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Milia, Sotiria; Leonard, Alexander S.; Mapel, Xena Marie; Bernal Ulloa, Sandra Milena; Drögemüller, Cord; Pausch, Hubert (2024). Taurine pangenome uncovers a segmental duplication upstream of KIT associated with depigmentation in white-headed cattle (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.02.02.578587
Ekundayo, Babatunde; Arullampalam, Prakash; Gerber, Christian E.; Hämmerli, Anne-Flore; Guichard, Sabrina; Boukenna, Mey; Ross, Daniela; Lochner, Martin; Rougier, Jean-Sébastien; Stahlberg, Henning; Abriel, Hugues; Ni, Dongchun (23 January 2024). Identification of a Binding Site for Small Molecule Inhibitors Targeting Human TRPM4 (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.01.22.576650
Bátora, Dániel; Fischer, Jérôme P.; Kaderli, Reto M.; Varga, Maté; Lochner, Martin; Gertsch, Jürg (25 February 2024). Silicon-rhodamine functionalized evocalcet probes (EvoSiR) potently and selectively label calcium sensing receptors (CaSR) in vitro, in vivo and ex vivo (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.02.22.581561
Snipes, Sophia; Krugliakova, Elena; Jaramillo, Valeria; Volk, Carina; Furrer, Melanie; Studler, Mirjam; LeBourgeois, Monique; Kurth, Salome; Jenni, Oskar G; Huber, Reto (28 February 2024). Wake EEG oscillation dynamics reflect both sleep need and brain maturation across childhood and adolescence. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.02.24.581878
Girardin, Louis; Lind, Niklas; von Tengg-Kobligk, Hendrik; Balabani, Stavroula; Díaz-Zuccarini, Vanessa (2024). Patient-specific compliant simulation framework informed by 4DMRI-extracted Pulse Wave Velocity: Application post-TEVAR (medRxiv). Cold Spring Harbor Laboratory 10.1101/2024.03.17.24304341
Mehrotra, Arnav; Leonard, Alexander S; Drogemuller, Cord; Grahofer, Alexander; Khayatzadeh, Negar; Hofer, Andreas; Neuenschwander, Stefan; Pausch, Hubert (2024). Genome-Wide Association Testing for Haemorrhagic Bowel Syndrome in a Swiss Large White Pig Population (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.04.05.588256
Rabe, Finn; Smigielski, Lukasz; Georgiadis, Foivos; Kallen, Nils; Omlor, Wolfgang; Kirschner, Matthias; Grünblatt, Edna; Barthelmes, Daniel; Schaal, Karen; Lencz, Todd; Homan, Philipp (6 April 2024). Genetic susceptibility to schizophrenia through neuroinflammatory pathways is associated with retinal thinning: Findings from the UK-Biobank. (medRxiv : the preprint server for health sciences). Cold Spring Harbor Laboratory 10.1101/2024.04.05.24305387
Chen, Judy; Ngo, Alexander; Rodríguez-Cruces, Raúl; Royer, Jessica; Caligiuri, Maria Eugenia; Gambardella, Antonio; Concha, Luis; Keller, Simon S; Cendes, Fernando; Yasuda, Clarissa L; Alvim, Marina K M; Bonilha, Leonardo; Gleichgerrcht, Ezequiel; Focke, Niels K; Kreilkamp, Barbara; Domin, Martin; von Podewils, Felix; Langner, Soenke; Rummel, Christian; Wiest, Roland; ... (6 March 2024). A WORLDWIDE ENIGMA STUDY ON EPILEPSY-RELATED GRAY AND WHITE MATTER COMPROMISE ACROSS THE ADULT LIFESPAN. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.03.02.583073
Chicca, Andrea; Batora, Daniel; Ullmer, Christoph; Caruso, Antonello; Fingerle, Jürgen; Hartung, Thomas; Degen, Roland; Müller, Matthias; Grether, Uwe; Pacher, Pal; Gertsch, Jürg (29 April 2024). A highly potent, orally bioavailable pyrazole-derived cannabinoid CB2 receptor-selective full agonist for in vivo studies. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.04.26.591311
Kaethner, Marc; Zumstein, Pascal; Preza, Matías; Grossenbacher, Philipp; Bartetzko, Anissa; Lochner, Martin; Schürch, Stefan; Regnault, Clement; Villalobos Ramirez, Daniel; Lundström Stadelmann, Britta (27 July 2024). Investigation of the threonine metabolism of Echinococcus multilocularis: the threonine dehydrogenase as a potential drug target in alveolar echinococcosis (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.07.27.605433
Jaume, Guillaume; Peeters, Thomas; Song, Andrew H; Pettit, Rowland; Williamson, Drew F K; Oldenburg, Lukas; Vaidya, Anurag; De Brot, Simone; Chen, Richard J; Thiran, Jean-Philippe; Le, Long Phi; Gerber, Georg; Mahmood, Faisal (23 July 2024). AI-driven Discovery of Morphomolecular Signatures in Toxicology. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.07.19.604355
