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Jakob, Manuel O.; Sánchez-Taltavull, Daniel; Yilmaz, Bahtiyar; Malinka, Thomas; Mooser, Catherine; Spari, Daniel; Salm, Lilian A.; Freiburghaus, Katrin; Pereyra, David; Hapfelmeier, Siegfried; Masoodi, Mojgan; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gomez de Agüero, Mercedes; Beldi, Guido (19 September 2019). Compartmentalization of intestinal bacteria by hepatic ILC3s prevents infections after surgery (bioRxiv). Cold Spring Harbor Laboratory 10.1101/773150
Gorecka-Mazur, Agnieszka; Krygowska-Wajs, Anna; Furgala, Agata; Li, Jiaqi; Misselwitz, Benjamin; Pietraszko, Wojciech; Kwinta, Borys; Yilmaz, Bahtiyar (2024). Associations between gut microbiota characteristics and non-motor symptoms following pharmacological and surgical treatments in Parkinson's disease patients. Neurogastroenterology and motility, 36(8), e14846. Blackwell Science 10.1111/nmo.14846
Wyss, Jacqueline; Raselli, Tina; Wyss, Annika; Telzerow, Anja; Rogler, Gerhard; Krupka, Niklas; Yilmaz, Bahtiyar; Schmidt, Thomas S B; Misselwitz, Benjamin (2024). Development of non-alcoholic steatohepatitis is associated with gut microbiota but not with oxysterol enzymes CH25H, EBI2, or CYP7B1 in mice. BMC microbiology, 24(1), p. 69. BioMed Central 10.1186/s12866-024-03195-7
Spari, Daniel; Zwicky, Simone N; Yilmaz, Bahtiyar; Salm, Lilian; Candinas, Daniel; Beldi, Guido (2023). Intestinal dysbiosis as an intraoperative predictor of septic complications: evidence from human surgical cohorts and preclinical models of peritoneal sepsis. Scientific Reports, 13(1), p. 22921. Nature Publishing Group 10.1038/s41598-023-49034-z
Jakob, Manuel O; Spari, Daniel; Sánchez Taltavull, Daniel; Salm, Lilian; Yilmaz, Bahtiyar; Doucet Ladevèze, Rémi; Mooser, Catherine; Pereyra, David; Ouyang, Ye; Schmidt, Theresa; Mattiola, Irene; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gasteiger, Georg; Klose, Christoph S N; Diefenbach, Andreas; Gomez de Agüero, Mercedes and Beldi, Guido (2023). ILC3s restrict the dissemination of intestinal bacteria to safeguard liver regeneration after surgery. Cell reports, 42(3), p. 112269. Cell Press 10.1016/j.celrep.2023.112269
Birchenough, George M H; Schroeder, Bjoern O; Sharba, Sinan; Arike, Liisa; Recktenwald, Christian V; Puértolas-Balint, Fabiola; Subramani, Mahadevan V; Hansson, Karl T; Yilmaz, Bahtiyar; Lindén, Sara K; Bäckhed, Fredrik; Hansson, Gunnar C (2023). Muc2-dependent microbial colonization of the jejunal mucus layer is diet sensitive and confers local resistance to enteric pathogen infection. Cell reports, 42(2), p. 112084. Cell Press 10.1016/j.celrep.2023.112084
Papotto, Pedro H; Yilmaz, Bahtiyar; Pimenta, Gonçalo; Mensurado, Sofia; Cunha, Carolina; Fiala, Gina J; Gomes da Costa, Daniel; Gonçalves-Sousa, Natacha; Chan, Brian H K; Blankenhaus, Birte; Domingues, Rita G; Carvalho, Tânia; Hepworth, Matthew R; Macpherson, Andrew J; Allen, Judith E; Silva-Santos, Bruno (2023). Maternal γδ T cells shape offspring pulmonary type 2 immunity in a microbiota-dependent manner. Cell reports, 42(2), p. 112074. Cell Press 10.1016/j.celrep.2023.112074
Chandiwana, Panashe; Munjoma, Privilege Tendai; Mazhandu, Arthur John; Li, Jiaqi; Bärtschi, Isabel; Wyss, Jacqueline; Jordi, Sebastian Bruno Ulrich; Mazengera, Lovemore Ronald; Yilmaz, Bahtiyar; Misselwitz, Benjamin; Duri, Kerina (2023). Antenatal gut microbiome profiles and effect on pregnancy outcome in HIV infected and HIV uninfected women in a resource limited setting. BMC microbiology, 23(1), p. 4. BioMed Central 10.1186/s12866-022-02747-z
