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Colomé, Núria; Abian, Joaquín; Aloria, Kerman; Arizmendi, Jesús M; Barceló-Batllori, Silvia; Braga-Lagache, Sophie; Burlet-Schiltz, Odile; Carrascal, Montse; Casal, J Ignacio; Chicano-Gálvez, Eduard; Chiva, Cristina; Clemente, Luis Felipe; Elortza, Felix; Estanyol, Josep M; Fernandez-Irigoyen, Joaquín; Fernández-Puente, Patricia; Fidalgo, María José; Froment, Carine; Fuentes, Manuel; Fuentes-Almagro, Carlos; ... (2022). Multi-laboratory experiment PME11 for the standardization of phosphoproteome analysis. Journal of proteomics, 251, p. 104409. Elsevier 10.1016/j.jprot.2021.104409
Zysset-Burri, Denise C.; Schlegel, Irina; Lincke, Joel-Benjamin; Jaggi, Damian; Keller, Irene; Heller, Manfred; Braga Lagache, Sophie; Wolf, Sebastian; Zinkernagel, Martin S. (2021). Understanding the Interactions Between the Ocular Surface Microbiome and the Tear Proteome. Investigative ophthalmology & visual science, 62(10), p. 8. Association for Research in Vision and Ophthalmology 10.1167/iovs.62.10.8
Hallal, Mahmoud; Braga-Lagache, Sophie; Jankovic, Jovana; Simillion, Cedric; Bruggmann, Rémy; Uldry, Anne-Christine; Allam, Ramanjaneyulu; Heller, Manfred; Bonadies, Nicolas (2021). Inference of kinase-signaling networks in human myeloid cell line models by Phosphoproteomics using kinase activity enrichment analysis (KAEA). BMC cancer, 21(1), p. 789. BioMed Central 10.1186/s12885-021-08479-z
Müller, Joachim; Heller, Manfred; Uldry, Anne-Christine; Braga, Sophie; Müller, Norbert (2021). Nitroreductase Activites in Giardia lamblia: ORF 17150 Encodes a Quinone Reductase with Nitroreductase Activity. Pathogens, 10(2), p. 129. MDPI AG 10.3390/pathogens10020129
Cyrta, Joanna; Augspach, Anke; De Filippo, Maria Rosaria; Prandi, Davide; Thienger, Phillip; Benelli, Matteo; Cooley, Victoria; Bareja, Rohan; Wilkes, David; Chae, Sung-Suk; Cavaliere, Paola; Dephoure, Noah; Uldry, Anne-Christine; Braga Lagache, Sophie; Roma, Luca; Cohen, Sandra; Jaquet, Muriel; Brandt, Laura P.; Alshalalfa, Mohammed; Puca, Loredana; ... (2020). Role of specialized composition of SWI/SNF complexes in prostate cancer lineage plasticity. Nature Communications, 11(1), p. 5549. Springer Nature 10.1038/s41467-020-19328-1
Müller, Joachim; Braga, Sophie; Uldry, Anne-Christine; Heller, Manfred; Müller, Norbert (2020). Comparative proteomics of three Giardia lamblia strains: investigation of antigenic variation in the post-genomic era. Parasitology, 147(9), pp. 1008-1018. Cambridge University Press 10.1017/S0031182020000657
Cosgrove, Jason; Novkovic, Mario; Albrecht, Stefan; Pikor, Natalia B; Zhou, Zhaoukun; Onder, Lucas; Mörbe, Urs; Cupovic, Jovana; Miller, Helen; Alden, Kieran; Thuery, Anne; O'Toole, Peter; Pinter, Rita; Jarrett, Simon; Taylor, Emily; Venetz, Daniel; Heller, Manfred; Uguccioni, Mariagrazia; Legler, Daniel F; Lacey, Charles J; ... (2020). B cell zone reticular cell microenvironments shape CXCL13 gradient formation. Nature Communications, 11(1), p. 3677. Springer Nature 10.1038/s41467-020-17135-2
Duman, Mert; Vaquié, Adrien; Nocera, Gianluigi; Heller, Manfred; Stumpe, Michael; Siva Sankar, Devanarayanan; Dengjel, Jörn; Meijer, Dies; Yamaguchi, Teppei; Matthias, Patrick; Zeis, Thomas; Schaeren-Wiemers, Nicole; Hayoz, Antoinette; Ruff, Sophie; Jacob, Claire (2020). EEF1A1 deacetylation enables transcriptional activation of remyelination. Nature Communications, 11(1), p. 3420. Springer Nature 10.1038/s41467-020-17243-z
