Fellay, Jacques

Fernbach, Sonja; Mair, Nina K; Abela, Irene A; Groen, Kevin; Kuratli, Roger; Lork, Marie; Thorball, Christian W; Bernasconi, Enos; Filippidis, Paraskevas; Leuzinger, Karoline; Notter, Julia; Rauch, Andri; Hirsch, Hans H; Huber, Michael; Günthard, Huldrych F; Fellay, Jacques; Kouyos, Roger D; Hale, Benjamin G (2024). Loss of tolerance precedes triggering and lifelong persistence of pathogenic type I interferon autoantibodies. Journal of experimental medicine, 221(9) Rockefeller University Press 10.1084/jem.20240365

Neuner-Jehle, Nadia; Zeeb, Marius; Thorball, Christian W; Fellay, Jacques; Metzner, Karin J; Frischknecht, Paul; Neumann, Kathrin; Leeman, Christine; Rauch, Andri; Stöckle, Marcel; Huber, Michael; Perreau, Matthieu; Bernasconi, Enos; Notter, Julia; Hoffmann, Matthias; Leuzinger, Karoline; Günthard, Huldrych F; Pasin, Chloé; Kouyos, Roger D (2024). Using viral diversity to identify HIV-1 variants under HLA-dependent selection in a systematic viral genome-wide screen. PLoS pathogens, 20(8), e1012385. Public Library of Science 10.1371/journal.ppat.1012385

Damas, José; Munting, Aline; Fellay, Jacques; Haerry, David; Marzolini, Catia; Tarr, Philip E; Steffen, Ana; Braun, Dominique L; Stoeckle, Marcel; Bernasconi, Enos; Tshikung, Olivier Nawej; Fux, Christoph A; Darling, Katharine E A; Béguelin, Charles; Wandeler, Gilles; Cavassini, Matthias; Surial, Bernard (2024). Weight, anthropometric and metabolic changes after discontinuing antiretroviral therapy containing tenofovir alafenamide (TAF) in people with HIV. (In Press). Clinical infectious diseases Oxford University Press 10.1093/cid/ciae189

Zeeb, Marius; Pasin, Chloé; Cavassini, Matthias; Bieler-Aeschlimann, Mélanie; Frischknecht, Paul; Kusejko, Katharina; Fellay, Jacques; Blanquart, François; Metzner, Karin J; Neumann, Kathrin; Jörimann, Lisa; Tschumi, Jasmin; Bernasconi, Enos; Huber, Michael; Kovari, Helen; Leuzinger, Karoline; Notter, Julia; Perreau, Matthieu; Rauch, Andri; Ramette, Alban; ... (2024). Self-reported neurocognitive complaints in the Swiss HIV Cohort Study: a viral genome-wide association study. Brain Communications, 6(4) Oxford University Press 10.1093/braincomms/fcae188

Schwenke, Johannes M; Thorball, Christian W; Schöpf, Isabella C; Ryom, Lene; Hasse, Barbara; Lamy, Olivier; Calmy, Alexandra; Wandeler, Gilles; Marzolini, Catia; Kahlert, Christian R; Bernasconi, Enos; Kouyos, Roger; Günthard, Huldrych F; Ledergerber, Bruno; Fellay, Jacques; Burkhalter, Felix; Tarr, Philip E (2023). Association of a Polygenic Risk Score with Osteoporosis in People Living with HIV: The Swiss HIV Cohort Study. The journal of infectious diseases, 228(6), pp. 742-750. Oxford University Press 10.1093/infdis/jiad179

McLaren, Paul J; Porreca, Immacolata; Iaconis, Gennaro; Mok, Hoi Ping; Mukhopadhyay, Subhankar; Karakoc, Emre; Cristinelli, Sara; Pomilla, Cristina; Bartha, István; Thorball, Christian W; Tough, Riley H; Angelino, Paolo; Kiar, Cher S; Carstensen, Tommy; Fatumo, Segun; Porter, Tarryn; Jarvis, Isobel; Skarnes, William C; Bassett, Andrew; DeGorter, Marianne K; ... (2023). Author Correction: Africa-specific human genetic variation near CHD1L associates with HIV-1 load. Nature, 621(7979), E42. Springer Nature 10.1038/s41586-023-06591-7

