heiniger, P; Kurt, E; Schümperli, Daniel; Lanzrein, B (1994). Polydnavirus of the parasitic wasp Chelonus inanitus (Braconidae): characterization, genome organization and time point of replication. Journal of general virology, 75(12), pp. 3353-3363. Society for General Microbiology 10.1099/0022-1317-75-12-3353
Spycher, C; Streit, A; Stefanovic, B; Albrecht, D; Koning, T H; Schümperli, Daniel (1994). 3' end processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA. Nucleic acids research, 22(20), pp. 4023-4030. Information Retrieval Ltd.
Wittop Koning, T H; Schümperli, Daniel (1994). RNAs and ribonucleoproteins in recognition and catalysis. European journal of biochemistry, 219(1-2), pp. 25-42. Blackwell Science 10.1111/j.1432-1033.1994.tb19911.x
Streit, A; Koning, T W; Soldati, D; Melin, L; Schümperli, Daniel (1993). Variable effects of the conserved RNA hairpin element upon 3' end processing of histone pre-mRNA in vitro. Nucleic acids research, 21(7), pp. 1569-1575. Information Retrieval Ltd.
Grimm, C; Stefanovic, B; Schümperli, Daniel (1993). The low abundance of U7 snRNA is partly determined by its Sm binding site. The EMBO Journal, 12(3), pp. 1229-1238. EMBO Press
Mital, R; Albrecht, U; Schümperli, Daniel (1993). Detection of UV-induced RNA:protein crosslinks in snRNPs by oligonucleotides complementary to the snRNA. Nucleic acids research, 21(4), pp. 1049-1050. Information Retrieval Ltd.
Melin, L; Soldati, D; Mital, R; Streit, A; Schümperli, Daniel (1992). Biochemical demonstration of complex formation of histone pre-mRNA with U7 small nuclear ribonucleoprotein and hairpin binding factors. The EMBO Journal, 11(2), pp. 691-697. EMBO Press
Harris, M E; Böhni, R; Schneiderman, M H; Ramamurthy, L; Schümperli, Daniel; Marzluff, W F (1991). Regulation of histone mRNA in the unperturbed cell cycle: evidence suggesting control at two posttranscriptional steps. Molecular and cellular biology, 11(5), pp. 2416-2424. American Society for Microbiology
Gruber, Andreas; Soldati, D; Burri, M; Schümperli, Daniel (1991). Isolation of an active gene and of two pseudogenes for mouse U7 small nuclear RNA. Biochimica et biophysica acta (BBA) - gene structure and expression, 1088(1), pp. 151-154. Elsevier 10.1016/0167-4781(91)90167-K
Gruber, Andreas; Streit, A; Reist, M; Benninger, P; Böhni, R; Schümperli, Daniel (1990). Structure of a mouse histone-encoding gene cluster. Gene, 95(2), pp. 303-304. Elsevier
Soldati, D; Schümperli, Daniel (1990). Structures of four human pseudogenes for U7 small nuclear RNA. Gene, 95(2), pp. 305-306. Elsevier
Stauber, C; Soldati, D; Lüscher, B; Schümperli, Daniel (1990). Histone-specific RNA 3' processing in nuclear extracts from mammalian cells. In: RNA Processing Part B: Specific Methods. Methods in enzymology: Vol. 181 (pp. 74-89). San Diego, CA: Academic Press
Meier, V S; Böhni, R; Schümperli, Daniel (1989). Nucleotide sequence of two mouse histone H4 genes. Nucleic acids research, 17(2), p. 795. Information Retrieval Ltd.
