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Akshay, Akshay; Hashemi Gheinani, Ali; Besic, Mustafa; Braga, Sophie; Uldry, Anne-Christine; Heller, Manfred; Rehrauer, Hubert; Fournier, Catharine Aquino; Burkhard, Fiona C; Monastyrskaya, Katia (2024). De-obstruction of bladder outlet in humans reverses organ remodelling by normalizing the expression of key transcription factors. BMC urology, 24(33) BMC 10.1186/s12894-024-01417-8
Akshay, Akshay; Besic, Mustafa; Kuhn, Annette; Burkhard, Fiona C; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2024). Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome. International journal of molecular sciences, 25(3) MDPI 10.3390/ijms25031568
Akshay, Akshay; Katoch, Mitali; Shekarchizadeh, Navid; Abedi, Masoud; Sharma, Ankush; Burkhard, Fiona C; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2024). Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning-driven data analysis. GigaScience, 13, pp. 1-9. Oxford University Press 10.1093/gigascience/giad111
Akshay, Akshay; Katoch, Mitali; Shekarchizadeh, Navid; Abedi, Masoud; Sharma, Ankush; Burkhard, Fiona C.; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (4 July 2023). Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.07.04.546825
Akshay, Akshay; Katoch, Mitali; Abedi, Masoud; Besic, Mustafa; Shekarchizadeh, Navid; Burkhard, Fiona C.; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (28 June 2023). SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.06.28.533479
von Siebenthal, Michelle; Akshay, Akshay; Besic, Mustafa; Schneider, Marc P; Hashemi Gheinani, Ali; Burkhard, Fiona C; Monastyrskaya, Katia (2023). Molecular Characterization of Non-Neurogenic and Neurogenic Lower Urinary Tract Dysfunction (LUTD) in SCI-Induced and Partial Bladder Outlet Obstruction Mouse Models. International journal of molecular sciences, 24(3) MDPI 10.3390/ijms24032451
Akshay, Akshay; Katoch, Mitali; Abedi, Masoud; Shekarchizadeh, Navid; Besic, Mustafa; Burkhard, Fiona C; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2022). SpheroScan: a user-friendly deep learning tool for spheroid image analysis. GigaScience, 12 Oxford University Press 10.1093/gigascience/giad082
Akshay, Akshay; Abedi, Masoud; Shekarchizadeh, Navid; Burkhard, Fiona C; Katoch, Mitali; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2022). MLcps: machine learning cumulative performance score for classification problems. GigaScience, 12 Oxford University Press 10.1093/gigascience/giad108
von Siebenthal, Michelle; Schneider, Marc P.; Zheng, Shaokai; Wüthrich, Patrick Y.; Burkhard, Fiona C.; Monastyrskaya, Katia (2021). Effects of opioids and benzodiazepines on bladder function of awake restrained mice. American journal of clinical and experimental urology, 9(6), pp. 456-468. e-Century Publishing
Hashemi Gheinani, Ali; Akshay, Akshay; Besic, Mustafa; Kuhn, Annette; Keller, Irene; Bruggmann, Rémy; Rehrauer, Hubert; Adam, Rosalyn M; Burkhard, Fiona C.; Monastyrskaya, Katia (2021). Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis. BMC urology, 21(1), p. 172. BMC 10.1186/s12894-021-00934-0
von Siebenthal, Michelle; Besic, Mustafa; Hashemi Gheinani, Ali; Akshay, Akshay; Lizun-Platoni, Salomé; Kunz, Nadine; Burkhard, Fiona C.; Monastyrskaya, Katia (2021). Urinary miRNA profiles discriminate between obstruction-induced bladder dysfunction and healthy controls. Scientific reports, 11(1), p. 10204. Springer Nature 10.1038/s41598-021-89535-3