McLaren, Paul J; Porreca, Immacolata; Iaconis, Gennaro; Mok, Hoi Ping; Mukhopadhyay, Subhankar; Karakoc, Emre; Cristinelli, Sara; Pomilla, Cristina; Bartha, István; Thorball, Christian W; Tough, Riley H; Angelino, Paolo; Kiar, Cher S; Carstensen, Tommy; Fatumo, Segun; Porter, Tarryn; Jarvis, Isobel; Skarnes, William C; Bassett, Andrew; DeGorter, Marianne K; ... (2023). Africa-specific human genetic variation near CHD1L associates with HIV-1 load. Nature, 620(7976), pp. 1025-1030. Springer Nature 10.1038/s41586-023-06370-4

Avery, Emma F; Kleynhans, Julia N; Ledergerber, Bruno; Schoepf, Isabella C; Thorball, Christian W; Kootstra, Neeltje A; Reiss, Peter; Ryom, Lene; Braun, Dominique L; Thurnheer, Maria C; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F; Tarr, Philip E (2023). Leukocyte Count and Coronary Artery Disease Events in People with HIV: A Longitudinal Study. Clinical infectious diseases, 76(11), pp. 1969-1979. Oxford University Press 10.1093/cid/ciad033

Schoepf, Isabella C; Esteban-Cantos, Andrés; Thorball, Christian W; Rodés, Berta; Reiss, Peter; Rodríguez-Centeno, Javier; Riebensahm, Carlotta; Braun, Dominique L; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Thurnheer, Maria Christine; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F; Arribas, José R; Ledergerber, Bruno and Tarr, Philip E (2023). Epigenetic ageing accelerates before antiretroviral therapy and decelerates after viral suppression in people with HIV in Switzerland: a longitudinal study over 17 years. The Lancet. Healthy longevity, 4(5), e211-e218. Elsevier 10.1016/S2666-7568(23)00037-5

Zwyer, Michaela; Rutaihwa, Liliana K; Windels, Etthel; Hella, Jerry; Menardo, Fabrizio; Sasamalo, Mohamed; Sommer, Gregor; Schmülling, Lena; Borrell, Sonia; Reinhard, Miriam; Dötsch, Anna; Hiza, Hellen; Stritt, Christoph; Sikalengo, George; Fenner, Lukas; De Jong, Bouke C; Kato-Maeda, Midori; Jugheli, Levan; Ernst, Joel D; Niemann, Stefan; ... (2023). Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania. PLoS pathogens, 19(4), e1010893. Public Library of Science 10.1371/journal.ppat.1010893

Schoepf, Isabella C; Thorball, Christian W; Kovari, Helen; Ledergerber, Bruno; Buechel, Ronny R; Calmy, Alexandra; Weber, Rainer; Kaufmann, Philipp A; Nkoulou, René; Schwenke, Johannes M; Braun, Dominique L; Fellay, Jacques; Tarr, Philip E (2023). Polygenic Risk Scores for Prediction of Subclinical Coronary Artery Disease in Persons Living with HIV: The Swiss HIV Cohort Study. Clinical infectious diseases, 76(1), pp. 48-56. Oxford University Press 10.1093/cid/ciac758

Nadeau, Sarah; Thorball, Christian W; Kouyos, Roger; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Rauch, Andri; Hirsch, Hans H; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Fellay, Jacques; Mitov, Venelin; Stadler, Tanja (2022). A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits. Molecular Biology and Evolution, 39(8) Oxford University Press 10.1093/molbev/msac163

Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella V; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Libby, Peter; Boerwinkle, Eric; McLaren, Paul J; Ballantyne, Christie M; Grinspoon, Steven; Natarajan, Pradeep; Fellay, Jacques (2022). Author Correction: Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV. Scientific Reports, 12(1), p. 11638. Nature Publishing Group 10.1038/s41598-022-16151-0

