08 Faculty of Science > Institute of Applied Physics > Biomedical Photonics

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Number of items at this level: 41.


Schneiter, Martin; Tschanz, Stefan A.; Escher, Anaïs; Müller, Loretta; Frenz, Martin (2023). The Cilialyzer - A freely available open-source software for the analysis of mucociliary activity in respiratory cells. Computer methods and programs in biomedicine, 241, p. 107744. Elsevier 10.1016/j.cmpb.2023.107744

Escher, Anaïs; Kieninger, Elisabeth; De Groof, Susan; Savas, Sibel T; Schneiter, Martin; Tschanz, Stefan A.; Frenz, Martin; Latzin, Philipp; Casaulta, Carmen; Müller, Loretta (2023). In Vitro Effect of Combined Hypertonic Saline and Salbutamol on Ciliary Beating Frequency and Mucociliary Transport in Human Nasal Epithelial Cells of Healthy Volunteers and Patients with Cystic Fibrosis. Journal of aerosol medicine and pulmonary drug delivery, 36(4), pp. 171-180. Mary Ann Liebert 10.1089/jamp.2022.0026

Burri, Christian; Salzmann, Simon; Amstutz, Mylène; Hoffmann, Leonie; Považay, Boris; Meier, Christoph; Frenz, Martin (2023). Investigation of the Influence of Pulse Duration and Application Mode on Microsecond Laser Microsurgery of the Retinal Pigment Epithelium. Life, 13(6), p. 1314. MDPI 10.3390/life13061314

Salemi Yolgunlu, Parisa; Korta Martiartu, Naiara; Gerber, Urs Richard; Frenz, Martin; Jaeger, Michael (2023). Excluding Echo Shift Noise in Real-Time Pulse-Echo Speed-of-Sound Imaging. Sensors, 23(12), p. 5598. Molecular Diversity Preservation International MDPI 10.3390/s23125598


Subochev, Pavel; Spadin, Florentin; Perekatova, Valeriya; Khilov, Aleksandr; Kovalchuk, Andrey; Pavlova, Ksenia; Kurnikov, Alexey; Frenz, Martin; Jaeger, Michael (2022). Toward Real-Time Giga-Voxel Optoacoustic/Photoacoustic Microscopy: GPU-Accelerated Fourier Reconstruction with Quasi-3D Implementation. Photonics, 9(1), p. 15. MDPI 10.3390/photonics9010015

Burn, Andreas; Schneiter, Martin; Ryser, Manuel; Gehr, Peter; Rička, Jaroslav; Frenz, Martin (2022). A quantitative interspecies comparison of the respiratory mucociliary clearance mechanism. European biophysics journal, 51(1), pp. 51-65. Springer 10.1007/s00249-021-01584-8


Stähli, Patrick; Frenz, Martin; Jaeger, Michael (2021). Bayesian Approach for a Robust Speed-of-Sound Reconstruction Using Pulse-Echo Ultrasound. IEEE transactions on medical imaging, 40(2), pp. 457-467. Institute of Electrical and Electronics Engineers IEEE 10.1109/TMI.2020.3029286

Kirchner, Thomas; Frenz, Martin (2021). Multiple illumination learned spectral decoloring for quantitative optoacoustic oximetry imaging. Journal of biomedical optics, 26(08) SPIE International Society for Optical Engineering 10.1117/1.JBO.26.8.085001

Jain, Arushi; Ulrich, Leonie; Jaeger, Michael; Schucht, Philippe; Frenz, Martin; Akarcay, H. Günhan (2021). Backscattering polarimetric imaging of the human brain to determine the orientation and degree of alignment of nerve fiber bundles. Biomedical optics express, 12(7), pp. 4452-4466. Optical Society of America 10.1364/BOE.426491


Spadin, Florentin; Jaeger, Michael; Nuster, Robert; Subochev, Pavel; Frenz, Martin (2020). Quantitative comparison of frequency-domain and delay-and-sum optoacoustic image reconstruction including the effect of coherence factor weighting. Photoacoustics, 17, p. 100149. Elsevier 10.1016/j.pacs.2019.100149