Jaume, Guillaume; De Brot, Simone; Song, Andrew H; Williamson, Drew F K; Oldenburg, Lukas; Zhang, Andrew; Chen, Richard J; Asin, Javier; Blatter, Sohvi; Dettwiler, Martina; Goepfert, Christine; Grau-Roma, Llorenç; Soto, Sara; Keller, Stefan M; Rottenberg, Sven; Del-Pozo, Jorge; Pettit, Rowland; Le, Long Phi; Mahmood, Faisal (23 July 2024). Deep Learning-based Modeling for Preclinical Drug Safety Assessment. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.07.20.604430
Wüthrich-Grossenbacher, Ursula; Mutsinze, Abigail; Wolf, Ursula; Maponga, Charles Chiedza; Midzi, Nicholas; Mutsaka-Makuvaza, Masceline; Merten, Sonja (26 April 2023). Spiritual and religious aspects influence mental health and viral load: A quantitative study among young people living with HIV in Zimbabwe (medRxiv). Cold Spring Harbor Laboratory 10.1101/2023.04.24.23289049
Anderegg, Manuel A.; Olinger, Eric G.; Bargagli, Matteo; Geraghty, Rob; Pohlmeier, Lea; Nater, Alexander; Bruggmann, Rémy; Sayer, John A.; Vogt, Bruno; Schaller, André; Fuster, Daniel G. (27 July 2023). Prevalence and characteristics of monogenic disease in adult kidney stone formers (medRxiv). Cold Spring Harbor Laboratory 10.1101/2023.07.23.23292924
Akshay, Akshay; Katoch, Mitali; Abedi, Masoud; Besic, Mustafa; Shekarchizadeh, Navid; Burkhard, Fiona C.; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (28 June 2023). SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.06.28.533479
Akshay, Akshay; Katoch, Mitali; Shekarchizadeh, Navid; Abedi, Masoud; Sharma, Ankush; Burkhard, Fiona C.; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (4 July 2023). Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.07.04.546825
Senge, Jan F.; McMurray, Matthew T.; Haupt, Fabian; Breiding, Philipe S.; Beisbart, Claus; Daneshvar, Keivan; Komarek, Alois; Nöldge, Gerd; Mosler, Frank; Bosbach, Wolfram A. (2023). ChatGPT may free time needed by the interventional radiologist for administration / documentation: A study on the RSNA PICC line reporting template (medRxiv). Cold Spring Harbor Laboratory 10.1101/2023.07.14.23292578
Dave, Maneesh; Dev, Atul; Somoza, Rodrigo A; Zhao, Nan; Viswanath, Satish; Mina, Pooja Rani; Chirra, Prathyush; Obmann, Verena Carola; Mahabeleshwar, Ganapati H; Menghini, Paola; Johnson, Blythe Durbin; Nolta, Jan; Soto, Christopher; Osme, Abdullah; Khuat, Lam T; Murphy, William; Caplan, Arnold I; Cominelli, Fabio (24 May 2023). Mesenchymal stem cells ameliorate inflammation in an experimental model of Crohn's disease via the mesentery. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.05.22.541829
Keller, Marcel; Guellil, Meriam; Slavin, Philip; Saag, Lehti; Irdt, Kadri; Niinemäe, Helja; Solnik, Anu; Malve, Martin; Valk, Heiki; Kriiska, Aivar; Cessford, Craig; Inskip, Sarah A.; Robb, John E.; Cooper, Christine; von Planta, Conradin; Seifert, Mathias; Reitmaier, Thomas; Baetsen, Willem A.; Walker, Don; Lösch, Sandra; ... (2023). A Refined Phylochronology of the Second Plague Pandemic in Western Eurasia (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.07.18.549544
Bhérer, Claude; Eveleigh, Robert; Trajanoska, Katerina; St-Cry, Janick; Paccard, Antoine; Ravindran, Praveen Nadukkalam; Caron, Elizabeth; Asbah, Nimara Bader; Wei, Claire; Baumgartner, Iris; Schindewolf, Marc; Döring, Yvonne; Perley, Danielle; Lefebvre, François; Lepage, Pierre; Bourgey, Mathieu; Bourque, Guillaume; Ragoussis, Jiannis; Mooser, Vincent and Taliun, Daniel (2023). WEGS: a cost-effective sequencing method for genetic studies combining high-depth whole exome and low-depth whole genome (In Press) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.04.27.538531
Khatami, Ramin; Gnaiger, Dominik; Hügli, Gordana; Qi, Ming; Zhang, Zhongxing (6 January 2023). The impact of central and obstructive respiratory events on cerebral oxygenation in adults with sleep disordered breathing (In Press) (medRxiv). Cold Spring Harbor Laboratory 10.1101/2023.01.05.23284218
Terrazos Miani, Miguel A.; Borcard, Loïc; Gempeler, Sonja; Baumann, Christian; Bittel, Pascal; Leib, Stephen L.; Neuenschwander, Stefan; Ramette, Alban (2023). NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A rapid, PCR-free method for whole genome sequencing of pathogens in clinical samples (Submitted) (medRxiv). Cold Spring Harbor Laboratory 10.1101/2023.03.10.23287094