Nguyen, Huyen; Hampel, Benjamin; Nuñez, David Garcia; Battegay, Manuel; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Fellay, Jacques; Rudolph, Hannes; Huber, Michael; Leuzinger, Karoline; Perreau, Matthieu; Scherrer, Alexandra; Ramette, Alban Nicolas; Yerly, Sabine; Günthard, Huldrych F; Kouyos, Roger D and Kusejko, Katharina (2022). Correction to: Identifying and Characterizing Trans Women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group. Clinical infectious diseases, 74(12), p. 2266. Oxford University Press 10.1093/cid/ciac242

Schoepf, Isabella C; Thorball, Christian W; Ledergerber, Bruno; Kootstra, Neeltje A; Reiss, Peter; Raffenberg, Marieke; Engel, Tanja; Braun, Dominique L; Hasse, Barbara; Thurnheer, Christine; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Arribas, José R; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F and Tarr, Philip E (2022). Telomere Length Declines In Persons Living With HIV Before Antiretroviral Therapy Start But Not After Viral Suppression: A Longitudinal Study Over >17 Years. The journal of infectious diseases, 225(9), pp. 1581-1591. Oxford University Press 10.1093/infdis/jiab603

Nguyen, Huyen; Hampel, Benjamin; Nuñez, David Garcia; Battegay, Manuel; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Fellay, Jacques; Rudolph, Hannes; Huber, Michael; Leuzinger, Karoline; Perreau, Matthieu; Scherrer, Alexandra; Ramette, Alban Nicolas; Yerly, Sabine; Günthard, Huldrych F; Kouyos, Roger D and Kusejko, Katharina (2022). Identifying and Characterizing Trans women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group. Clinical infectious diseases, 74(8), pp. 1468-1475. Oxford University Press 10.1093/cid/ciab628

Scherrer, Alexandra U; Traytel, Anna; Braun, Dominique L; Calmy, Alexandra; Battegay, Manuel; Cavassini, Matthias; Furrer, Hansjakob; Schmid, Patrick; Bernasconi, Enos; Stoeckle, Marcel; Kahlert, Christian; Trkola, Alexandra; Kouyos, Roger D; Tarr, Philip; Marzolini, Catia; Wandeler, Gilles; Fellay, Jacques; Bucher, Heiner; Yerly, Sabine; Suter, Franziska; ... (2022). Cohort Profile Update: The Swiss HIV Cohort Study (SHCS). International journal of epidemiology, 51(1), 33-34j. Oxford University Press 10.1093/ije/dyab141

Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella V; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Libby, Peter; Boerwinkle, Eric; McLaren, Paul J; Ballantyne, Christie M; Grinspoon, Steven; Natarajan, Pradeep; Fellay, Jacques (2022). Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV. Scientific reports, 12(1), p. 577. Springer Nature 10.1038/s41598-021-04308-2

Cordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; Keitel, Kristina; Docquier, Mylène; Guex, Nicolas; Iseli, Christian; Vieille, Gael; Le Mercier, Philippe; Gleizes, Anne; Samaka, Josephine; Mlaganile, Tarsis; Kagoro, Frank; Masimba, John; Said, Zamzam; Temba, Hosiana; Elbanna, Gasser H; Tapparel, Caroline; Zanella, Marie-Celine; ... (2021). Blood virosphere in febrile Tanzanian children. Emerging microbes & infections, 10(1), pp. 982-993. Taylor & Francis 10.1080/22221751.2021.1925161

Schoepf, Isabella C; Thorball, Christian W; Ledergerber, Bruno; Engel, Tanja; Raffenberg, Marieke; Kootstra, Neeltje A; Reiss, Peter; Hasse, Barbara; Marzolini, Catia; Thurnheer, Christine; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Kouyos, Roger; Günthard, Huldrych F; Fellay, Jacques; Tarr, Philip E (2021). Coronary Artery Disease–Associated and Longevity-Associated Polygenic Risk Scores for Prediction of Coronary Artery Disease Events in Persons Living With Human Immunodeficiency Virus: The Swiss HIV Cohort Study. Clinical infectious diseases, 73(9), pp. 1597-1604. The University of Chicago Press 10.1093/cid/ciab521