Schneiter, Martin; Rička, Jaroslav; Frenz, Martin (2020). Self-organization of self-clearing beating patterns in an array of locally interacting ciliated cells formulated as an adaptive Boolean network. Theory in biosciences, 139(1), pp. 21-45. Springer 10.1007/s12064-019-00299-x

Mulky, Elias; Fortunato, Giuseppino; Hegemann, Dirk; Sague, Jorge; Heuberger, Roman; Frenz, Martin (2020). Grafting of calcium chelating functionalities onto PLA monofilament fiber surfaces. Biointerphases, 15(1), 011006. American Vacuum Society 10.1116/1.5129989

Jain, Arushi; Maurya, Anjani K.; Ulrich, Leonie; Jaeger, Michael; Rossi, René M.; Neels, Antonia; Schucht, Philippe; Dommann, Alex; Frenz, Martin; Akarçay, Günhan (2020). Polarimetric imaging in backscattering for the structural characterization of strongly scattering birefringent fibrous media. Optics express, 28(11), pp. 16673-16695. Optical Society of America 10.1364/OE.390303

Ulrich, Leonie; Held, Kai Gerrit; Jaeger, Michael; Frenz, Martin; Akarçay, Hidayet Günhan (2020). Reliability assessment for blood oxygen saturation levels measured with optoacoustic imaging. Journal of biomedical optics, 25(04), p. 1. SPIE International Society for Optical Engineering 10.1117/1.JBO.25.4.046005

Stähli, Patrick; Kuriakose, Maju; Frenz, Martin; Jaeger, Michael (2020). Improved forward model for quantitative pulse-echo speed-of-sound imaging. Ultrasonics, 108, p. 106168. Elsevier 10.1016/j.ultras.2020.106168

Jaeger, Michael; Schwab, Hans-Martin; Almallouhi, Yamen; Canal, Celine; Song, Maike; Sauget, Vincent; Sontrop, David; Mulder, Theo; Roumen, Paul; Humblet, Arno; Frenz, Martin; Brands, Peter (2020). Deformation-Compensated Averaging for Deep-Tissue LED and Laser Diode-Based Photoacoustic Imaging Integrated with Handheld Echo Ultrasound. In: Singh, Mithun Kuniyil Ajith (ed.) LED-Based Photoacoustic Imaging. From Bench to Bedside. Progress in Optical Science and Photonics: Vol. 7 (pp. 47-78). Singapore: Springer 10.1007/978-981-15-3984-8_3

Paltauf, Guenther; Nuster, Robert; Frenz, Martin (2020). Progress in biomedical photoacoustic imaging instrumentation toward clinical application. Journal of applied physics, 128(18), p. 180907. American Institute of Physics 10.1063/5.0028190


Maurya, Anjani K.; Weidenbacher, Lukas; Spano, Fabrizio; Fortunato, Giuseppino; Rossi, René M.; Frenz, Martin; Dommann, Alex; Neels, Antonia; Sadeghpour, Amin (2019). Structural insights into semicrystalline states of electrospun nanofibers: a multiscale analytical approach. Nanoscale, 11(15), pp. 7176-7187. Royal Society of Chemistry 10.1039/C9NR00446G

Akarçay, Hidayet Günhan; Hornung, Manes; Jain, Arushi; Frenz, Martin (4 March 2019). Towards the analytical modeling of backscattering polarimetric patterns recorded from multiply scattering systems (Conference Presentation). In: Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI. Proc. SPIE: Vol. 10883 (p. 17). SPIE 10.1117/12.2509366

Hornung, Manes; Jain, Arushi; Frenz, Martin; Akarçay, H. Günhan (2019). Interpretation of backscattering polarimetric images recorded from multiply scattering systems: a study on colloidal suspensions. Optics express, 27(5), pp. 6210-6239. Optical Society of America 10.1364/OE.27.006210

De Niz, Mariana; Spadin, Florentin Samuel; Marti, Matthias; Stein, Jens V.; Frenz, Martin; Frischknecht, Friedrich (2019). Toolbox for In Vivo Imaging of Host–Parasite Interactions at Multiple Scales. Trends in parasitology, 35(3), pp. 193-212. Elsevier 10.1016/j.pt.2019.01.002