Kapp, Friedrich G.; Bazgir, Farhad; Mahammadzade, Nagi; Vassella, Erik; Döring, Yvonne; Karow, Axel; Seebauer, Caroline; Platz Batista da Silva, Natascha; Wohlgemuth, Walter A.; Krönig, Pia; Niemeyer, Charlotte M.; Schanze, Denny; Zenker, Martin; Eng, Whitney; Ahmadian, Mohammad R.; Baumgartner, Iris; Rössler, Jochen (2023). Somatic RIT1 indels identified in arteriovenous malformations hyperactivate RAS-MAPK signaling and are amenable to MEK inhibition (medRxiv). Cold Spring Harbor Laboratory 10.1101/2023.11.13.23298448
Tandon, Disha; Dong, Yuan; Hapfelmeier, Siegfried Hektor (5 December 2023). Pipeline for species-resolved full-length16S rRNA amplicon nanopore sequencing analysis of low-complexity bacterial microbiota (BioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.12.05.570138
Vico-Oton, Eduard; Volet, Colin; Jacquemin, Nicolas; Dong, Yuan; Hapfelmeier, Siegfried Hektor; Lederballe Meibom, Karin; Bernier-Latmani, Rizlan (14 April 2023). Strain-dependent induction of primary bile acid 7-dehydroxylation by cholic acid (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.02.15.480494
Hashemi Gheinani, Ali; Sack, Bryan S; Bigger-Allen, Alex; Thaker, Hatim; Atta, Hussein; Lambrinos, George; Costa, Kyle; Doyle, Claire; Gharaee-Kermani, Mehrnaz; Patalano, Susan; Piper, Mary; Cotellessa, Justin F; Vitko, Dijana; Li, Haiying; Prabhakaran, Manubhai Kadayil; Cristofaro, Vivian; Froehlich, John; Lee, Richard S; Yang, Wei; Sullivan, Maryrose P; ... (10 December 2023). Integrated omics analysis unveils a DNA damage response to neurogenic injury. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.12.10.571015
Li, Jia J; Vasciaveo, Alessandro; Karagiannis, Dimitrios; Sun, Zhen; Chen, Xiao; Socciarelli, Fabio; Frankenstein, Ziv; Zou, Min; Pannellini, Tania; Chen, Yu; Gardner, Kevin; Robinson, Brian D; de Bono, Johann; Abate-Shen, Cory; Rubin, Mark A.; Loda, Massimo; Sawyers, Charles L; Califano, Andrea; Lu, Chao and Shen, Michael M (19 July 2023). NSD2 maintains lineage plasticity and castration-resistance in neuroendocrine prostate cancer. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.07.18.549585
Kerestes, Rebecca; Perry, Andrew; Vivash, Lucy; O'Brien, Terence J; Alvim, Marina K M; Arienzo, Donatello; Aventurato, Ítalo K; Ballerini, Alice; Baltazar, Gabriel F; Bargalló, Núria; Bender, Benjamin; Brioschi, Ricardo; Bürkle, Eva; Caligiuri, Maria Eugenia; Cendes, Fernando; de Tisi, Jane; Duncan, John S; Engel, Jerome P; Foley, Sonya; Fortunato, Francesco; ... (23 October 2023). Patterns of subregional cerebellar atrophy across epilepsy syndromes: An ENIGMA-Epilepsy study. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.10.21.562994
Barut, Tuba; Halwe, Nico Joel; Taddeo, Adriano; Kelly, Jenna N.; Schön, Jacob; Ebert, Nadine; Ulrich, Lorenz; Devisme, Christelle; Steiner, Silvio; Trüeb, Bettina Salome; Hoffmann, Bernd; Berenguer Veiga, Inês; Leborgne, Nathan Georges François; Aguiar Moreira, Etori; Breithaupt, Angele; Wylezich, Claudia; Höper, Dirk; Wernike, Kerstin; Godel, Aurélie; Thomann, Lisa; ... (2022). The spike gene is a major determinant for the SARS-CoV-2 Omicron-BA. 1 phenotype (bioRxiv). Cold Spring Harbor Laboratory
Wall, Mark J.; Hill, Emily; Huckstepp, Robert; Barkan, Kerry; Deganutti, Giuseppe; Leuenberger, Michele; Preti, Barbara; Winfield, Ian; Carvalho, Sabrina; Suchankova, Anna; Wei, Haifeng; Safitri, Dewi; Huang, Xianglin; Imlach, Wendy; La Mache, Circe; Dean, Eve; Hume, Cherise; Hayward, Stephanie; Oliver, Jess; Zhao, Fei-Yue; ... (27 April 2022). Selective activation of Gαob by an adenosine A1 receptor agonist elicits analgesia without cardiorespiratory depression (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.04.04.023945
Muri, Jonathan; Cecchinato, Valentina; Cavalli, Andrea; Shanbhag, Akanksha A; Matkovic, Milos; Biggiogero, Maira; Maida, Pier Andrea; Toscano, Chiara; Ghovehoud, Elaheh; Danelon-Sargenti, Gabriela; Gong, Tao; Piffaretti, Pietro; Bianchini, Filippo; Crivelli, Virginia; Podešvová, Lucie; Pedotti, Mattia; Jarrossay, David; Sgrignani, Jacopo; Thelen, Sylvia; Uhr, Mario; ... (23 May 2022). Anti-chemokine antibodies after SARS-CoV-2 infection correlate with favorable disease course. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.05.23.493121
Kucharczyk, Patrycja; Albano, Giuseppe; Deisl, Christine; Wueest, Stephan; Konrad, Daniel; Fuster, Daniel G (26 March 2022). Thiazides induce glucose intolerance through inhibition of mitochondrial carbonic anhydrase 5b in β-cells (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.03.23.485566