Engel, Tanja; Raffenberg, Marieke; Schoepf, Isabella C; Kootstra, Neeltje A; Reiss, Peter; Thorball, Christian W; Hasse, Barbara; Hirzel, Cédric; Wissel, Kerstin; Roth, Jan A; Bernasconi, Enos; Darling, Katharine E A; Calmy, Alexandra; Fellay, Jacques; Kouyos, Roger D; Günthard, Huldrych F; Ledergerber, Bruno; Tarr, Philip E (2021). Telomere Length, Traditional Risk Factors, HIV-related Factors and Coronary Artery Disease Events in Swiss Persons Living with HIV. Clinical infectious diseases, 73(7), e2070-e2076. Oxford University Press 10.1093/cid/ciaa1034

Thorball, Christian W; Oudot-Mellakh, Tiphaine; Ehsan, Nava; Hammer, Christian; Santoni, Federico A; Niay, Jonathan; Costagliola, Dominique; Goujard, Cécile; Meyer, Laurence; Wang, Sophia S; Hussain, Shehnaz K; Theodorou, Ioannis; Cavassini, Matthias; Rauch, Andri; Battegay, Manuel; Hoffmann, Matthias; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Mohammadi, Pejman; ... (2021). Genetic variation near CXCL12 is associated with susceptibility to HIV-related non-Hodgkin lymphoma. Haematologica - the hematology journal, 106(8), pp. 2233-2241. Ferrata-Storti Foundation 10.3324/haematol.2020.247023

Dietrich, Léna G; Thorball, Christian W; Ryom, Lene; Burkhalter, Felix; Hasse, Barbara; Thurnheer, Maria Christine; Weisser, Maja; Schmid, Patrick; Bernasconi, Enos; Darling, Kathrine E A; Buvelot, Hélène; Fellay, Jacques; Ledergerber, Bruno; Tarr, Philip E (2021). Rapid Progression of Kidney Dysfunction in Swiss People Living with HIV: Contribution of Polygenic Risk Score and D:A:D Clinical Risk Score. The journal of infectious diseases, 223(12), pp. 2145-2153. Oxford University Press 10.1093/infdis/jiaa695

Nguyen, Huyen; Thorball, Christian Wandell; Fellay, Jacques; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Hirsch, Hans H; Kusejko, Katharina; Thurnheer, Maria Christine; Battegay, Manuel; Cavassini, Matthias; Kahlert, Christian R; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D (2021). Systematic screening of viral and human genetic variation identifies antiretroviral resistance and immune escape link. eLife, 10 eLife Sciences Publications 10.7554/eLife.67388

Rüeger, Sina; Hammer, Christian; Loetscher, Alexis; McLaren, Paul J; Lawless, Dylan; Naret, Olivier; Khanna, Nina; Bernasconi, Enos; Cavassini, Matthias; Günthard, Huldrych F; Kahlert, Christian R; Rauch, Andri; Depledge, Daniel P; Morfopoulou, Sofia; Breuer, Judith; Zdobnov, Evgeny; Fellay, Jacques (2021). The influence of human genetic variation on Epstein-Barr virus sequence diversity. Scientific reports, 11(1), p. 4586. Springer Nature 10.1038/s41598-021-84070-7

Benet, Susana; Gálvez, Cristina; Drobniewski, Francis; Kontsevaya, Irina; Arias, Lilibeth; Monguió-Tortajada, Marta; Erkizia, Itziar; Urrea, Victor; Ong, Ruo-Yan; Luquin, Marina; Dupont, Maeva; Chojnacki, Jakub; Dalmau, Judith; Cardona, Paula; Neyrolles, Olivier; Lugo-Villarino, Geanncarlo; Vérollet, Christel; Julián, Esther; Furrer, Hansjakob; Günthard, Huldrych F; ... (2021). Dissemination of Mycobacterium tuberculosis is associated to a SIGLEC1 null variant that limits antigen exchange via trafficking extracellular vesicles. Journal of extracellular vesicles, 10(3), e12046. Taylor & Francis 10.1002/jev2.12046

