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V'kovski, Philip; Gerber, M; Kelly, Jenna Nicole; Pfänder, Stephanie; Ebert, Nadine; Braga, Sophie Marie-Pierre; Simillion, Cedric André Marie; Portmann, Jasmine; Stalder, Hanspeter; Gaschen, Véronique; Bruggmann, Rémy; Stoffel, Michael Hubert; Heller, Manfred; Dijkman, Ronald; Thiel, Volker Earl (14 September 2018). Determination of host cell proteins constituting the molecular microenvironment of coronavirus replicase complexes by proximity-labeling (bioRxiv). Cold Spring Harbor Laboratory 10.1101/417907
Schön, Jacob; Barut, G Tuba; Trüeb, Bettina Salome; Halwe, Nico Joel; Berenguer Veiga, Inês; Kratzel, Annika; Ulrich, Lorenz; Kelly, Jenna N; Brügger, Melanie; Wylezich, Claudia; Taddeo, Adriano; Aguiar Moreira, Etori; Túrós, Demeter; Grau-Roma, Llorenç; Ahrens, Ann Kathrin; Schlottau, Kore; Britzke, Tobias; Breithaupt, Angele; Corleis, Björn; Kochmann, Jana; ... (2024). A safe, effective and adaptable live-attenuated SARS-CoV-2 vaccine to reduce disease and transmission using one-to-stop genome modifications. Nature microbiology, 9(8), pp. 2099-2112. Springer Nature 10.1038/s41564-024-01755-1
Schmied, Kimberly; Ehmann, Rosina; Kristen-Burmann, Claudia; Ebert, Nadine; Barut, Güliz Tuba; Almeida, Lea; Kelly, Jenna N; Thomann, Lisa; Stalder, Hanspeter; Lang, Reto; Tekes, Gergely; Thiel, Volker (2024). An RNA replicon system to investigate promising inhibitors of feline coronavirus. Journal of virology, 98(2), e0121623. American Society for Microbiology 10.1128/jvi.01216-23
Kristen-Burmann, Claudia; Rogger, Peter; Berenguer Veiga, Inês; Riebesehl, Stefanie; Rappe, Julie; Ebert, Nadine; Sautter, Carmen A; Kelly, Jenna N; Stalder, Hanspeter; Ehmann, Rosina; Huber, Michael; Posthaus, Horst; Ruggli, Nicolas; Thiel, Volker; Tekes, Gergely (2023). Reverse Genetic Assessment of the Roles Played by the Spike Protein and ORF3 in Porcine Epidemic Diarrhea Virus Pathogenicity. Journal of virology, 97(7), e0196422. American Society for Microbiology 10.1128/jvi.01964-22
Barut, G Tuba; Halwe, Nico Joel; Taddeo, Adriano; Kelly, Jenna N; Schön, Jacob; Ebert, Nadine; Ulrich, Lorenz; Devisme, Christelle; Steiner, Silvio; Trüeb, Bettina Salome; Hoffmann, Bernd; Berenguer Veiga, Inês; Leborgne, Nathan Georges François; Aguiar Moreira, Etori; Breithaupt, Angele; Wylezich, Claudia; Höper, Dirk; Wernike, Kerstin; Godel, Aurélie; Thomann, Lisa; ... (2022). The spike gene is a major determinant for the SARS-CoV-2 Omicron-BA.1 phenotype. Nature Communications, 13(1), p. 5929. Springer Nature 10.1038/s41467-022-33632-y
Gultom, Mitra; Kratzel, Annika; Portmann, Jasmine; Stalder, Hanspeter; Chanfon Bätzner, Astrid; Gantenbein, Hans; Gurtner, Corinne; Ebert, Nadine; Gad, Hans Henrik; Hartmann, Rune; Posthaus, Horst; Zanolari, Patrik; Pfaender, Stephanie; Thiel, Volker Earl; Dijkman, Ronald (2022). Establishment of well-differentiated camelid airway cultures to study Middle East respiratory syndrome coronavirus. Scientific reports, 12(1), p. 10340. Springer Nature 10.1038/s41598-022-13777-y