Sheffield, James G.; Ramerpresad, Sumientra; Brem, Anna-Katharine; Mansfield, Karen; Orhan, Umut; Dillard, Michael; McKanna, James; Plessow, Franziska; Thompson, Todd; Santarnecchi, Emiliano; Pascual-Leone, Alvaro; Pavel, Misha; Mathan, Santosh; Kadosh, Roi Cohen (23 June 2022). Blinding efficacy and adverse events following repeated transcranial alternating current, direct current, and random noise stimulation (In Press) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.03.04.482999
Komninou, Maria A; Nambiar, Malavika H; Frueh E, Beatrice; Enzmann, Volker; Büchler, Philippe; Seiler, Theo G (18 August 2022). Oxygen kinetics during CXL using symmetrically and asymmetrically pulsed UV-irradiation (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.08.17.504256
Inglebert, Marine; Dettwiler, Martina; Hahn, Kerstin; Letko, Anna; Drögemüller, Cord; Doench, John; Brown, Adam; Memari, Yasin; Davies, Helen; Degasperi, Andrea; Nik-Zainal, Serena; Rottenberg, Sven (2022). A living biobank of canine mammary tumor organoids as a comparative model for human breast cancer (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.09.02.505845
Cusinato, Riccardo; Alnes, Sigurd L; van Maren, Ellen; Boccalaro, Ida; Ledergerber, Debora; Adamantidis, Antoine; Imbach, Lukas L; Schindler, Kaspar; Baud, Maxime O; Tzovara, Athina (28 September 2022). Intrinsic neural timescales in the temporal lobe support an auditory processing hierarchy (In Press) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.09.27.509695
Hill, Emily; Huang, Xianglin; Del Popolo, Ivana; La Mache, Circe; Lochner, Martin; Ladds, Graham; Frenguelli, Bruno G.; Wall, Mark J. (2 December 2022). Species-dependent actions of the Goαb selective adenosine A1 receptor agonist BnOCPA (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.12.02.518704
Potiekhina, Inna (2022). Population Genomics of Stone Age Eurasia (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.05.04.490594
Andina, Nicola; de Meuron, Louise; Schnegg-Kaufmann, Annatina Sarah; Ansermet, Camille; Bombaci, Giuseppe; Keller, Nino; Porret, Naomi; Angelillo-Scherrer, Anne; Bonadies, Nicolas; Allam, Ramanjaneyulu (31 January 2022). Heightened NLRP3 inflammasome activation is associated with aging and CMML diseases severity (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.01.27.477992
Lee, Sohyon; Weiss, Tobias; Bühler, Marcel; Mena, Julien; Lottenbach, Zuzanna; Wegmann, Rebekka; Bihl, Michel; Augustynek, Bartlomiej; Baumann, Sven; Goetze, Sandra; van Drogen, Audrey; Vasella, Flavio; Rushing, Elisabeth J; Wollscheid, Bernd; Hediger, Matthias A; Snijder, Berend (7 October 2022). Targeting tumour-intrinsic neural vulnerabilities of glioblastoma (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.10.07.511321
Bertschi, Nicole L; Steck, Oliver; Luther, Fabian; Bazzini, Cecilia; von Meyenn, Leonhard; Felser, Andrea; Keller, Irene; Friedli, Olivier; Freigang, Stefan; Begré, Nadja; Lamos, Cristina; Gabutti, Max Philip; Benzaquen, Michael; Laimer, Markus; Simon, Dagmar; Nuoffer, Jean-Marc; Schlapbach, Christoph (16 August 2022). PPAR-γ regulates the effector function of human TH9 cells by promoting glycolysis (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.08.16.503972
Wyss, Jacqueline; Raselli, Tina; Wyss, Annika; Telzerov, Anja; Rogler, Gerhard; Krupka, Niklas; Yilmaz, Bahtiyar; Schmidt, Thomas SB; Misselwitz, Benjamin (2 December 2022). Development of non-alcoholic steatohepatitis is associated with gut microbiota but not oxysterol synthesis (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.12.02.518833
Wyler, Florian; Oestreich, Marc-Alexander; Frauchiger, Bettina S.; Ramsey, Kathryn; Latzin, Philipp (12 February 2021). Correction of measurement error in a commercial multiple-breath washout device (medRxiv). Cold Spring Harbor Laboratory 10.1101/2021.02.06.21251250
Kwon, Young Mi; Vranken, Nathan; Hoge, Carla; Lichak, Madison R; Francis, Kerel X; Camacho-Garcia, Julia; Bista, Iliana; Wood, Jonathan; McCarthy, Shane; Chow, William; Tan, Heok Hui; Howe, Kerstin; Bandara, Sepalika; von Lintig, Johannes; Rüber, Lukas; Durbin, Richard; Svardal, Hannes; Bendesky, Andres (May 2021). Genomic consequences of domestication of the Siamese fighting fish (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.04.29.442030
Tirot, Louis; Jullien, Pauline E. (28 July 2021). DNA METHYLTRANSFERASE 3 (MET3) is regulated by Polycomb Group complex during Arabidopsis endosperm development (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.06.28.450243
