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Khan, Amjad; Brouwer, Nelleke; Blank, Annika; Müller, Felix; Soldini, Davide; Noske, Aurelia; Gaus, Elisabeth; Brandt, Simone; Nagtegaal, Iris; Dawson, Heather; Thiran, Jean-Philippe; Perren, Aurel; Lugli, Alessandro; Zlobec, Inti (2023). Computer-Assisted Diagnosis of Lymph Node Metastases in Colorectal Cancers Using Transfer Learning With an Ensemble Model. Modern pathology, 36(5), p. 100118. Springer Nature 10.1016/j.modpat.2023.100118
Skoworonska, Magdalena; Blank, Annika; Centeno, Irene; Hammer, Caroline; Perren, Aurel; Zlobec, Inti; Rau, Tilman T (2023). Real-life data from standardized preanalytical coding (SPREC) in tissue biobanking and its dual use for sample characterization and process optimization. The journal of pathology: clinical research, 9(2), pp. 137-148. Wiley 10.1002/cjp2.305
Liu, Shengchen; Kohler, Andreas; Langer, Rupert; Jakob, Manuel O; Salm, Lilian; Blank, Annika; Beldi, Guido; Jakob, Stephan M (2022). Hepatic blood flow regulation but not oxygen extraction capability is impaired in prolonged experimental abdominal sepsis. American journal of physiology - gastrointestinal and liver physiology, 323(4), G348-G361. American Physiological Society 10.1152/ajpgi.00109.2022
Acs, Balazs; Leung, Samuel C Y; Kidwell, Kelley M; Arun, Indu; Augulis, Renaldas; Badve, Sunil S; Bai, Yalai; Bane, Anita L; Bartlett, John M S; Bayani, Jane; Bigras, Gilbert; Blank, Annika; Buikema, Henk; Chang, Martin C; Dietz, Robin L; Dodson, Andrew; Fineberg, Susan; Focke, Cornelia M; Gao, Dongxia; Gown, Allen M; ... (2022). Systematically higher Ki67 scores on core biopsy samples compared to corresponding resection specimen in breast cancer: a multi-operator and multi-institutional study. Modern pathology, 35(10), pp. 1362-1369. Springer Nature 10.1038/s41379-022-01104-9
Nguyen, Huu-Giao; Lundström, Oxana; Blank, Annika; Dawson, Heather; Lugli, Alessandro; Anisimova, Maria; Zlobec, Inti (2022). Image-based assessment of extracellular mucin-to-tumor area predicts consensus molecular subtypes (CMS) in colorectal cancer. Modern pathology, 35(2), pp. 240-248. Springer Nature 10.1038/s41379-021-00894-8
Khan, Amjad; Janowczyk, Andrew; Müller, Felix; Blank, Annika; Nguyen, Huu Giao; Abbet, Christian; Studer, Linda; Lugli, Alessandro; Dawson, Heather; Thiran, Jean-Philippe; Zlobec, Inti (2022). Impact of scanner variability on lymph node segmentation in computational pathology. Journal of pathology informatics, 13(100127), p. 100127. Elsevier 10.1016/j.jpi.2022.100127
Georges, Nadine DF; Oberli, Beatrice; Rau, Tilman; Galván, José; Nagtegaal, Iris D; Dawson, Heather; Blank, Annika; Kohler, Andreas; Lugli, Alessandro; Zlobec, Inti (2021). Tumour budding and CD8+ T-cells: "attackers" and "defenders" in rectal cancer with and without neoadjuvant chemoradiotherapy. Histopathology, 78(7), pp. 1009-1018. Wiley 10.1111/his.14319
Studer, Linda; Blank, Annika; Bokhorst, John-Melle; Nagtegaal, Iris D; Zlobec, Inti; Lugli, Alessandro; Fischer, Andreas; Dawson, Heather (2021). Taking Tumour Budding to the Next Frontier - a Post-ITBCC 2016 Review. Histopathology, 78(4), pp. 476-484. Wiley 10.1111/his.14267
Nguyen, Huu-Giao; Blank, Annika; Dawson, Heather E.; Lugli, Alessandro; Zlobec, Inti (2021). Classification of colorectal tissue images from high throughput tissue microarrays by ensemble deep learning methods. Scientific reports, 11(1), p. 2371. Springer Nature 10.1038/s41598-021-81352-y
Berezowska, Sabina; Schmid, Andreas; Losmanová, Tereza; Trippel, Mafalda; Blank, Annika; Banz, Yara; Jakob, Stephan M.; Langer, Rupert (2021). Frequency and Significance of Pathologic Pulmonary Findings in Postmortem Examinations—A Single Center Experience before COVID-19. Diagnostics, 11(5) MDPI 10.3390/diagnostics11050894
Burren, Sandra; Reche, Katharina; Blank, Annika; Galván, José A.; Dawson, Heather; Berger, Martin D.; Zlobec, Inti; Lugli, Alessandro (2021). RHAMM in liver metastases of stage IV colorectal cancer with mismatch-repair proficient status correlates with tumor budding, cytotoxic T-cells and PD-1/PD-L1. Pathology, research and practice, 223, p. 153486. Elsevier 10.1016/j.prp.2021.153486