Barut, Tuba; Halwe, Nico Joel; Taddeo, Adriano; Kelly, Jenna N.; Schön, Jacob; Ebert, Nadine; Ulrich, Lorenz; Devisme, Christelle; Steiner, Silvio; Trüeb, Bettina Salome; Hoffmann, Bernd; Berenguer Veiga, Inês; Leborgne, Nathan Georges François; Aguiar Moreira, Etori; Breithaupt, Angele; Wylezich, Claudia; Höper, Dirk; Wernike, Kerstin; Godel, Aurélie; Thomann, Lisa; ... (2022). The spike gene is a major determinant for the SARS-CoV-2 Omicron-BA. 1 phenotype (bioRxiv). Cold Spring Harbor Laboratory
Gultom, Mitra; Licheri, Matthias; Laloli, Laura; Wider, Manon; Strässle, Marina; V'kovski, Philip; Steiner, Silvio; Kratzel, Annika; Tran, Thi Nhu Thao; Probst, Lukas; Stalder, Hanspeter; Portmann, Jasmine; Holwerda, Melle; Ebert, Nadine; Stokar-Regenscheit, Nadine; Gurtner, Corinne; Zanolari, Patrik; Posthaus, Horst; Schuller, Simone; Vicente-Santos, Amanda; ... (2021). Susceptibility of Well-Differentiated Airway Epithelial Cell Cultures from Domestic and Wild Animals to Severe Acute Respiratory Syndrome Coronavirus 2. Emerging infectious diseases, 27(7), pp. 1811-1820. Centers for Disease Control and Prevention 10.3201/eid2707.204660
Klaus, Julia; Meli, Marina L; Willi, Barbara; Nadeau, Sarah; Beisel, Christian; Stadler, Tanja; Sars-CoV-Sequencing Team, ETH; Egberink, Herman; Zhao, Shan; Lutz, Hans; Riond, Barbara; Rösinger, Nina; Stalder, Hanspeter; Renzullo, Sandra; Hofmann-Lehmann, Regina (2021). Detection and Genome Sequencing of SARS-CoV-2 in a Domestic Cat with Respiratory Signs in Switzerland. Viruses, 13(3) MDPI 10.3390/v13030496
Asín, Javier; Hilbe, Monika; de Miguel, Ricardo; Rodríguez-Largo, Ana; Lanau, Antonio; Akerman, Alberto; Stalder, Hanspeter; Schweizer, Matthias; Luján, Lluís (2021). An outbreak of abortions, stillbirths and malformations in a Spanish sheep flock associated with a bovine viral diarrhoea virus 2-contaminated orf vaccine. Transboundary and emerging diseases, 68(2), pp. 233-239. Wiley 10.1111/tbed.13619
Brigger, D.; Horn, M. P.; Pennington, L. F.; Powell, A. E.; Siegrist, D.; Weber, B.; Engler, O.; Piezzi, V.; Damonti, L.; Iseli, P.; Hauser, C.; Froehlich, T. K.; Villiger, P. M.; Bachmann, Martin F.; Leib, S. L.; Bittel, P.; Fiedler, M.; Largiadèr, C.; Marschall, J.; Stalder, H.; ... (2021). Accuracy of serological testing for SARS-CoV-2 antibodies: first results of a large mixed-method evaluation study. Allergy, 76(3), pp. 853-865. Wiley 10.1111/all.14608
V'kovski, Philip; Gultom, Mitra; Kelly, Jenna N.; Steiner, Silvio; Russeil, Julie; Mangeat, Bastien; Cora, Elisa; Pezoldt, Joern; Holwerda, Melle; Kratzel, Annika; Laloli, Laura; Wider, Manon; Portmann, Jasmine; Tran, Thao; Ebert, Nadine; Stalder, Hanspeter; Hartmann, Rune; Gardeux, Vincent; Alpern, Daniel; Deplancke, Bart; ... (2021). Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium. PLoS biology, 19(3), e3001158. Public Library of Science 10.1371/journal.pbio.3001158