Bonnet, Diane M. V. J.; Grob, S; Tirot, Louis; Jullien, Pauline E. (1 April 2021). Methylome dynamic upon proteasome inhibition by the Pseudomonas syringae virulence factor Syringolin A (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.01.19.427327
Foote, Andrew D.; Gilbert, M. Thomas P.; Gopalakrishnan, Shyam; Louis, Marie; Martin, Michael D.; Morin, Phillip A.; Nykänen, Milaja; Scharff-Olsen, Camilla Hjorth; Excoffier, Laurent (21 August 2021). Evidence of long-term purging of mutation load in killer whale genomes (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.21.457186
Moinet, Antoine; Peischl, Stephan; Excoffier, Laurent (25 August 2021). Strong neutral sweeps occurring during a population contraction (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.25.457712
Lepeu, Gregory; van Maren, Ellen; Slabeva, Kristina; Fuchs, Markus; Anso, Juan; Z'Graggen, Werner J.; Pollo, Claudio; Schindler, Kaspar A.; Adamantidis, Antoine; Baud, Maxime O. (18 February 2021). Probing cortical excitability under GABAergic modulation (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.02.18.431873
Borcard, Loïc; Gempeler, Sonja; Terrazos Miani, Miguel A.; Baumann, Christian; Grädel, Carole; Dijkman, Ronald; Suter-Riniker, Franziska; Leib, Stephen L; Bittel, Pascal; Neuenschwander, Stefan; Ramette, Alban (2021). Investigating the biological and technical origins of unknown bases in the S region of the SARS-CoV-2 Delta variant genome sequences (medRxiv). Cold Spring Harbor Laboratory 10.1101/2021.09.09.21262951
Akello, Joyce Odeke; Kamgang, Richard; Barbani, Maria Teresa; Suter-Riniker, Franziska; Aebi, Christoph; Beuret, Christian; Paris, Daniel H.; Leib, Stephen L.; Ramette, Alban (2021). Genomic analyses of human adenoviruses unravel novel recombinant genotypes associated with severe infections in pediatric patients (medRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.01.21261368
Gyimesi, Gergely; Hediger, Matthias A. (2021). Systematic in silico discovery of novel solute carrier-like proteins from proteomes (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.11.19.469292
Augustynek, Bartlomiej; Gyimesi, Gergely; Dernic, Jan; Sallinger, Matthias; Albano, Giuseppe; Klesse, Gabriel J.; Kandasamy, Palanivel; Grabmayr, Herwig; Frischauf, Irene; Fuster, Daniel G.; Peinelt, Christine; Hediger, Matthias A.; Bhardwaj, Rajesh (2021). Dissecting gating mechanisms of Orai calcium channel paralogs using constitutively active Orai mutants that mimic STIM1-gated state (In Press) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.10.26.465861
Viberti, Bianca; Branca, Lisa; Bellini, Simone; Bassetti, Claudio L.A.; Adamantidis, Antoine; Schmidt, Markus (30 December 2021). Narcolepsy and the Dissociation of REM Sleep and Cataplexy through Ambient Temperature Manipulation (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.12.29.474449
Messikomer, A; Bruktawit, M; Seipel, Katja; Valk, P; Theocharides, A; Pabst, Thomas; Mckeague, M; Luedtke, N (25 May 2021). Cancer Prognosis According to Parthanatos Features (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.05.24.445484
Bombaci, Giuseppe; Sarangdhar, Mayuresh Anant; Andina, Nicola; Tardivel, Aubry Bernard Maurice; Chi-Wang Yu, Eric; Mackie, Gillian M.; Pugh, Matthew; Ozan, Vedat Burak; Banz, Yara; Spinetti, Thibaud; Hirzel, Cédric; Youd, Esther; Schefold, Joerg C.; Taylor, Graham; Gazdhar, Amiq; Bonadies, Nicolas; Angelillo-Scherrer, Anne; Schneider, Pascal; Maslowski, Kendle M. and Allam, Ramanjaneyulu (26 August 2021). LRR protein RNH1 dampens the inflammasome activation and is associated with adverse clinical outcomes in COVID-19 patients (In Press) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.04.12.438219
Arullampalam, Prakash; Preti, Barbara; Ross-Kaschitza, Daniela; Lochner, Martin; Rougier, Jean-Sébastien; Abriel, Hugues (2 June 2021). Species-specific effects of cation channel TRPM4 small-molecule inhibitors (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.06.01.446517
Abou-Hamdan, Abbas; Mahler, Roman; Grossenbacher, Philipp; Biner, Olivier; Sjöstrand, Dan; Lochner, Martin; Högbom, Martin; von Ballmoos, Christoph (23 December 2021). Functional design of bacterial superoxide:quinone oxidoreductase (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.12.23.473985
Jullien, Pauline E.; Bonnet, Diane M. V. J.; Pumplin, N.; Schroeder, Jens A.; Voinnet, O. (19 May 2020). Asymmetric Expression of Argonautes in Arabidopsis Reproductive Tissues (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.05.18.102863