Borghesi, Alessandro; Trück, Johannes; Asgari, Samira; Sancho-Shimizu, Vanessa; Agyeman, Philipp KA; Bellos, Evangelos; Giannoni, Eric; Stocker, Martin; Posfay-Barbe, Klara M; Heininger, Ulrich; Bernhard-Stirnemann, Sara; Niederer-Loher, Anita; Kahlert, Christian R; Natalucci, Giancardlo; Relly, Christa; Riedel, Thomas; Kuehni, Claudia E; Thorball, Christian W; Chaturvedi, Nimisha; Martinon-Torres, Federico; ... (2020). Whole-exome sequencing for the identification of rare variants in primary immunodeficiency genes in children with sepsis - a prospective population-based cohort study. Clinical infectious diseases, 71(10), e614-e623. The University of Chicago Press 10.1093/cid/ciaa290

Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Gunthard, Huldrych; Libby, Peter; Boerwinkle, Eric; McLaren, Paul; Ballantyne, Christie M; Grinspoon, Steven K; Natarajan, Pradeep; Fellay, Jacques (7 November 2020). Increased CHIP Prevalence Amongst People Living with HIV. (medRxiv). Cold Spring Harbor Laboratory 10.1101/2020.11.06.20225607

Wan, Chenjie; Bachmann, Nadine; Mitov, Venelin; Blanquart, François; Céspedes, Susana Posada; Turk, Teja; Neumann, Kathrin; Beerenwinkel, Niko; Bogojeska, Jasmina; Fellay, Jacques; Roth, Volker; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Battegay, Manuel; Walti, Laura; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; ... (2020). Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART. Nature communications, 11(1), p. 5542. Nature Publishing Group 10.1038/s41467-020-19198-7

Thorball, Christian W; Borghesi, Alessandro; Bachmann, Nadine; Von Siebenthal, Chantal; Vongrad, Valentina; Turk, Teja; Neumann, Kathrin; Beerenwinkel, Niko; Bogojeska, Jasmina; Roth, Volker; Kok, Yik Lim; Parbhoo, Sonali; Wieser, Mario; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Battegay, Manuel; Rauch, Andri; Schmid, Patrick; ... (2020). Host genomics of the HIV-1 reservoir size and its decay rate during suppressive antiretroviral treatment. Journal of acquired immune deficiency syndromes, 85(4), pp. 517-524. Wolters Kluwer Health 10.1097/QAI.0000000000002473

Raisaro, Jean Louis; Troncoso-Pastoriza, Juan Ramòn; Pradervand, Sylvain; Cuendet, Michel; Misbach, Mickael; Sa, Joao; Marino, Francesco; Freundler, Nicolas; Rosat, Nicolas; Cavin, David; Leichtle, Alexander; Fellay, Jacques; Michielin, Olivier; Hubaux, Jean-Pierre (2020). SPHN/PHRT - MedCo in Action: Empowering the Swiss Molecular Tumor Board with Privacy-Preserving and Real-Time Patient Discovery. Studies in health technology and informatics, 270, pp. 1161-1162. IOS Press 10.3233/SHTI200345

Salathé, Marcel; Althaus, Christian L; Neher, Richard; Stringhini, Silvia; Hodcroft, Emma; Fellay, Jacques; Zwahlen, Marcel; Senti, Gabriela; Battegay, Manuel; Wilder-Smith, Annelies; Eckerle, Isabella; Egger, Matthias; Low, Nicola (2020). COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation. Swiss medical weekly, 150, w20225. EMH Media 10.4414/smw.2020.20225