V'kovski, Philip; Kratzel, Annika; Steiner, Silvio; Stalder, Hanspeter; Thiel, Volker (2021). Coronavirus biology and replication: implications for SARS-CoV-2. Nature reviews. Microbiology, 19(3), pp. 155-170. Springer Nature 10.1038/s41579-020-00468-6
Zhou, Bin; Tran, Thi Nhu Thao; Hoffmann, Donata; Taddeo, Adriano; Ebert, Nadine; Labroussaa, Fabien; Pohlmann, Anne; King, Jacqueline; Steiner, Silvio; Kelly, Jenna N.; Portmann, Jasmine; Halwe, Nico Joel; Ulrich, Lorenz; Trüeb, Bettina Salome; Fan, Xiaoyu; Hoffmann, Bernd; Wang, Li; Thomann, Lisa; Lin, Xudong; Stalder, Hanspeter; ... (2021). SARS-CoV-2 spike D614G change enhances replication and transmission. Nature, 592(7852), pp. 122-127. Springer Nature 10.1038/s41586-021-03361-1
Schweizer, Matthias; Stalder, Hanspeter; Haslebacher, Anja; Grisiger, Martin; Schwermer, Heinzpeter; Di Labio, Elena (2021). Eradication of Bovine Viral Diarrhoea (BVD) in Cattle in Switzerland: Lessons Taught by the Complex Biology of the Virus. Frontiers in veterinary science, 8, p. 702730. Frontiers Media 10.3389/fvets.2021.702730
Huser, Andrea Franziska; Schär, Jessica Grace; Bachofen, Claudia; de Martin, Elena; Portmann, Jasmine; Stalder, Hanspeter; Schweizer, Matthias (2021). Benefit of Bovine Viral Diarrhoea (BVD) Eradication in Cattle on Pestivirus Seroprevalence in Sheep. Frontiers in veterinary science, 8, p. 681559. Frontiers Media 10.3389/fvets.2021.681559
Pfaender, Stephanie; Mar, Katrina B; Michailidis, Eleftherios; Kratzel, Annika; Boys, Ian N; V'kovski, Philip; Fan, Wenchun; Kelly, Jenna N.; Hirt, Dagny; Ebert, Nadine; Stalder, Hanspeter; Kleine-Weber, Hannah; Hoffmann, Markus; Heinrich Hoffmann, H; Saeed, Mohsan; Dijkman, Ronald; Steinmann, Eike; Wight-Carter, Mary; McDougal, Matthew B; Hanners, Natasha W; ... (2020). LY6E impairs coronavirus fusion and confers immune control of viral disease. Nature microbiology, 5(11), pp. 1330-1339. Springer Nature 10.1038/s41564-020-0769-y
Tran, Thi Nhu Thao; Labroussaa, Fabien; Ebert, Nadine; V'kovski, Philip; Stalder, Hanspeter; Portmann, Jasmine; Kelly, Jenna; Steiner, Silvio; Holwerda, Melle; Kratzel, Annika; Gultom, Mitra; Schmied, Kimberly; Laloli, Laura; Hüsser, Linda; Wider, Manon; Pfaender, Stephanie; Hirt, Dagny; Cippà, Valentina; Crespo-Pomar, Silvia; Schröder, Simon; ... (2020). Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform. Nature, 582(7813), pp. 561-565. Springer Nature 10.1038/s41586-020-2294-9
Kaufmann, Cindy; Stalder, Hanspeter; Sidler, Xaver; Renzullo, Sandra; Gurtner, Corinne; Grahofer, Alexander; Schweizer, Matthias (2019). Long-Term Circulation of Atypical Porcine Pestivirus (APPV) within Switzerland. Viruses, 11(7) MDPI 10.3390/v11070653
Holwerda, Melle; Kelly, Jenna; Laloli, Laura; Stürmer, Isabel; Portmann, Jasmine; Stalder, Hanspeter; Dijkman, Ronald (2019). Determining the Replication Kinetics and Cellular Tropism of Influenza D Virus on Primary Well-Differentiated Human Airway Epithelial Cells. Viruses, 11(4) MDPI 10.3390/v11040377