Van Doan, Cong; Züst, Tobias; Maurer, Corina; Zhang, Xi; Machado, Ricardo A. R.; Mateo, Pierre; Ye, Meng; Schimmel, Bernardus C. J.; Glauser, Gaétan; Robert, Christelle A. M. (23 February 2020). Tissue-specific volatile-mediated defense regulation in maize leaves and roots (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.02.21.959437
Ruch, Simon; Züst, Marc Alain; Henke, Katharina (2020). Sleep-learning Impairs Subsequent Wake-learning (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.07.16.206482
Newbery, D. M.; Zahnd, C. (4 August 2020). Changes in liana density over 30 years in a Bornean rain forest supports the escape hypothesis (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.08.03.234500
Newbery, D. M.; Lingenfelder, M. (29 July 2020). Stem girth changes in response to soil water potential in lowland dipterocarp forest in Borneo: a time-series analysis (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.07.28.222547
Newbery, David M.; Stoll, Peter (4 August 2020). Including tree spatial extension in the evaluation of neighbourhood competition effects in Bornean rain forest (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.07.27.222513
Deganutti, Giuseppe; Barkan, Kerry; Preti, Barbara; Leuenberger, Michele; Wall, Mark; Frenguelli, Bruno G.; Lochner, Martin; Ladds, Graham; Reynolds, Christopher A. (22 October 2020). Deciphering the Agonist Binding Mechanism to the Adenosine A1 Receptor (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.10.22.350827
Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Gunthard, Huldrych; Libby, Peter; Boerwinkle, Eric; McLaren, Paul; Ballantyne, Christie M; Grinspoon, Steven K; Natarajan, Pradeep; Fellay, Jacques (7 November 2020). Increased CHIP Prevalence Amongst People Living with HIV. (medRxiv). Cold Spring Harbor Laboratory 10.1101/2020.11.06.20225607
Louro, Marco António Dias; Bettencourt-Dias, Mónica; Bank, Claudia (2020). Patterns of selection against centrosome amplification in human cell lines. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.01.24.918615
Ojala, Karita; Tzovara, Athina; Poser, Benedikt A.; Lutti, Antoine; Bach, Dominik R. (2020). Asymmetric representation of aversive prediction errors in Pavlovian threat conditioning (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.07.10.197665
Billings, Jacob; Tivadar, Ruxandra; Murray, Micah; Franceschiello, Benedetta; Petri, Giovanni (2020). Topological Features of Electroencephalography are Reference-Invariant (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.09.25.311829
Turoman, Nora; Tivadar, Ruxandra I.; Retsa, Chrysa; Maillard, Anne M.; Scerif, Gaia; Matusz, Pawel J. (2020). Uncovering the mechanisms of real-world attentional control over the course of primary education (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.10.20.342758
Bartos, Katalin; Ramakrishnan, Suresh Krishna; Braga, Sophie; Hänzi, Barbara; Durussel, Fanny; Sridharan, Arjun Prakash; Zhu, Yao; Sheehan, David; Hynes, Nancy E.; Bonny, Olivier; Moor, Matthias B. (2020). Redox protein Memo 1 coordinates FGF23-driven signaling and small Rho-GTPases in the mouse kidney (In Press) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2020.12.04.402511
Bont, Zoe; Pfander, Marc; Robert, Christelle A. M.; Huber, Meret; Poelman, Erik H.; Raaijmakers, Ciska E.; Erb, Matthias (19 February 2019). Adapted dandelions increase seed dispersal potential when they are attacked by root herbivores (bioRxiv 551630). Cold Spring Harbor Laboratory 10.1101/551630
Hervé, Maxime R.; Erb, Matthias (6 March 2019). Distinct defense strategies allow different grassland species to cope with root herbivore attack (bioRxiv). Cold Spring Harbor Laboratory
Voelkl, Bernhard; Würbel, Hanno (January 2019). A Reaction Norm Perspective on Reproducibility (bioRxiv 510941). Cold Spring Harbor Laboratory 10.1101/510941
Pichon, Noémie A.; Cappelli, Seraina; Soliveres, Santiago; Hölzel, Norbert; Klaus, Valentin H.; Kleinebecker, Till; Allan, Eric (2019). Decomposition disentangled: a test of the multiple mechanisms by which nitrogen enrichment alters litter decomposition (bioRxiv). Cold Spring Harbor Laboratory 10.1101/671545
Zhang, Xi; van Doan, Cong; Arce, Carla C.M.; Hu, Lingfei; Grünig, Sandra; Parisod, Christian Gérard; Hibbard, Bruce E.; Hervé, Maxime; Robert, Christelle A. M.; Machado, Ricardo A.R.; Erb, Matthias (24 July 2019). Plant defense resistance in natural enemies of a specialist insect herbivore (bioRxiv). Cold Spring Harbor Laboratory 10.1101/710681