Schneider, Marc; Küffer, Michelle; Besic, Mustafa; Hashemi Gheinani, Ali; Vassella, Erik; Burkhard, Fiona C.; Monastyrskaya-Stäuber, Katia (5 May 2019). Towards non-invasive diagnosis of benign prostatic obstruction using urinary miRNAs. The journal of urology, 201(4S), e893-e894. American Urological Association 10.1097/01.JU.0000556840.49371.d1
Hashemi Gheinani, Ali; Burkhard, F.; Rehrauer, H.; Aquino Fournier, C.; Rémi, B.; Monastyrskaya, K. (15 March 2019). Molecular characterization of bladder pain syndrome identifies functional mRNA-microRNA regulatory modules. European Urology Supplements, 18(1), e718-e718. Elsevier 10.1016/S1569-9056(19)30527-5
Küffer, M.; Besic, M.; Hashemi Gheinani, A.; Vassella, E.; Schneider, M.; Burkhard, F. C.; Monastyrskaya, K. (15 March 2019). Urinary miRNA profiles discriminate between BPO patients and healthy controls. European Urology Supplements, 18(1), e715-e715. Elsevier 10.1016/S1569-9056(19)30525-1
Monastyrskaya, K.; Besic, M.; Hashemi Gheinani, A.; Burkhard, F. C. (15 March 2019). Dysregulation of phospholamban and beta 3-adrenergic receptor expression might lead to bladder detrusor overactivity via SERCA inhibition. European Urology Supplements, 18(1), e711-e711. Elsevier 10.1016/S1569-9056(19)30521-4
Koeck, Ivonne; Hashemi Gheinani, Ali; Baumgartner, Ulrich; Vassella, Erik; Bruggmann, Rémy; Burkhard, Fiona C.; Monastyrskaya, Katia (2018). Tumor Necrosis Factor-α Initiates miRNA-mRNA Signaling Cascades in Obstruction-Induced Bladder Dysfunction. The American journal of pathology, 188(8), pp. 1847-1864. Elsevier 10.1016/j.ajpath.2018.05.008
Hashemi Gheinani, Ali; Vögeli, Mike; Baumgartner, Ulrich; Vassella, Erik; Draeger, Annette; Burkhard, Fiona C.; Monastyrskaya-Stäuber, Katia (2018). Improved isolation strategies to increase the yield and purity of human urinary exosomes for biomarker discovery. Scientific Reports, 8(1), p. 3945. Nature Publishing Group 10.1038/s41598-018-22142-x
Baumgartner, Ulrich; Berger, Fabienne; Hashemi Gheinani, Ali; Burgener, Sabrina Sofia; Monastyrskaya-Stäuber, Katia; Vassella, Erik (2018). miR-19b enhances proliferation and apoptosis resistance via the EGFR signaling pathway by targeting PP2A and BIM in non-small cell lung cancer. Molecular cancer, 17(1), p. 44. BioMed Central 10.1186/s12943-018-0781-5
Monastyrskaya-Stäuber, Katia (2018). Functional Association between Regulatory RNAs and the Annexins. International journal of molecular sciences, 19(2) MDPI 10.3390/ijms19020591
Hashemi Gheinani, Ali; Köck, Ivonne; Vasquez, Evalynn; Baumgartner, Ulrich; Bigger-Allen, Alexander; Sack, Bryan S; Burkhard, Fiona C.; Adam, Rosalyn M; Monastyrskaya, Katia (2018). Concordant miRNA and mRNA expression profiles in humans and mice with bladder outlet obstruction. American journal of clinical and experimental urology, 6(6), pp. 219-233. e-Century Publishing
Vasquez, Evalynn; Cristofaro, Vivian; Lukianov, Stefan; Burkhard, Fiona C.; Hashemi Gheinani, Ali; Monastyrskaya-Stäuber, Katia; Bielenberg, Diane R; Sullivan, Maryrose P; Adam, Rosalyn M (2017). Deletion of neuropilin 2 enhances detrusor contractility following bladder outlet obstruction. JCI insight, 2(3), e90617. JCI Insight 10.1172/jci.insight.90617
Hashemi Gheinani, Ali; Kiss, Bernhard; Moltzahn, Felix Roman; Keller, Irene; Bruggmann, Rémy; Rehrauer, Hubert; Fournier, Catharine Aquino; Burkhard, Fiona C.; Monastyrskaya-Stäuber, Katia (2017). Characterization of miRNA-regulated networks, hubs of signaling, and biomarkers in obstruction-induced bladder dysfunction. JCI insight, 2(2), e89560. JCI Insight 10.1172/jci.insight.89560
Köck, Ivonne; Burkhard, Fiona C.; Monastyrskaya-Stäuber, Katia (2016). Activation of common signaling pathways during remodeling of the heart and the bladder. Biochemical pharmacology, 102, pp. 7-19. Elsevier 10.1016/j.bcp.2015.09.012