Katsidzira, Leolin; Mudombi, Wisdom F; Makunike-Mutasa, Rudo; Yilmaz, Bahtiyar; Blank, Annika; Rogler, Gerhard; Macpherson, Andrew; Vavricka, Stephan; Gangaidzo, Innocent; Misselwitz, Benjamin (2020). Inflammatory bowel disease in sub-Saharan Africa: a protocol of a prospective registry with a nested case-control study. BMJ open, 10(12), e039456. BMJ Publishing Group 10.1136/bmjopen-2020-039456
Krug, Sebastian; Weissbach, Julia; Blank, Annika; Perren, Aurel; Haybaeck, Johannes; Fendrich, Volker; Rinke, Anja; Gress, Thomas Mathias; Rosendahl, Jonas; Michl, Patrick (2020). CUX1-Transcriptional Master Regulator of Tumor Progression in Pancreatic Neuroendocrine Tumors. Cancers, 12(7) MDPI AG 10.3390/cancers12071957
Zlobec, Inti; Dawson, Heather E.; Blank, Annika; Bokhorst, John-Melle; Berger, Martin D.; Nagtegaal, Iris D; Lugli, Alessandro (2020). Are tumour grade and tumour budding equivalent in colorectal cancer? A retrospective analysis of 771 patients. European journal of cancer, 130, pp. 139-145. Elsevier 10.1016/j.ejca.2020.02.007
Dawson, Heather; Christe, Lucine; Eichmann, Micha; Reinhard, Stefan; Zlobec, Inti; Blank, Annika; Lugli, Alessandro (2020). Tumour Budding/T-cell infiltrates in Colorectal Cancer: Proposal of a Novel Combined Score. Histopathology, 76(4), pp. 572-580. Wiley 10.1111/his.14006
Doulberis, Michael; Srivastava, Simone; Polyzos, Stergios A; Kountouras, Jannis; Papaefthymiou, Apostolis; Klukowska-Rötzler, Jolanta; Blank, Annika; Exadaktylos, Aristomenis K; Srivastava, David S (2020). Active Helicobacter pylori Infection is Independently Associated with Nonalcoholic Steatohepatitis in Morbidly Obese Patients. Journal of clinical medicine, 9(4), p. 933. MDPI 10.3390/jcm9040933
Langer, Rupert; Tröhler, Alexandra; Schnüriger, Beat; Perren, Aurel; Blank, Annika; Banz Wälti, Yara; Trippel, Mafalda; Candinas, Daniel; Lugli, Alessandro (2019). Implementation of modern tools in autopsy practice-the way towards contemporary postmortal diagnostics. Virchows Archiv, 474(2), pp. 149-158. Springer 10.1007/s00428-018-2482-2
Blank, Annika; Schenker, Carla; Dawson, Heather; Beldi, Guido; Zlobec, Inti; Lugli, Alessandro (2019). Evaluation of Tumor Budding in Primary Colorectal Cancer and Corresponding Liver Metastases Based on H&E and Pancytokeratin Staining. Frontiers in medicine, 6, p. 247. Frontiers 10.3389/fmed.2019.00247
Krug, Sebastian; Abbassi, Rami; Griesmann, Heidi; Sipos, Bence; Wiese, Dominik; Rexin, Peter; Blank, Annika; Perren, Aurel; Haybaeck, Johannes; Hüttelmaier, Stefan; Rinke, Anja; Gress, Thomas M; Michl, Patrick (2018). Therapeutic Targeting of Tumor-Associated Macrophages in Pancreatic Neuroendocrine Tumors. International journal of cancer, 143(7), pp. 1806-1816. Wiley-Blackwell 10.1002/ijc.31562
Blank, Annika; Roberts, Daniel Edward; Dawson, Heather; Zlobec, Inti; Lugli, Alessandro (2018). Tumor Heterogeneity in Primary Colorectal Cancer and Corresponding Metastases. Does the Apple Fall Far From the Tree? Frontiers in medicine, 5, p. 234. Frontiers 10.3389/fmed.2018.00234
Uccella, Silvia; Blank, Annika; Maragliano, Roberta; Sessa, Fausto; Perren, Aurel; La Rosa, Stefano (2017). Calcitonin-Producing Neuroendocrine Neoplasms of the Pancreas: Clinicopathological Study of 25 Cases and Review of the Literature. Endocrine pathology, 28(4), pp. 351-361. Springer 10.1007/s12022-017-9505-4
Wiedmer, Tabea; Blank, Annika; Pantasis, Sophia; Normand, Lea Elena Haaning; Bill, Ruben; Krebs, Philippe; Tschan, Mario; Marinoni, Ilaria; Perren, Aurel (2017). Autophagy inhibition improves sunitinib efficacy in pancreatic neuroendocrine tumors via a lysosome-dependent mechanism. Molecular cancer therapeutics, 16(11), pp. 2502-2515. American Association for Cancer Research AACR 10.1158/1535-7163.MCT-17-0136