Ulrich, Leonie; Ahnen, Linda; Akarçay, Hidayet Günhan; Majos, Salvador Sánchez; Jaeger, Michael; Held, Kai Gerrit; Wolf, Martin; Frenz, Martin (2019). Spectral correction for handheld optoacoustic imaging by means of near-infrared optical tomography in reflection mode. Journal of biophotonics, 12(1), e201800112. Wiley-VCH 10.1002/jbio.201800112

Wiedmer, Linda; Ducray, Angélique; Frenz, Martin; Stoffel, Michael Hubert; Widmer, Hans Rudolf; Mevissen, Meike (2019). Silica nanoparticle-exposure during neuronal differentiation modulates dopaminergic and cholinergic phenotypes in SH-SY5Y cells. Journal of nanobiotechnology, 17(1), p. 46. BioMed Central 10.1186/s12951-019-0482-2


Kuriakose, Maju; Muller, Jan-Willem; Stähli, Patrick; Frenz, Martin; Jaeger, Michael (2018). Receive Beam-Steering and Clutter Reduction for Imaging the Speed-of-Sound Inside the Carotid Artery. Journal of imaging, 4(12), p. 145. MDPI 10.3390/jimaging4120145

Wyss, Fabia; Schneiter, Martin; Hetzel, Udo; Pathologie, FTA; Keller, Saskia; Frenz, Martin; Rička, Jaroslav; Hatt, Jean-Michel (2018). INVESTIGATION OF THE TRACHEAL MUCOCILIARY CLEARANCE IN SNAKES WITH AND WITHOUT BOID INCLUSION BODY DISEASE AND LUNG PATHOLOGY. Journal of zoo and wildlife medicine, 49(1), pp. 223-226. American Association of Zoo Veterinarians 10.1638/2016-0288R1.1

Petrosyan, Tigran; Theodorou, Maria; Bamber, Jeff; Frenz, Martin; Jaeger, Michael (2018). Rapid scanning wide-field clutter elimination in epi-optoacoustic imaging using comb LOVIT. Photoacoustics, 10, pp. 20-30. Elsevier 10.1016/j.pacs.2018.02.001

Caupin, Frédéric; Holten, Vincent; Qiu, Chen; Guillerm, Emmanuel; Wilke, Max; Frenz, Martin; Teixeira, José; Soper, Alan K. (2018). Comment on “Maxima in the thermodynamic response and correlation functions of deeply supercooled water”. Science, 360(6390), eaat1634. American Association for the Advancement of Science 10.1126/science.aat1634


Holten, Vincent; Qiu, Chen; Guillerm, Emmanuel; Wilke, Max; Ricka, Jaroslav; Frenz, Martin; Caupin, Frédéric (2017). Compressibility Anomalies in Stretched Water and Their Interplay with Density Anomalies. The journal of physical chemistry letters, 8(22), pp. 5519-5522. American Chemical Society 10.1021/acs.jpclett.7b02563

Singh, Mithun Kuniyil Ajith; Jaeger, Michael; Frenz, Martin; Steenbergen, Wiendelt (2017). Photoacoustic reflection artifact reduction using photoacoustic-guided focused ultrasound: comparison between plane-wave and element-by-element synthetic backpropagation approach. Biomedical optics express, 8(4), pp. 2245-2260. Optical Society of America 10.1364/BOE.8.002245

Li, David S.; Yoon, Soon Joon; Pelivanov, Ivan; Frenz, Martin; O’Donnell, Matthew; Pozzo, Lilo D. (2017). Polypyrrole-Coated Perfluorocarbon Nanoemulsions as a Sono-Photoacoustic Contrast Agent. Nano letters, 17(10), pp. 6184-6194. American Chemical Society 10.1021/acs.nanolett.7b02845