Winzer, Pablo; Müller, Joachim; Imhof, Dennis; Ritler, Dominic; Uldry, Anne-Christine; Braga-Lagache, Sophie; Heller, Manfred; Ojo, Kayode K; Van Voorhis, Wesley C; Ortega-Mora, Luis-Miguel; Hemphill, Andrew (2020). Neospora caninum: Differential Proteome of Multinucleated Complexes Induced by the Bumped Kinase Inhibitor BKI-1294. Microorganisms, 8(6) MDPI 10.3390/microorganisms8060801
Briand, Manon L; Gebleux, Remy; Richina, Federica; Correro, M Rita; Grether, Yasmin; Dudal, Yves; Braga-Lagache, Sophie; Heller, Manfred; Beerli, Roger R; Grawunder, Ulf; Corvini, Philippe F-X; Shahgaldian, Patrick (2020). Partially shielded enzymes capable of processing large protein substrates. Chemical communications, 56(38), pp. 5170-5173. Royal Society of Chemistry 10.1039/d0cc01150a
Taboada, Hermenegildo; Meneses, Niurka; Dunn, Michael F; Vargas-Lagunas, Carmen; Buchs, Natasha; Castro-Mondragón, Jaime A; Heller, Manfred; Encarnación, Sergio (2019). Proteins in the periplasmic space and outer membrane vesicles of Rhizobium etli CE3 grown in minimal medium are largely distinct and change with growth phase. Microbiology, 165(6), pp. 638-650. Society for General Microbiology 10.1099/mic.0.000720
Pierog, Jaroslaw Stanislaw; Fytianos, Kleanthis; Tamò, Luca Giuseppe Athos; Simillion, Cedric André Marie; Taddeo, Adriano; Kocher, Gregor; Gugger, Mathias; Grodzki, Tomasz; Heller, Manfred; Blank, Fabian; Geiser, Thomas; Schmid, Ralph; Gazdhar, Amiq (2019). Stem cell secretome attenuates acute rejection in rat lung allotransplant. Interactive cardiovascular and thoracic surgery, 28(5), pp. 812-818. Oxford University Press 10.1093/icvts/ivy306
Nicholson, Pamela; Furrer, Julia; Hässig, Michael; Strauss, Christian; Heller, Manfred; Braga, Sophie; Frey, Joachim (2019). Production of neutralizing antibodies against the secreted Clostridium chauvoei toxin A (CctA) upon blackleg vaccination. Anaerobe, 56, pp. 78-87. Elsevier 10.1016/j.anaerobe.2019.02.011
Brunner, Magdalena; Rüfenacht, Silvia; Bauer, Anina; Erpel, Susanne; Buchs, Natasha; Braga, Sophie Marie-Pierre; Heller, Manfred; Leeb, Tosso; Jagannathan, Vidya; Wiener, Dominique Judith; Welle, Monika Maria (2019). Bald thigh syndrome in sighthounds - Revisiting the cause of a well-known disease. PLoS ONE, 14(2), e0212645. Public Library of Science 10.1371/journal.pone.0212645
V'kovski, Philip; Gerber, Markus; Kelly, Jenna Nicole; Pfänder, Stephanie; Ebert, Nadine; Braga Lagache, Sophie; Simillion, Cedric; Portmann, Jasmine; Stalder, Hanspeter; Gaschen, Véronique; Bruggmann, Rémy; Stoffel, Michael Hubert; Heller, Manfred; Dijkman, Ronald; Thiel, Volker Earl (2019). Determination of host proteins composing the microenvironment of coronavirus replicase complexes by proximity-labeling. eLife, 8 eLife Sciences Publications 10.7554/eLife.42037
Jack, Thomas; Leuenberger, Michele; Ruepp, Marc-David; Vernekar, Sanjeev Kumar V; Thompson, Andrew James; Braga-Lagache, Sophie; Heller, Manfred; Lochner, Martin (2019). Mapping the Orthosteric Binding Site of the Human 5-HT3 Receptor Using Photo-crosslinking Antagonists. ACS chemical neuroscience, 10(1), pp. 438-450. American Chemical Society 10.1021/acschemneuro.8b00327
Gazdhar, Amiq; Ravikumar, Priya; Pastor, Johanne; Heller, Manfred; Ye, Jianfeng; Zhang, Jianning; Moe, Orson W; Geiser, Thomas; Hsia, Connie C W (2018). Alpha-Klotho Enrichment in Induced Pluripotent Stem Cell Secretome Contributes to Antioxidative Protection in Acute Lung Injury. Stem cells, 36(4), pp. 616-625. AlphaMed Press 10.1002/stem.2752