V'kovski, Philip; Gerber, Markus; Kelly, Jenna Nicole; Pfänder, Stephanie; Ebert, Nadine; Braga Lagache, Sophie; Simillion, Cedric; Portmann, Jasmine; Stalder, Hanspeter; Gaschen, Véronique; Bruggmann, Rémy; Stoffel, Michael Hubert; Heller, Manfred; Dijkman, Ronald; Thiel, Volker Earl (2019). Determination of host proteins composing the microenvironment of coronavirus replicase complexes by proximity-labeling. eLife, 8 eLife Sciences Publications 10.7554/eLife.42037
Stalder, Hanspeter; Bachofen, Claudia; Schweizer, Matthias; Zanoni, Reto Giacomo; Sauerländer, Dominik; Peterhans, Ernst (2018). Traces of history conserved over 600 years in the geographic distribution of genetic variants of an RNA virus: Bovine viral diarrhea virus in Switzerland. PLoS ONE, 13(12), e0207604. Public Library of Science 10.1371/journal.pone.0207604
Garcia Nicolas, Obdulio; V'kovski, Philip; Vielle, Nathalie J.; Ebert, Nadine; Züst, R; Portmann, Jasmine; Stalder, Hanspeter; Gaschen, Véronique; Vieyres, G; Stoffel, Michael; Schweizer, Matthias; Summerfield, Artur; Engler, O; Pietschmann, T; Todt, D; Alves, Marco; Thiel, Volker; Pfänder, Stephanie (2018). The small compound inhibitor K22 displays broad antiviral activity against different members of the family Flaviviridae and offers potential as pan-viral inhibitor. Antimicrobial agents and chemotherapy, 62(11) American Society for Microbiology 10.1128/AAC.01206-18
Rappe, Julie Christiane Françoise; de Wilde, Adriaan; Di, Han; Müller, Christin; Stalder, Hanspeter; V'Kovski, Philip; Snijder, Eric; Brinton, Margo A; Ziebuhr, John; Ruggli, Nicolas; Thiel, Volker Earl (2018). Antiviral activity of K22 against members of the order Nidovirales. Virus research, 246, pp. 28-34. Elsevier 10.1016/j.virusres.2018.01.002
Stalder, Hanspeter; Marti, Sabrina; Flückiger, Franziska; Renevey, Nathalie; Hofmann, Martin; Schweizer, Matthias (2017). Complete Genome Sequences of Three Border Disease Virus Strains of the Same Subgenotype, BDSwiss, Isolated from Sheep, Cattle, and Pigs in Switzerland. Genome Announcements, 5(45) American Society for Microbiology 10.1128/genomeA.01238-17
Kindler, Eveline Patricia; Gil-Cruz, Cristina; Spanier, Julia; Li, Yize; Wilhelm, Jochen; Rabouw, Huib H; Züst, Roland; Hwang, Mihyun; V'Kovski, Philip; Stalder, Hanspeter; Marti, Sabrina; Habjan, Matthias; Cervantes-Barragan, Luisa; Elliot, Ruth; Karl, Nadja; Gaughan, Christina; van Kuppeveld, Frank J M; Silverman, Robert H; Keller, Markus; Ludewig, Burkhard; ... (2017). Early endonuclease-mediated evasion of RNA sensing ensures efficient coronavirus replication. PLoS pathogens, 13(2), e1006195. Public Library of Science 10.1371/journal.ppat.1006195
Canal, Cláudio W; Weber, Matheus N; Cibulski, Samuel P; Silva, Mariana S; Puhl, Daniela E; Stalder, Hanspeter; Peterhans, Ernst (2017). A Novel Genetic Group of Bovine Hepacivirus in Archival Serum Samples from Brazilian Cattle. BioMed research international, 2017(4732520), p. 4732520. Hindawi Publishing Corporation 10.1155/2017/4732520