Kuniyil Ajith Singh, Mithun; Jaeger, Michael; Frenz, Martin; Steenbergen, Wiendelt (2016). Reflection-artifact-free photoacoustic imaging using PAFUSion (photoacoustic-guided focused ultrasound). In: Oraevsky, Alexander A.; Wang, Lihong V. (eds.) Photons Plus Ultrasound: Imaging and Sensing 2016. Proceedings of SPIE: Vol. 9708 (97081R). SPIE 10.1117/12.2212775

Held, Kai Gerrit; Jaeger, Michael; Frenz, Martin; Akarçay, Hidayet Günhan (2016). Spectral correction of OA signals based on multiple irradiation sensing: experimental validation. In: Oraevsky, Alexander A.; Wang, Lihong V. (eds.) Photons Plus Ultrasound: Imaging and Sensing 2016. Proceedings of SPIE: Vol. 9708 (97081E). SPIE 10.1117/12.2214299

Subochev, Pavel; Fiks, Ilya; Frenz, Martin; Turchin, llya (2016). Simultaneous triple-modality imaging of diffuse reflectance, optoacoustic pressure and ultrasonic scattering using an acoustic-resolution photoacoustic microscope: feasibility study. Laser physics letters, 13(2), 025605. IOP Publishing 10.1088/1612-2011/13/2/025605

Singh, Mithun Kuniyil Ajith; Jaeger, Michael; Frenz, Martin; Steenbergen, Wiendelt (2016). In vivo demonstration of reflection artifact reduction in photoacoustic imaging using synthetic aperture photoacoustic-guided focused ultrasound (PAFUSion). Biomedical optics express, 7(8), pp. 2955-2972. Optical Society of America 10.1364/BOE.7.002955

Held, Kai Gerrit; Jaeger, Michael; Ricka, Jaroslav; Frenz, Martin; Akarçay, Hidayet Günhan (2016). Multiple irradiation sensing of the optical effective attenuation coefficient for spectral correction in handheld OA imaging. Photoacoustics, 4(2), pp. 70-80. Elsevier 10.1016/j.pacs.2016.05.004

Preisser, Stefan; Held, Kai Gerrit; Akarçay, Hidayet Günhan; Jaeger, Michael; Frenz, Martin (2016). Study of clutter origin in in-vivo epi-optoacoustic imaging of human forearms. Journal of optics, 18(9), 094003. IOP Publishing 10.1088/2040-8978/18/9/094003

Qiu, Chen; Krüger, Yves; Wilke, M.; Marti, D.; Ricka, Jaroslav; Frenz, Martin (2016). Exploration of the phase diagram of liquid water in the low-temperature metastable region using synthetic fluid inclusions. Physical Chemistry Chemical Physics, 18(40), pp. 28227-28241. Royal Society of Chemistry 10.1039/C6CP04250C

Theodorou, Maria; Jaeger, Michael; Fromageau, Jeremie; Petrosyan, Tigran; Meng-Xing, Tang; Frenz, Martin; Bamber, Jeffrey (2016). Single transducer LOVIT-enabled photoacoustic imaging: A feasibility study. In: 2016 IEEE International Ultrasonics Symposium (IUS) (pp. 1-4). IEEE 10.1109/ULTSYM.2016.7728445


Jaeger, Michael; Held, Kai Gerrit; Peeters, Sara Elisa; Preisser, Stefan; Grünig, Michael; Frenz, Martin (2015). Computed Ultrasound Tomography in Echo Mode for Imaging Speed of Sound Using Pulse-Echo Sonography: Proof of Principle. Ultrasound in medicine & biology, 41(1), pp. 235-250. Elsevier 10.1016/j.ultrasmedbio.2014.05.019

Jaeger, Michael; Frenz, Martin (2015). Towards clinical computed ultrasound tomography in echo-mode: Dynamic range artefact reduction. Ultrasonics, 62, pp. 299-304. Elsevier 10.1016/j.ultras.2015.06.003

Jaeger, Michael; Robinson, Elise; Akarçay, Hidayet Günhan; Frenz, Martin (2015). Full correction for spatially distributed speed-of-sound in echo ultrasound based on measuring aberration delays via transmit beam steering. Physics in medicine and biology, 60(11), pp. 4497-4515. Institute of Physics Publishing IOP 10.1088/0031-9155/60/11/4497

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