Langenegger, Nicolas; Koua, Dominique; Schürch, Stefan; Heller, Manfred; Nentwig, Wolfgang; Kuhn-Nentwig, Lucia (2018). Identification of a precursor processing protease from the spider Cupiennius salei essential for venom neurotoxin maturation. Journal of biological chemistry, 293(6), pp. 2079-2090. American Society for Biochemistry and Molecular Biology 10.1074/jbc.M117.810911
Buchs, Natasha; Braga, Sophie Marie-Pierre; Uldry, Anne-Christine; Brodard, Justine; Debonneville, Christophe; Reynard, Jean-Sébastien; Heller, Manfred (2018). Absolute Quantification of in Grapevine Leaf and Petiole Tissues by Proteomics. Frontiers in Plant Science, 9, p. 1735. Frontiers 10.3389/fpls.2018.01735
Meneses Moreno, Niurka; Taboada, Hermenegildo; Dunn, Michael F; Vargas, María Del Carmen; Buchs, Natasha; Heller, Manfred; Encarnación, Sergio (2017). The naringenin-induced exoproteome of Rhizobium etli CE3. Archives of microbiology, 199(5), pp. 737-755. Springer 10.1007/s00203-017-1351-8
Brügger, Valérie; Duman, Mert; Bochud, Maëlle; Münger, Emmanuelle; Heller, Manfred; Ruff, Sophie; Jacob, Claire (2017). Delaying histone deacetylase response to injury accelerates conversion into repair Schwann cells and nerve regeneration. Nature communications, 8(14272), p. 14272. Nature Publishing Group 10.1038/ncomms14272
Braga, Sophie Marie-Pierre; Buchs, Natasha; Iacovache, Mircea Ioan; Zuber, Benoît; Jackson, Christopher; Heller, Manfred (2016). Robust Label-free, Quantitative Profiling of Circulating Plasma Microparticle (MP) Associated Proteins. Molecular & cellular proteomics, 15(12), pp. 3640-3652. American Society for Biochemistry and Molecular Biology 10.1074/mcp.M116.060491
Ruegsegger, Céline; Maharjan, Niran; Goswami, Anand; Filézac de l’Etang, Audrey; Weis, Joachim; Troost, Dirk; Heller, Manfred; Gut, Heinz; Saxena, Smita (2016). Aberrant association of misfolded SOD1 with Na+/K+ATPase-α3 impairs its activity and contributes to motor neuron vulnerability in ALS. Acta neuropathologica, 131(3), pp. 427-451. Springer 10.1007/s00401-015-1510-4
Petrovic, Marian; Simillion, Cedric André Marie; Kruzliak, Peter; Sabo, Jan; Heller, Manfred (2015). Doxorubicin Affects Expression of Proteins of Neuronal Pathways in MCF-7 Breast Cancer Cells. Cancer genomics & proteomics, 12(6), pp. 347-358. International Institute of Anticancer Research
Schumann Burkard, Gabriela; Käser, Sandro; de Araújo, Patricia; Schimanski, Bernd; Naguleswaran, Arunasalam; Knüsel, Sebastian; Heller, Manfred; Roditi, Isabel (2013). Nucleolar proteins regulate stage-specific gene expression and ribosomal RNA maturation in Trypanosoma brucei. Molecular microbiology, 88(4), pp. 827-840. Blackwell Science 10.1111/mmi.12227
Vanden Bergh, Philippe; Heller, Manfred; Braga-Lagache, Sophie; Frey, Joachim (2013). The Aeromonas salmonicida subsp. salmonicida exoproteome: global analysis, moonlighting proteins and putative antigens for vaccination against furunculosis. Proteome Science, 11(1), p. 44. BioMed Central 10.1186/1477-5956-11-44
Vanden Bergh, Philippe; Heller, Manfred; Braga-Lagache, Sophie; Frey, Joachim (2013). The Aeromonas salmonicida subsp. salmonicida exoproteome: determination of the complete repertoire of Type-Three Secretion System effectors and identification of other virulence factors. Proteome Science, 11(1), p. 42. BioMed Central 10.1186/1477-5956-11-42
Gunasekera, Kapila; Wüthrich, Daniel; Braga-Lagache, Sophie; Heller, Manfred; Ochsenreiter, Torsten (2012). Proteome remodelling during development from blood to insect-form Trypanosoma brucei quantified by SILAC and mass spectrometry. BMC Genomics, 13, p. 556. London: BioMed Central 10.1186/1471-2164-13-556