Jochum, Malte; Fischer, Markus; Isbell, Forest; Roscher, Christiane; van der Plas, Fons; Boch, Steffen; Boenisch, Gerhard; Buchmann, Nina; Catford, Jane A.; Cavender-Bares, Jeannine; Ebeling, Anne; Eisenhauer, Nico; Gleixner, Gerd; Hölzel, Norbert; Kattge, Jens; Klaus, Valentin H.; Kleinebecker, Till; Lange, Markus; Le Provost, Gaëtane; Meyer, Sebastian T.; ... (5 August 2019). The results of biodiversity-ecosystem functioning experiments are realistic (bioRxiv). Cold Spring Harbor Laboratory 10.1101/725812
PCAWG Driver Group, PCAWG Driver Group; Lanzos, Andrés (2019). Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes (bioRxiv). Cold Spring Harbor Laboratory 10.1101/237313
Carlevaro-Fita, Joana; Lanzos, Andrés; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Skou Pedersen, Jakob; Johnson, Rory (2019). Unique genomic features and deeply-conserved functions of long non-coding RNAs in the Cancer LncRNA Census (CLC) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/152769
Zamprogno, Pauline; Wüthrich, Simon; Achenbach, Sven; Stucki, Janick D.; Hobi, Nina; Schneider-Daum, Nicole; Lehr, Claus-Michael; Huwer, Hanno; Geiser, Thomas; Schmid, Ralph A.; Guenat, Olivier T. (2019). Second-generation lung-on-a-chip array with a stretchable biological membrane (bioRxiv). Cold Spring Harbor Laboratory 10.1101/608919
Herbrand, Amanda; Schmitt, Andreas; Briel, Matthias; Diem, Stefan; Ewald, Hannah; Hoogkamer, Anouk; Joerger, Markus; Mc Cord, Kimberly; Novak, Urban; Sricharoenchai, Sirintip; Hemkens, Lars; Kasenda, Benjamin (29 July 2019). Contrasting Evidence to Reimbursement Reality for Off-label use 1 (OLU) of Drug Treatments in Cancer Care – Rationale and Design of 2 the CEIT-OLU-project (medRxiv). Cold Spring Harbor Laboratory 10.1101/19003152
Cappelli, Seraina L.; Pichon, Noémie A.; Kempel, Anne; Allan, Eric (October 2019). Sick plants in grassland communities: a growth-defense trade-off is the main driver of fungal pathogen abundance and impact (bioRxiv 806299). Cold Spring Harbor Laboratory 10.1101/806299
Wasimuddin, Wasimuddin; Schlaeppi, Klaus; Ronchi, Francesca; Leib, Stephen L.; Erb, Matthias; Ramette, Alban (15 November 2019). Evaluation of primer pairs for microbiome profiling across a food chain from soils to humans within the One Health framework (bioRxiv). Cold Spring Harbor Laboratory 10.1101/843144
Vincent, Hugo; Bornand, Christophe N.; Kempel, Anne; Fischer, Markus (16 October 2019). Rare species perform worse than common species under changed climate (bioRxiv). Cold Spring Harbor Laboratory 10.1101/805416
Proix, Timothée; Truccolo, Wilson; Leguia, Marc G.; King-Stephens, David; Rao, Vikram R.; Baud, Maxime O. (2019). Forecasting Seizure Risk over Days (medRxiv). Cold Spring Harbor Laboratory 10.1101/19008086
Jakob, Manuel O.; Sánchez-Taltavull, Daniel; Yilmaz, Bahtiyar; Malinka, Thomas; Mooser, Catherine; Spari, Daniel; Salm, Lilian A.; Freiburghaus, Katrin; Pereyra, David; Hapfelmeier, Siegfried; Masoodi, Mojgan; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gomez de Agüero, Mercedes; Beldi, Guido (19 September 2019). Compartmentalization of intestinal bacteria by hepatic ILC3s prevents infections after surgery (bioRxiv). Cold Spring Harbor Laboratory 10.1101/773150
Keller, Marcel; Spyrou, Maria A.; McCormick, Michael; Bos, Kirsten I.; Herbig, Alexander; Krause, Johannes (November 2019). Ancient Yersinia pestis genomes provide no evidence for the origins or spread of the Justinianic Plague. (Unpublished) (bioRxiv). Cold Spring Harbor Laboratory 10.1101/819698
Sohlström, Esra Helena; Marian, Lucas; Barnes, Andrew David; Haneda, Noor F.; Scheu, Stefan; Rall, Björn Christian; Brose, Ulrich; Jochum, Malte (9 April 2018). Applying generalised allometric regressions to predict live body mass of tropical and temperate arthropods (Unpublished) Cold Spring Harbor Laboratory 10.1101/297697
Schneider, Florian D; Jochum, Malte; Le Provost, Gaëtane; Ostrowski, Andreas; Penone, Caterina; Fichtmüller, David; Güntsch, Anton; Gossner, Martin M.; König-Ries, Brigitta; Manning, Pete; Simons, Nadja K. (29 May 2018). Towards an Ecological Trait-data Standard (Unpublished) (bioRxiv 328302). Cold Spring Harbor Laboratory 10.1101/328302