Dietrich, Léna G; Barceló, Catalina; Thorball, Christian W; Ryom, Lene; Burkhalter, Felix; Hasse, Barbara; Furrer, Hansjakob; Weisser, Maja; Steffen, Ana; Bernasconi, Enos; Cavassini, Matthias; de Seigneux, Sophie; Csajka, Chantal; Fellay, Jacques; Ledergerber, Bruno; Tarr, Philip E (2020). Contribution of genetic background and clinical D:A:D risk score to chronic kidney disease in Swiss HIV-positive persons with normal baseline estimated glomerular filtration rate. Clinical infectious diseases, 70(5), pp. 890-897. Oxford University Press 10.1093/cid/ciz280

Barceló, Catalina; Guidi, Monia; Thorball, Christian W; Hammer, Christian; Chaouch, Aziz; Scherrer, Alexandra U; Hasse, Barbara; Cavassini, Matthias; Furrer, Hansjakob; Calmy, Alexandra; Haubitz, Sebastian; Bernasconi, Enos; Buclin, Thierry; Fellay, Jacques; Tarr, Philip E; Csajka, Chantal (2020). Impact of Genetic and Nongenetic Factors on Body Mass Index and Waist-Hip Ratio Change in HIV-Infected Individuals Initiating Antiretroviral Therapy. Open Forum Infectious Diseases, 7(1), ofz464. Oxford University Press 10.1093/ofid/ofz464

Junier, Thomas; Huber, Michael; Schmutz, Stefan; Kufner, Verena; Zagordi, Osvaldo; Neuenschwander, Stefan; Ramette, Alban; Kubacki, Jakub; Bachofen, Claudia; Qi, Weihong; Laubscher, Florian; Cordey, Samuel; Kaiser, Laurent; Beuret, Christian; Barbié, Valérie; Fellay, Jacques; Lebrand, Aitana (2019). Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial. Genes, 10(9) MDPI 10.3390/genes10090655

Nguyen, Huyen; Thorball, Christian W; Fellay, Jacques; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Kusjeko, Katharina; Bachmann, Nadine; Chaudron, Sandra E; Paioni, Paolo; Thurnheer Zürcher, Maria Christine; Battegay, Manuel; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger (2019). HIV transmission chains exhibit greater HLA-B homogeneity than randomly expected. Journal of acquired immune deficiency syndromes JAIDS, 81(5), pp. 508-515. Lippincott Williams & Wilkins 10.1097/QAI.0000000000002077

Asgari, Samira; Chaturvedi, Nimisha; Scepanovic, Petar; Hammer, Christian; Semmo, Nasser; Giostra, Emiliano; Müllhaupt, Beat; Angus, Peter; Thompson, Alexander J; Moradpour, Darius; Fellay, Jacques (2019). Human genomics of acute liver failure due to hepatitis B virus infection: An exome sequencing study in liver transplant recipients. Journal of viral hepatitis, 26(2), pp. 271-277. Wiley 10.1111/jvh.13019

Bibert, Stéphanie; Wójtowicz, Agnieszka; Taffé, Patrick; Tarr, Philip E; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Hoffmann, Matthias; Kaiser, Laurent; Osthoff, Michael; Fellay, Jacques; Cavassini, Matthias; Bochud, Pierre-Yves (2018). Interferon lambda 3/4 polymorphisms are associated with AIDS-related Kaposi's sarcoma. AIDS, 32(18), pp. 2759-2765. Lippincott Williams & Wilkins 10.1097/QAD.0000000000002004

Cordey, Samuel; Hartley, Mary-Anne; Keitel, Kristina; Laubscher, Florian; Brito, Francisco; Junier, Thomas; Kagoro, Frank; Samaka, Josephine; Masimba, John; Said, Zamzam; Temba, Hosiana; Mlaganile, Tarsis; Docquier, Mylène; Fellay, Jacques; Kaiser, Laurent; D'Acremont, Valérie (2018). Detection of novel astroviruses MLB1 and MLB2 in the sera of febrile Tanzanian children. Emerging microbes & infections, 7(1), p. 27. Taylor & Francis 10.1038/s41426-018-0025-1

Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; Fellay, Jacques; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Battegay, Manuel; Rauch, Andri; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Schmid, Patrick; Scherrer, Alexandra U; Müller, Viktor; Bonhoeffer, Sebastian; Kouyos, Roger; ... (2018). Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T Cell Decline and Per-Parasite Pathogenicity. Molecular Biology and Evolution, 35(1), pp. 27-37. Oxford University Press 10.1093/molbev/msx246

Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; Schanz, Merle; Huber, Michael; Braun, Dominique L; Hozé, Nathanael; Scherrer, Alexandra; Magnus, Carsten; Weber, Jacqueline; Uhr, Therese; Cippa, Valentina; Thorball, Christian W; Kuster, Herbert; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; ... (2016). Determinants of HIV-1 broadly neutralizing antibody induction. Nature medicine, 22(11), pp. 1260-1267. Nature Publishing Group 10.1038/nm.4187

Junier, Thomas; Rotger, Margalida; Biver, Emmanuel; Ledergerber, Bruno; Barceló, Catalina; Bartha, Istvan; Kovari, Helen; Schmid, Patrick; Fux, Christoph; Bernasconi, Enos; Brun del Re, Claudia; Weber, Rainer; Fellay, Jacques; Tarr, Philip E (2016). Contribution of Genetic Background and Clinical Risk Factors to Low-Trauma Fractures in Human Immunodeficiency Virus (HIV)-Positive Persons: The Swiss HIV Cohort Study. Open Forum Infectious Diseases, 3(2), ofw101. Oxford University Press 10.1093/ofid/ofw101

McLaren, Paul J; Raisaro, Jean Louis; Aouri, Manel; Rotger, Margalida; Ayday, Erman; Bartha, István; Delgado, Maria B; Vallet, Yannick; F Günthard, Huldrych; Cavassini, Matthias; Furrer, Hansjakob; Doco-Lecompte, Thanh; Marzolini, Catia; Schmid, Patrick; Di Benedetto, Caroline; Decosterd, Laurent A; Fellay, Jacques; Hubaux, Jean-Pierre; Telenti, Amalio (2016). Privacy-preserving genomic testing in the clinic: a model using HIV treatment. Genetics in medicine, 18(8), pp. 814-822. Palgrave Macmillan 10.1038/gim.2015.167

Asgari, Samira; McLaren, Paul J; Peake, Jane; Wong, Melanie; Wong, Richard; Bartha, Istvan; Francis, Joshua R; Abarca, Katia; Gelderman, Kyra A; Agyeman, Philipp; Aebi, Christoph; Berger, Christoph; Fellay, Jacques; Schlapbach, Luregn Jan (2016). Exome Sequencing Reveals Primary Immunodeficiencies in Children with Community-Acquired Pseudomonas aeruginosa Sepsis. Frontiers in immunology, 7, p. 357. Frontiers Research Foundation 10.3389/fimmu.2016.00357

Perkins, Molly R; Bartha, Istvan; Timmer, J Katherina; Liebner, Julia C; Wollinsky, David; Günthard, Huldrych F; Hauser, Christoph; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Telenti, Amalio; Douek, Daniel C; Fellay, Jacques (2015). The interplay between host genetic variation, viral replication and microbial translocation in untreated HIV-infected individuals. Journal of infectious diseases, 212(4), pp. 578-584. Oxford University Press 10.1093/infdis/jiv089

Regoes, Roland R; McLaren, Paul J; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Günthard, Huldrych F; Hoffmann, Matthias; Rauch, Andri; Telenti, Amalio; Fellay, Jacques (2014). Disentangling human tolerance and resistance against HIV. PLoS biology, 12(9), e1001951. Public Library of Science 10.1371/journal.pbio.1001951

Hasse, Barbara; Walker, A Sarah; Fehr, Jan; Furrer, Hansjakob; Hoffmann, Matthias; Battegay, Manuel; Calmy, Alexandra; Fellay, Jacques; Di Benedetto, Caroline; Weber, Rainer; Ledergerber, Bruno; Swiss HIV Cohort, Study (2014). Cotrimoxazole prophylaxis is associated with reduced risk of incident tuberculosis in participants in the Swiss HIV Cohort Study. Antimicrobial agents and chemotherapy, 58(4), pp. 2363-2368. American Society for Microbiology 10.1128/AAC.01868-13