Al Kaabi, Ali; Traupe, Tobias; Stutz, Monika; Buchs, Natasha; Heller, Manfred (2012). Cause or effect of arteriogenesis: compositional alterations of microparticles from CAD patients undergoing external counterpulsation therapy. PLoS ONE, 7(10), e46822. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0046822
Eltschinger, Sandra; Greganova, Eva; Heller, Manfred; Bütikofer, Peter; Altmann, Michael (2012). Eukaryotic translation elongation factor 1A (eEF1A) domain I from S. cerevisiae is required but not sufficient for inter-species complementation. PLoS ONE, 7(7), e42338. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0042338
Mani, Jan; Güttinger, Andreas; Schimanski, Bernd; Heller, Manfred; Acosta-Serrano, Alvaro; Pescher, Pascale; Späth, Gerald; Roditi, Isabel (2011). Alba-domain proteins of Trypanosoma brucei are cytoplasmic RNA-binding proteins that interact with the translation machinery. PLoS ONE, 6(7), e22463. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0022463
Vincent, Bruno; Kaeslin, Martha; Roth, Thomas; Heller, Manfred; Poulain, Julie; Cousserans, François; Schaller, Johann; Poirié, Marylène; Lanzrein, Beatrice Constance; Drezen, Jean-Michel; Moreau, Sébastien JM (2010). The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach. BMC Genomics, 11(1), p. 693. London: BioMed Central 10.1186/1471-2164-11-693
Wetterwald, C; Roth, T; Kaeslin, M; Annaheim, M; Wespi, G; Heller, M; Mäser, P; Roditi, I; Pfister-Wilhelm, R; Bézier, A; Gyapay, G; Drezen, JM; Lanzrein, B (2010). Identification of bracovirus particle proteins and analysis of their transcript levels at the stage of virion formation. Journal of general virology, 91(10), pp. 2610-2619. Reading: Society for General Microbiology 10.1099/vir.0.022699-0
Greganova, E; Heller, M; Bütikofer, P (2010). A structural domain mediates attachment of ethanolamine phosphoglycerol to eukaryotic elongation factor 1A in Trypanosoma brucei. PLoS ONE, 5(3), e9486. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0009486
Da Silva-Azevedo, Luis; Jähne, Sebastian; Hoffmann, Christian; Stalder, Daniel; Heller, Manfred; Pries, Axel R; Zakrzewicz, Andreas; Baum, Oliver (2009). Up-regulation of the peroxiredoxin-6 related metabolism of reactive oxygen species in skeletal muscle of mice lacking neuronal nitric oxide synthase. Journal of physiology, 587(Pt 3), pp. 655-68. Oxford: Wiley-Blackwell 10.1113/jphysiol.2008.164947
Bézier, A; Annaheim, M; Herbinière, J; Wetterwald, C; Gyapay, G; Bernard-Samain, S; Wincker, P; Roditi, I; Heller, M; Belghazi, M; Pfister-Wilhelm, R; Periquet, G; Dupuy, C; Huguet, E; Volkoff, A.N.; Lanzrein, B; Drezen, J.M. (2009). Polydnaviruses of braconid wasps derive from an ancestral nudivirus. Science, 323(5916), pp. 926-930. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1166788
Koch, Rafael; Romana, Ledermann; Urwyler, Olivier; Heller, Manfred; Suter, Beat (2009). Systematic Functional Analysis of BicD Serine Phosphorylation and Intragenic Suppression of a Female Sterile Allele of BicD. PLoS ONE, 4(2), e4552. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0004552
Bartos, Katalin; Ramakrishnan, Suresh Krishna; Braga, Sophie; Hänzi, Barbara; Durussel, Fanny; Sridharan, Arjun Prakash; Zhu, Yao; Sheehan, David; Hynes, Nancy E.; Bonny, Olivier; Moor, Matthias B. (2020). Redox protein Memo 1 coordinates FGF23-driven signaling and small Rho-GTPases in the mouse kidney (In Press) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.12.04.402511