Stalder, Hanspeter; Hug, Corinne; Zanoni, Reto Giacomo; Vogt, Hans-Rudolf; Peterhans, Ernst; Schweizer, Matthias; Bachofen, Claudia (2016). A nationwide database linking information on the hosts with sequence data of their virus strains: A useful tool for the eradication of bovine viral diarrhea (BVD) in Switzerland. Virus research, 218, pp. 49-56. Elsevier 10.1016/j.virusres.2015.09.012
Aeschbacher, Susanne; Santschi, Elisabeth; Gerber, Vinzenz; Stalder, Hanspeter; Zanoni, Reto Giacomo (2015). Entwicklung einer real-time RT-PCR zum Nachweis von equinem Influenzavirus. Schweizer Archiv für Tierheilkunde, 157(4), pp. 191-201. Huber 10.17236/sat00015
Stalder, Hanspeter; Schweizer, Matthias; Bachofen, Claudia (2015). Complete Genome Sequence of a Bovine Viral Diarrhea Virus Subgenotype 1e Strain Isolated in Switzerland. Genome Announcements, 3(3) American Society for Microbiology 10.1128/genomeA.00636-15
Frei, S; Braun, U; Dennler, M; Hilbe, M; Stalder, Hanspeter; Schweizer, Matthias; Nuss, K (2014). Border disease in persistently infected calves: radiological and pathological findings. Veterinary record, 174(7), p. 170. British Veterinary Association 10.1136/vr.102095
Becher, Paul; Fischer, Nicole; Grundhoff, Adam; Stalder, Hanspeter; Schweizer, Matthias; Postel, Alexander (2014). Complete Genome Sequence of Bovine Pestivirus Strain PG-2, a Second Member of the Tentative Pestivirus Species Giraffe. Genome Announcements, 2(3) American Society for Microbiology 10.1128/genomeA.00376-14
Bachofen, Claudia; Bollinger, Barbara; Peterhans, Ernst; Stalder, Hanspeter; Schweizer, Matthias (2013). Diagnostic gap in Bovine viral diarrhea virus serology during the periparturient period in cattle. Journal of veterinary diagnostic investigation, 25(5), pp. 655-661. American Association of Veterinary Laboratory Diagnosticians AAVLD 10.1177/1040638713501172
Bachofen, Claudia; Vogt, Hans-Rudolf; Stalder, Hanspeter; Mathys, Tanja; Zanoni, Reto Giacomo; Hilbe, Monika; Schweizer, Matthias; Peterhans, Ernst (2013). Persistent infections after natural transmission of bovine viral diarrhoea virus from cattle to goats and among goats. Veterinary research, 44(1), p. 32. Editions scientifiques Elsevier 10.1186/1297-9716-44-32
Marques Antunes de Oliveira, Adriano; Stalder, Hanspeter; Peterhans, Ernst; Sauter, Kay Sara; Schweizer, Matthias (2013). Complete genome sequences of both biotypes of a virus pair of bovine viral diarrhea virus subgenotype 1k. Genome Announcements, 1(4), e00287-13. American Society for Microbiology 10.1128/genomeA.00287-13
Bachofen, Claudia; Stalder, Hanspeter; Vogt, Hans-Rudolf; Wegmüller, Michael; Schweizer, Matthias; Zanoni, Reto Giacomo; Peterhans, Ernst (2013). Bovine viral diarrhea (BVD): from biology to control. Berliner und Münchener tierärztliche Wochenschrift, 126(11-12), pp. 452-461. Schlütersche