Remund, Barblin; Yilmaz, Bahtiyar; Sokollik, Christiane (2023). D-Lactate: Implications for Gastrointestinal Diseases. Children, 10(6), p. 945. MDPI 10.3390/children10060945
Marchukov, Dmitrij; Li, Jiaqi; Juillerat, Pascal; Misselwitz, Benjamin; Yilmaz, Bahtiyar (2023). Benchmarking microbial DNA enrichment protocols from human intestinal biopsies. Frontiers in genetics, 14(1184473), p. 1184473. Frontiers Media SA 10.3389/fgene.2023.1184473
Yilmaz, Bahtiyar; Fuhrer, Tobias; Morgenthaler, Deborah; Krupka, Niklas; Wang, Daoming; Spari, Daniel; Candinas, Daniel; Misselwitz, Benjamin; Beldi, Guido; Sauer, Uwe; Macpherson, Andrew J (2022). Plasticity of the adult human small intestinal stoma microbiota. Cell host & microbe, 30(12), 1773-1787.e6. Cell Press 10.1016/j.chom.2022.10.002
Wyss, Jacqueline; Raselli, Tina; Wyss, Annika; Telzerov, Anja; Rogler, Gerhard; Krupka, Niklas; Yilmaz, Bahtiyar; Schmidt, Thomas SB; Misselwitz, Benjamin (2 December 2022). Development of non-alcoholic steatohepatitis is associated with gut microbiota but not oxysterol synthesis (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.12.02.518833
Jordi, Sebastian Bruno Ulrich; Lang, Brian Matthew; Wyss, Jacqueline; Auschra, Bianca; Yilmaz, Bahtiyar; Krupka, Niklas; Greuter, Thomas; Schreiner, Philipp; Biedermann, Luc; Preisig, Martin; von Känel, Roland; Rogler, Gerhard; Begré, Stefan; Misselwitz, Benjamin (2022). The personality traits activity, self-reproach, and negative affect jointly predict clinical recurrence, depressive symptoms, and low quality of life in inflammatory bowel disease patients. Journal of gastroenterology, 57(11), pp. 848-866. Springer 10.1007/s00535-022-01902-7
Schneider, Romano; Kraljević, Marko; Peterli, Ralph; Rohm, Theresa V; Bosch, Angela J T; Low, Andy J Y; Keller, Lena; AlAsfoor, Shefaa; Häfliger, Simon; Yilmaz, Bahtiyar; Peterson, Caspar J; Lazaridis, Ioannis I; Vonaesch, Pascale; Delko, Tarik; Cavelti-Weder, Claudia (2022). Roux-en-Y gastric bypass with a long versus a short biliopancreatic limb improves weight loss and glycemic control in obese mice. Surgery for obesity and related diseases, 18(11), pp. 1286-1297. Elsevier 10.1016/j.soard.2022.06.286
Sudworth, Amanda; Segers, Filip M; Yilmaz, Bahtiyar; Guslund, Naomi C; Macpherson, Andrew J; Dissen, Erik; Qiao, Shuo-Wang; Inngjerdingen, Marit (2022). Innate lymphoid cell characterization in the rat and their correlation to gut commensal microbes. European journal of immunology, 52(5), pp. 717-729. Wiley 10.1002/eji.202149639
Rohm, Theresa V; Keller, Lena; Bosch, Angela J T; AlAsfoor, Shefaa; Baumann, Zora; Thomas, Amandine; Wiedemann, Sophia J; Steiger, Laura; Dalmas, Elise; Wehner, Josua; Rachid, Leila; Mooser, Catherine; Yilmaz, Bahtiyar; Fernandez Trigo, Nerea; Jauch, Annaise J; Wueest, Stephan; Konrad, Daniel; Henri, Sandrine; Niess, Jan H; Hruz, Petr; ... (2022). Targeting colonic macrophages improves glycemic control in high-fat diet-induced obesity. Communications biology, 5(1), p. 370. Springer Nature 10.1038/s42003-022-03305-z
Macpherson, Andrew J; Yilmaz, Bahtiyar (2022). Microbial drivers of DSS variability. Nature microbiology, 7(4), pp. 478-479. Springer Nature 10.1038/s41564-022-01097-w
Mossad, Omar; Batut, Bérénice; Yilmaz, Bahtiyar; Dokalis, Nikolaos; Mezö, Charlotte; Nent, Elisa; Nabavi, Lara Susann; Mayer, Melanie; Maron, Feres José Mocayar; Buescher, Joerg M; Gomez de Agüero, Mercedes; Szalay, Antal; Lämmermann, Tim; Macpherson, Andrew J; Ganal-Vonarburg, Stephanie C; Backofen, Rolf; Erny, Daniel; Prinz, Marco; Blank, Thomas (2022). Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine. Nature neuroscience, 25(3), pp. 295-305. Nature America 10.1038/s41593-022-01027-3