Huang, Wei; Gfeller, Valentin; Erb, Matthias (13 October 2018). Root volatiles in plant-plant interactions II: Root terpenes from Centaurea stoebe modify Taraxacum officinale root chemistry and root herbivore growth (Unpublished) (bioRxiv 441790). Cold Spring Harbor Laboratory 10.1101/441790
Gfeller, Valentin; Huber, Meret; Foerster, Christiane; Huang, Wei; Koellner, Tobias G.; Erb, Matthias (13 October 2018). Root volatiles in plant-plant interactions I: Characterization of root sesquiterpene emissions from Centaurea stoebe and their effects on other plants (Unpublished) (bioRxiv 441717). Cold Spring Harbor Laboratory 10.1101/441717
Zhang, Xi; Machado, Ricardo A. R.; Van Doan, Cong; Arce, Carla C. M.; Hu, Lingfei; Robert, Christelle A. M. (13 October 2018). Entomopathogenic nematodes increase predation success by inducing specific cadaver volatiles that attract healthy herbivores (Unpublished) (bioRxiv 442483). Cold Spring Harbor Laboratory 10.1101/442483
V'kovski, Philip; Gerber, M; Kelly, Jenna Nicole; Pfänder, Stephanie; Ebert, Nadine; Braga, Sophie Marie-Pierre; Simillion, Cedric André Marie; Portmann, Jasmine; Stalder, Hanspeter; Gaschen, Véronique; Bruggmann, Rémy; Stoffel, Michael Hubert; Heller, Manfred; Dijkman, Ronald; Thiel, Volker Earl (14 September 2018). Determination of host cell proteins constituting the molecular microenvironment of coronavirus replicase complexes by proximity-labeling (bioRxiv). Cold Spring Harbor Laboratory 10.1101/417907
Jullien, Pauline E.; Grob, Stefan; Marchais, Antonin; Pumplin, Nathan; Chevalier, Clement; Otto, Caroline; Schott, Gregory; Voinnet, Olivier (18 December 2018). Functional characterization of Arabidopsis ARGONAUTE 3 in reproductive tissue (bioRxiv 500769). Cold Spring Harbor Laboratory 10.1101/500769
Robinson, Sarah Jane; Huflejt, Michal; Barbier de Reuille, Pierre; Braybrook, Siobhan A.; Schorderet, Martine; Reinhardt, Didier; Kuhlemeier, Cris (1 September 2017). An automated confocal micro-extensometer enables in vivo quantification of mechanical properties with cellular resolution. (Unpublished) Cold Spring Harbor Laboratory 10.1101/183533
Gauzens, Benoit; Barnes, Andrew; Jochum, Malte; Hines, Jes; Wang, Shaopeng; Giling, Darren; Rosebaum, Benjamin; Brose, Ulrich (5 December 2017). fluxweb: a package to easily estimate energy fluxes in food webs (Unpublished) Cold Spring Harbor Laboratory 10.1101/229450
Odriozola, Adolfo; Llodrá, Jaime; Radecke, Julika; Ruegsegger, Céline; Tschanz, Stefan; Saxena, Smita; Rohr, Stephan; Zuber, Benoît (2017). High contrast staining for serial block face scanning electron microscopy without uranyl acetate (bioRxiv). Cold Spring Harbor Laboratory 10.1101/207472
Zhang, Feng; Tsai, Hsing-Chen; Airan, Raag D; Stuber, Garret D; Adamantidis, Antoine Roger; de Lecea, Luis; Bonci, Antonello; Deisseroth, Karl (2015). Optogenetics in Freely Moving Mammals: Dopamine and Reward. Cold Spring Harbor protocols, 2015(8), pp. 715-724. Cold Spring Harbor Laboratory 10.1101/pdb.top086330
Adamantidis, Antoine Roger; Zhang, Feng; de Lecea, Luis; Deisseroth, Karl (2014). Optogenetics: opsins and optical interfaces in neuroscience. Cold Spring Harbor protocols, 2014(8), pp. 815-822. Cold Spring Harbor Laboratory 10.1101/pdb.top083329
Adamantidis, Antoine Roger; Zhang, Feng; de Lecea, Luis; Deisseroth, Karl (2014). Establishing a fiber-optic-based optical neural interface. Cold Spring Harbor protocols, 2014(8), pp. 839-844. Cold Spring Harbor Laboratory 10.1101/pdb.prot083337
Alansary, Dalia; Kilch, Tatiana; Holzmann, Christian; Peinelt, Christine; Hoth, Markus; Lis, Annette (2014). Patch-clamp measurement of ICRAC and ORAI channel activity. Cold Spring Harbor protocols, 2014(6), pp. 602-607. Cold Spring Harbor Laboratory 10.1101/pdb.top066795
Alansary, Dalia; Kilch, Tatiana; Holzmann, Christian; Peinelt, Christine; Hoth, Markus; Lis, Annette (2014). The minimal requirements to use calcium imaging to analyze ICRAC. Cold Spring Harbor protocols, 2014(6), pp. 638-642. Cold Spring Harbor Laboratory 10.1101/pdb.prot073262
Alansary, Dalia; Kilch, Tatiana; Holzmann, Christian; Peinelt, Christine; Hoth, Markus; Lis, Annette (2014). Measuring endogenous ICRAC and ORAI currents with the patch-clamp technique. Cold Spring Harbor protocols, 2014(6), pp. 630-637. Cold Spring Harbor Laboratory 10.1101/pdb.prot073254
Murayama, M; Larkum, M E (2012). Fiber-optic calcium monitoring of dendritic activity in vivo. Cold Spring Harbor protocols, 2012(2), pp. 218-225. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory 10.1101/pdb.prot067835