Hashemi Gheinani, Ali; Burkhard, Fiona C.; Rehrauer, Hubert; Aquino Fournier, Catharine; Monastyrskaya-Stäuber, Katia (2015). MicroRNA miR-199a-5p regulates smooth muscle cell proliferation and morphology by targeting Wnt2 signaling pathway. Journal of biological chemistry, 290(11), pp. 7067-7086. American Society for Biochemistry and Molecular Biology 10.1074/jbc.M114.618694
Monastyrskaya, Katia; Babiychuk, Eduard B.; Draeger, Annette; Burkhard, Fiona C. (2013). Down-Regulation of Annexin A1 in the Urothelium Decreases Cell Survival After Bacterial Toxin Exposure. Journal of urology, 190(1), pp. 325-333. Elsevier 10.1016/j.juro.2013.01.088
Hashemi Gheinani, Ali; Burkhard, Fiona C.; Monastyrskaya, Katia (2013). Deciphering microRNA code in pain and inflammation: lessons from bladder pain syndrome. Cellular and molecular life sciences, 70(20), pp. 3773-3789. Springer Basel 10.1007/s00018-013-1275-7
Babiychuk, E B; Monastyrskaya, K; Potez, S; Draeger, A (2011). Blebbing confers resistance against cell lysis. Cell death and differentiation, 18(1), pp. 80-9. Basingstoke: Nature Publishing Group 10.1038/cdd.2010.81
Draeger, Annette; Monastyrskaya-Stäuber, Katia; Babiychuk, Eduard B (2011). Plasma membrane repair and cellular damage control: the annexin survival kit. Biochemical pharmacology, 81(6), pp. 703-12. New York, N.Y.: Elsevier 10.1016/j.bcp.2010.12.027
Sanchez Freire, Veronica; Burkhard, Fiona C; Kessler, Thomas M; Kuhn, Annette; Draeger, Annette; Monastyrskaya, Katia (2010). MicroRNAs may mediate the down-regulation of neurokinin-1 receptor in chronic bladder pain syndrome. American journal of pathology, 176(1), pp. 288-303. New York, N.Y.: Elsevier 10.2353/ajpath.2010.090552
Draeger, Annette; Sanchez-Freire, Verónica; Monastyrskaya, Katia; Hoppeler, Hans; Mueller, Matthias; Breil, Fabio; Mohaupt, Markus G; Babiychuk, Eduard B (2010). Statin therapy and the expression of genes that regulate calcium homeostasis and membrane repair in skeletal muscle. American journal of pathology, 177(1), pp. 291-9. New York, N.Y.: Elsevier 10.2353/ajpath.2010.091140
Mohaupt, MG; Karas, RH; Babiychuk, EB; Sanchez-Freire, V; Monastyrskaya, K; Iyer, L; Hoppeler, H; Breil, F; Draeger, A (2009). Association between statin-associated myopathy and skeletal muscle damage. CMAJ, 181(1-2), E11-8. Ottawa: Canadian Medical Association 10.1503/cmaj.081785
Monastyrskaya, Katia; Babiychuk, Eduard B; Hostettler, Andrea; Rescher, Ursula; Draeger, Annette (2007). Annexins as intracellular calcium sensors. Cell calcium, 41(3), pp. 207-19. Amsterdam: Elsevier 10.1016/j.ceca.2006.06.008
Matschke, Katharina; Babiychuk, Eduard B; Monastyrskaya, Katia; Draeger, Annette (2006). Phenotypic conversion leads to structural and functional changes of smooth muscle sarcolemma. Experimental cell research, 312(18), pp. 3495-503. San Diego, Calif.: Elsevier 10.1016/j.yexcr.2006.07.012
Draeger, A; Monastyrskaya, K; Mohaupt, M; Hoppeler, H; Savolainen, H; Allemann, C; Babiychuk, E B (2006). Statin therapy induces ultrastructural damage in skeletal muscle in patients without myalgia. Journal of pathology, 210(1), pp. 94-102. Chichester: Wiley 10.1002/path.2018
Monastyrskaya, K.; Babiychuk, E. B.; Schittny, J. C.; Rescher, U.; Gerke, V.; Mannherz, H.-G.; Draeger, A. (2003). The expression levels of three raft-associated molecules in cultivated vascular cells are dependent on culture conditions. Cellular and molecular life sciences, 60(12), pp. 2702-2709. Birkhäuser-Verlag 10.1007/s00018-003-3307-1