Lane, Jérôme; McLaren, Paul J.; Dorrell, Lucy; Shianna, Kevin V.; Stemke, Amanda; Pelak, Kimberly; Moore, Stephen; Oldenburg, Johannes; Boehlen, Francoise; Alvarez-Roman, Maria Teresa; Angelillo-Scherrer, Anne; Bolton-Maggs, Paula H. B.; Brand, Brigit; Brown, Deborah; Chiang, Elaine; Cid-Haro, Ana Rosa; Clotet, Bonaventura; Collins, Peter; Colombo, Sara; Dalmau, Judith; ... (2013). A genome-wide association study of resistance to HIV infection in highly exposed uninfected individuals with hemophilia A. Human molecular genetics, 22(9), pp. 1903-1910. Oxford University Press 10.1093/hmg/ddt033

Pillai, Satish K; Abdel-Mohsen, Mohamed; Guatelli, John; Skasko, Mark; Monto, Alexander; Fujimoto, Katsuya; Yukl, Steven; Greene, Warner C; Kovari, Helen; Rauch, Andri; Fellay, Jacques; Battegay, Manuel; Hirschel, Bernard; Witteck, Andrea; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Wong, Joseph K; Swiss HIV Cohort Study, (2012). Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 109(8), pp. 3035-40. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.1111573109

di Iulio, Julia; Ciuffi, Angela; Fitzmaurice, Karen; Kelleher, Dermot; Rotger, Margalida; Fellay, Jacques; Martinez, Raquel; Pulit, Sara; Furrer, Hansjakob; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard; Barnes, Eleanor; Klenerman, Paul; Telenti, Amalio; Rauch, Andri; Swiss HIV Cohort Study, (2011). Estimating the net contribution of interleukin-28B variation to spontaneous hepatitis C virus clearance. Hepatology, 53(5), pp. 1446-54. Hoboken, N.J.: Wiley Interscience 10.1002/hep.24263

Rotger, Margalida; Dalmau, Judith; Rauch, Andri; McLaren, Paul; Bosinger, Steven E; Martinez, Raquel; Sandler, Netanya G; Roque, Annelys; Liebner, Julia; Battegay, Manuel; Bernasconi, Enos; Descombes, Patrick; Erkizia, Itziar; Fellay, Jacques; Hirschel, Bernard; Miró, Jose M; Palou, Eduard; Hoffmann, Matthias; Massanella, Marta; Blanco, Julià; ... (2011). Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque. Journal of clinical investigation, 121(6), pp. 2391-400. Ann Arbor, Mich.: American Society for Clinical Investigation 10.1172/JCI45235

Rauch, Andri; Fellay, Jacques (2011). Personalized hepatitis C therapy: opportunities and pitfalls. Expert review of molecular diagnostics, 11(2), pp. 127-9. London: Expert Reviews 10.1586/ERM.10.116

Colombo, Sara; Rauch, Andri; Rotger, Margalida; Fellay, Jacques; Martinez, Raquel; Fux, Christoph; Thurnheer, Christine; Günthard, Huldrych F; Goldstein, David B; Furrer, Hansjakob; Telenti, Amalio (2008). The HCP5 single-nucleotide polymorphism: a simple screening tool for prediction of hypersensitivity reaction to abacavir. Journal of infectious diseases, 198(6), pp. 864-7. Cary, N.C.: The University of Chicago Press 10.1086/591184

Keiser, Olivia; Fellay, Jacques; Opravil, Milos; Hirsch, Hans H; Hirschel, Bernard; Bernasconi, Enos; Vernazza, Pietro L; Rickenbach, Martin; Telenti, Amalio; Furrer, Hansjakob (2007). Adverse events to antiretrovirals in the Swiss HIV Cohort Study: effect on mortality and treatment modification. Antiviral therapy, 12(8), pp. 1157-64. London: International Medical Press