Fregolente, L.G.; Warncke, J.D.; van der Meer, J.; Schmidt, M.; Khatami, R.; Macpherson, A.J.; Yilmaz, B.; Bassetti, C.L.A. (2022). SPHYNCS: Gut microbiota composition is different in Narcolepsy type 1 and Narcolepsy Borderland. Sleep medicine, 100, S167. Elsevier 10.1016/j.sleep.2022.05.452
Chandiwana, Panashe; Munjoma, Privilege T; Mazhandu, Arthur J; Mazengera, Lovemore R; Misselwitz, Benjamin; Jordi, Sebastian B U; Yilmaz, Bahtiyar; Duri, Kerina (2022). Antenatal and postpartum immunological markers levels in women with HIV infection and malnutrition in a low resource setting: A pilot study. European journal of inflammation, 20, 1721727X2211392. Sage 10.1177/1721727X221139261
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Murugan, Shaira; Hamley, Jonathan I. D.; Rollenske, Tim; Ganal-Vonarburg, Stephanie C.; Büchi, Isabel; Keogh, Adrian; Li, Hai; Salm, Lilian; Spari, Daniel; Yilmaz, Bahtiyar; Zimmermann, Jakob; Gerfin, Michael; Roldan, Edgar; Beldi, Guido (2021). Regular testing of asymptomatic healthcare workers identifies cost-efficient SARS-CoV-2 preventive measures. PLoS ONE, 16(11), e0258700. Public Library of Science 10.1371/journal.pone.0258700
Dietmann, Anelia; Wenzel, Elena; van der Meer, Julia; Ringli, Maya; Warncke, Jan D; Edwards, Ellen; Schmidt, Markus H; Bernasconi, Corrado A; Nirkko, Arto; Strub, Mathias; Miano, Silvia; Manconi, Mauro; Acker, Jens; von Manitius, Sigrid; Baumann, Christian R; Valko, Philip O; Yilmaz, Bahtiyar; Brunner, Andreas-David; Tzovara, Athina; Zhang, Zhongxing; ... (2021). The Swiss Primary Hypersomnolence and Narcolepsy Cohort study (SPHYNCS): Study protocol for a prospective, multicentre cohort observational study. Journal of sleep research, 30(5), e13296. Wiley 10.1111/jsr.13296
Yilmaz, Bahtiyar; Ruckstuhl, Lisa; Müllhaupt, Beat; Magenta, Lorenzo; Kuster, Melanie Harrer; Clerc, Olivier; Torgler, Ralph; Semmo, Nasser (2021). Pilot Sub-Study of the Effect of Hepatitis C Cure by Glecaprevir/Pibrentasvir on the Gut Microbiome of Patients with Chronic Hepatitis C Genotypes 1 to 6 in the Mythen Study. Pharmaceuticals, 14(9) MDPI 10.3390/ph14090931
Papotto, Pedro H; Yilmaz, Bahtiyar; Silva-Santos, Bruno (2021). Crosstalk between γδ T cells and the microbiota. Nature microbiology, 6(9), pp. 1110-1117. Springer Nature 10.1038/s41564-021-00948-2
Denoth, Luisa; Juillerat, Pascal; Kremer, Andreas E; Rogler, Gerhard; Scharl, Michael; Yilmaz, Bahtiyar; Bluemel, Sena (2021). Modulation of the Mucosa-Associated Microbiome Linked to the PTPN2 Risk Gene in Patients with Primary Sclerosing Cholangitis and Ulcerative Colitis. Microorganisms, 9(8) MDPI 10.3390/microorganisms9081752
Caparrós, Esther; Wiest, Reiner; Scharl, Michael; Rogler, Gerhard; Gutiérrez Casbas, Ana; Yilmaz, Bahtiyar; Wawrzyniak, Marcin; Francés, Rubén (2021). Dysbiotic microbiota interactions in Crohn's disease. Gut microbes, 13(1), p. 1949096. Landes Bioscience 10.1080/19490976.2021.1949096
Zhang, Yawen; Feng, Lijun; Wang, Xin; Fox, Mark; Luo, Liang; Du, Lijun; Chen, Binrui; Chen, Xiaoli; He, Huiqin; Zhu, Shuwen; Hu, Zhefang; Chen, Shujie; Long, Yanqin; Zhu, Yubin; Xu, Li; Deng, Yanyong; Misselwitz, Benjamin; Lang, Brian M; Yilmaz, Bahtiyar; Kim, John J; ... (2021). Low fermentable oligosaccharides, disaccharides, monosaccharides, and polyols diet compared with traditional dietary advice for diarrhea-predominant irritable bowel syndrome: a parallel-group, randomized controlled trial with analysis of clinical and microbiological factors associated with patient outcomes. The American journal of clinical nutrition, 113(6), pp. 1531-1545. Oxford University Press 10.1093/ajcn/nqab005