Blank, Annika; Dawson, Heather; Hammer, Caroline; Perren, Aurel; Lugli, Alessandro (2017). [Lean management in the pathology laboratory]. Der Pathologe, 38(6), pp. 540-544. Springer 10.1007/s00292-017-0388-4
Stein, Alexandra Vanessa; Dislich, Bastian; Blank, Annika; Guldener, Lars; Kröll, Dino; Seiler, Christian A.; Langer, Rupert (2017). High intratumoural but not peritumoural inflammatory host response is associated with better prognosis in primary resected oesophageal adenocarcinomas. Pathology, 49(1), pp. 30-37. Elsevier 10.1016/j.pathol.2016.10.005
Dawson, Heather; Novotny, Alexander; Becker, Karen; Reim, Daniel; Langer, Rupert; Gullo, Irene; Svrcek, Magali; Niess, Jan Hendrik; Tutuian, Radu; Truninger, Kaspar; Diamantis, Ioannis; Blank, Annika; Zlobec, Inti; Riddell, Robert H; Carneiro, Fatima; Fléjou, Jean-François; Genta, Robert M; Lugli, Alessandro (2016). Macroscopy predicts tumor progression in gastric cancer: A retrospective patho-historical analysis based on Napoleon Bonaparte's autopsy report. Digestive and liver disease, 48(11), pp. 1378-1385. Elsevier 10.1016/j.dld.2016.07.013
Schmitt Kurrer, Anja; Marinoni, Ilaria; Blank, Annika; Perren, Aurel (2016). New Genetics and Genomic Data on Pancreatic Neuroendocrine Tumors: Implications for Diagnosis, Treatment, and Targeted Therapies. Endocrine pathology, 27(3), pp. 200-204. Springer 10.1007/s12022-016-9447-2
Schmitt Kurrer, Anja; Blank, Annika; Marinoni, Ilaria; Komminoth, Paul; Perren, Aurel (2016). Histopathology of NET: Current concepts and new developments. Best practice & research. Clinical endocrinology & metabolism, 30(1), pp. 33-43. Elsevier 10.1016/j.beem.2016.02.002
Kollár, Attila; Blank, Annika; Perren, Aurel; Bütikofer, Lukas; Stettler, Christoph; Christ, Emanuel (2016). Additional malignancies in patients with neuroendocrine tumours: analysis of the SwissNET registry. Swiss medical weekly, 146, w14362. EMH Schweizerischer Ärzteverlag 10.4414/smw.2016.14362
Blank, Annika; Wehweck, Laura; Marinoni, Ilaria; Boos, Laura Amanda Meret Sophie; Bergmann, Frank; Schmitt Kurrer, Anja; Perren, Aurel (2015). Interlaboratory variability of MIB1 staining in well-differentiated pancreatic neuroendocrine tumors. Virchows Archiv, 467(5), pp. 543-550. Springer 10.1007/s00428-015-1843-3
Blank, Annika; Schmitt, Anja; Perren, Aurel (2015). Pathology: Classification and Immunoprofile. Frontiers of hormone research, 44, pp. 104-114. Basel: Karger 10.1159/000382135
Waser, Beatrice; Blank, Annika; Karamitopoulou, Evanthia; Perren, Aurel; Reubi, Jean-Claude (2014). Glucagon-like-peptide-1 receptor expression in normal and diseased human thyroid and pancreas. Modern pathology, 28(3), pp. 391-402. Nature Publishing Group 10.1038/modpathol.2014.113
Schmitt Kurrer, Anja; Pavel, Marianne; Rudolph, Thomas; Dawson, Heather; Blank, Annika; Komminoth, Paul; Vassella, Erik; Perren, Aurel (2014). Prognostic and predictive roles of MGMT protein expression and promoter methylation in sporadic pancreatic neuroendocrine neoplasms. Neuroendocrinology, 100(1), pp. 35-44. Karger 10.1159/000365514
Runge, Tina; Blank, Annika; Schäfer, Stephan C.; Candinas, Daniel; Gloor, Beat; Angst, Eliane (2013). A retroperitoneal bronchogenic cyst mimicking a pancreatic or adrenal mass. Case reports in gastroenterology, 7(3), pp. 428-432. Karger 10.1159/000355879
Blank, Annika; Schmitt, Anja M; Korpershoek, Esther; van Nederveen, Francien; Rudolph, Thomas; Weber, Nicole; Strebel, Räto Thomas; de Krijger, Ronald; Komminoth, Paul; Perren, Aurel (2010). SDHB loss predicts malignancy in pheochromocytomas/sympathethic paragangliomas, but not through hypoxia signalling. Endocrine-related cancer, 17(4), pp. 919-28. Bristol: BioScientifica Ltd. 10.1677/ERC-09-0316
Stein, Alexandra; Blank, Annika; Guldener, Lars; Dislich, Bastian; Kröll, Dino; Seiler, Christian A.; Langer, Rupert (2015). High intratumoral levels of FoxP3+ lymphocytes are associated with better prognosis in primary resected esophageal adenocarcinomas. (Submitted). In: Schweizer Pathologentag.