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Juanola, Oriol; Hassan, Mohsin; Kumar, Pavitra; Yilmaz, Bahtiyar; Keller, Irene; Simillion, Cedric; Engelmann, Cornelius; Tacke, Frank; Dufour, Jean-François; De Gottardi, Andrea; Moghadamrad, Sheida (2021). Intestinal microbiota drives cholestasis-induced specific hepatic gene expression patterns. Gut microbes, 13(1), pp. 1-20. Taylor & Francis Group 10.1080/19490976.2021.1911534
Singh, Sumnima; Thompson, Jessica A; Yilmaz, Bahtiyar; Li, Hai; Weis, Sebastian; Sobral, Daniel; Truglio, Mauro; Aires da Silva, Frederico; Aguiar, Sandra; Carlos, Ana Rita; Rebelo, Sofia; Cardoso, Silvia; Gjini, Erida; Nuñez, Gabriel; Soares, Miguel P (2021). Loss of α-gal during primate evolution enhanced antibody-effector function and resistance to bacterial sepsis. Cell host & microbe, 29(3), 347-361.e12. Cell Press 10.1016/j.chom.2020.12.017
Rogler, Gerhard; Scharl, Michael; Spalinger, Marianne; Yilmaz, Bahtiyar; Zaugg, Michael; Hersberger, Martin; Schreiner, Philipp; Biedermann, Luc; Herfarth, Hans (2021). Diet and Inflammatory Bowel Disease: What Quality Standards Should Be Applied in Clinical and Laboratory Studies? Molecular nutrition & food research, 65(5), e2000514. Wiley 10.1002/mnfr.202000514
Katsidzira, Leolin; Mudombi, Wisdom F; Makunike-Mutasa, Rudo; Yilmaz, Bahtiyar; Blank, Annika; Rogler, Gerhard; Macpherson, Andrew; Vavricka, Stephan; Gangaidzo, Innocent; Misselwitz, Benjamin (2020). Inflammatory bowel disease in sub-Saharan Africa: a protocol of a prospective registry with a nested case-control study. BMJ open, 10(12), e039456. BMJ Publishing Group 10.1136/bmjopen-2020-039456
Li, Hai; Limenitakis, Julien Periclis Jean; Greiff, Victor; Yilmaz, Bahtiyar; Schären, Olivier Pascal; Urbaniak, Camilla; Zünd, Mirjam; Lawson, Melissa; Young, Ian D.; Rupp, Sandra; Heikenwälder, Mathias; McCoy, Kathleen; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2020). Mucosal or systemic microbiota exposures shape the B cell repertoire. Nature, 584(7820), pp. 274-278. Springer Nature 10.1038/s41586-020-2564-6
Humbel, Fabienne; Rieder Harrell, Jessica; Franc, Yannick; Juillerat, Pascal; Scharl, Michael; Misselwitz, Benjamin; Schreiner, Philipp; Begré, Stefan; Rogler, Gerhard; von Känel, Roland; Yilmaz, Bahtiyar; Biedermann, Luc (2020). Association of Alterations in Intestinal Microbiota With Impaired Psychological Function in Patients With Inflammatory Bowel Diseases in Remission. Clinical gastroenterology and hepatology, 18(9), 2019-2029.e11. Elsevier 10.1016/j.cgh.2019.09.022
Mezö, Charlotte; Dokalis, Nikolaos; Mossad, Omar; Staszewski, Ori; Neuber, Jana; Yilmaz, Bahtiyar; Schnepf, Daniel; Gomez de Agüero, Mercedes; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J.; Meyer-Luehmann, Melanie; Staeheli, Peter; Blank, Thomas; Prinz, Marco; Erny, Daniel (2020). Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer's disease. Acta neuropathologica communications, 8(1), p. 119. BioMed Central 10.1186/s40478-020-00988-5
Sorribas, Marcel; Jakob, Manuel O.; Yilmaz, Bahtiyar; Li, Hai; Stutz, David; Noser, Yannik; De Gottardi, Andrea; Moghadamrad, Sheida; Hassan, Mohsin; Albillos, Agustin; Francés, Ruben; Juanola, Oriol; Spadoni, Ilaria; Rescigno, Maria; Wiest, Reiner (2019). FXR modulates the gut-vascular barrier by regulating the entry sites for bacterial translocation in experimental cirrhosis. Journal of hepatology, 71(6), pp. 1126-1140. Elsevier 10.1016/j.jhep.2019.06.017
Schreiner, Philipp; Yilmaz, Bahtiyar; Rossel, Jean-Benoît; Franc, Yannick; Misselwitz, Benjamin; Scharl, Michael; Zeitz, Jonas; Frei, Pascal; Greuter, Thomas; Vavricka, Stephan R; Pittet, Valérie; Siebenhüner, Alexander; Juillerat, Pascal; von Känel, Roland; Macpherson, Andrew J; Rogler, Gerhard; Biedermann, Luc (2019). Vegetarian or gluten-free diets in patients with inflammatory bowel disease are associated with lower psychological well-being and a different gut microbiota, but no beneficial effects on the course of the disease. United european gastroenterology journal, 7(6), pp. 767-781. Sage 10.1177/2050640619841249
Yilmaz, Bahtiyar; Juillerat, Pascal; Øyås, Ove; Ramon, Charlotte; Bravo, Francisco Damian; Franc, Yannick; Fournier, Nicolas; Michetti, Pierre; Mueller, Christoph; Geuking, Markus; Pittet, Valerie E H; Maillard, Michel H; Rogler, Gerhard; Wiest, Reiner; Stelling, Jörg; Macpherson, Andrew J. (2019). Publisher Correction: Microbial network disturbances in relapsing refractory Crohn's disease. Nature medicine, 25(4), p. 701. Springer Nature 10.1038/s41591-019-0411-9
Yilmaz, Bahtiyar; Juillerat, Pascal; Øyås, Ove; Ramon, Charlotte; Bravo, Francisco Damian; Franc, Yannick; Fournier, Nicolas; Michetti, Pierre; Müller, Christoph; Geuking, Markus; Pittet, Valerie E H; Maillard, Michel H; Rogler, Gerhard; Wiest, Reiner; Stelling, Jörg; Macpherson, Andrew J. (2019). Microbial network disturbances in relapsing refractory Crohn's disease. Nature medicine, 25(2), pp. 323-336. Nature Publishing Group 10.1038/s41591-018-0308-z
Yilmaz, Bahtiyar; Li, Hai (2018). Gut Microbiota and Iron: The Crucial Actors in Health and Disease. Pharmaceuticals, 11(4) MDPI 10.3390/ph11040098
Uchimura, Yasuhiro; Fuhrer, Tobias; Li, Hai; Lawson, Melissa A.; Zimmermann, Michael; Yilmaz, Bahtiyar; Zindel, Joel; Ronchi, Francesca; Sorribas Olivera, Marcel; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Gomez de Agüero, Mercedes; McCoy, Kathleen D.; Sauer, Uwe; Macpherson, Andrew J. (2018). Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response. Immunity, 49(3), 545-559.e5. Cell Press 10.1016/j.immuni.2018.08.004
Yilmaz, Bahtiyar; Schibli, Susanne; Macpherson, Andrew; Sokollik, Christiane (2018). D-lactic Acidosis: Successful Suppression of D-lactate-Producing Lactobacillus by Probiotics. Pediatrics, 142(3) American Academy of Pediatrics 10.1542/peds.2018-0337
Macpherson, Andrew; Yilmaz, Bahtiyar (2018). Antibodies that lte our intestinal microbes. Science immunology, 3(23) American Association for the Advancement of Science 10.1126/sciimmunol.aat4037
Macpherson, Andrew; Yilmaz, Bahtiyar; Limenitakis, Julien Periclis Jean; Ganal-Vonarburg, Stephanie (2018). IgA Function in Relation to the Intestinal Microbiota. Annual review of immunology, 36, pp. 359-381. Annual Reviews 10.1146/annurev-immunol-042617-053238
Yilmaz, Bahtiyar; Spalinger, Marianne R; Biedermann, Luc; Franc, Yannick; Fournier, Nicolas; Rossel, Jean-Benoit; Juillerat, Pascal; Rogler, Gerhard; Macpherson, Andrew J.; Scharl, Michael (2018). The presence of genetic risk variants within PTPN2 and PTPN22 is associated with intestinal microbiota alterations in Swiss IBD cohort patients. PLoS ONE, 13(7), e0199664. Public Library of Science 10.1371/journal.pone.0199664
