08 Faculty of Science > Institute of Applied Physics > Biomedical Photonics

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Subochev, Pavel; Spadin, Florentin; Perekatova, Valeriya; Khilov, Aleksandr; Kovalchuk, Andrey; Pavlova, Ksenia; Kurnikov, Alexey; Frenz, Martin; Jaeger, Michael (2022). Toward Real-Time Giga-Voxel Optoacoustic/Photoacoustic Microscopy: GPU-Accelerated Fourier Reconstruction with Quasi-3D Implementation. Photonics, 9(1), p. 15. MDPI 10.3390/photonics9010015

Burn, Andreas; Schneiter, Martin; Ryser, Manuel; Gehr, Peter; Rička, Jaroslav; Frenz, Martin (2022). A quantitative interspecies comparison of the respiratory mucociliary clearance mechanism. European biophysics journal, 51(1), pp. 51-65. Springer 10.1007/s00249-021-01584-8

Stähli, Patrick; Frenz, Martin; Jaeger, Michael (2021). Bayesian Approach for a Robust Speed-of-Sound Reconstruction Using Pulse-Echo Ultrasound. IEEE transactions on medical imaging, 40(2), pp. 457-467. Institute of Electrical and Electronics Engineers IEEE 10.1109/TMI.2020.3029286

Kirchner, Thomas; Frenz, Martin (2021). Multiple illumination learned spectral decoloring for quantitative optoacoustic oximetry imaging. Journal of biomedical optics, 26(08) SPIE International Society for Optical Engineering 10.1117/1.JBO.26.8.085001

Jain, Arushi; Ulrich, Leonie; Jaeger, Michael; Schucht, Philippe; Frenz, Martin; Akarcay, H. Günhan (2021). Backscattering polarimetric imaging of the human brain to determine the orientation and degree of alignment of nerve fiber bundles. Biomedical optics express, 12(7), pp. 4452-4466. Optical Society of America 10.1364/BOE.426491

Spadin, Florentin; Jaeger, Michael; Nuster, Robert; Subochev, Pavel; Frenz, Martin (2020). Quantitative comparison of frequency-domain and delay-and-sum optoacoustic image reconstruction including the effect of coherence factor weighting. Photoacoustics, 17, p. 100149. Elsevier 10.1016/j.pacs.2019.100149

Schneiter, Martin; Rička, Jaroslav; Frenz, Martin (2020). Self-organization of self-clearing beating patterns in an array of locally interacting ciliated cells formulated as an adaptive Boolean network. Theory in biosciences, 139(1), pp. 21-45. Springer 10.1007/s12064-019-00299-x

Mulky, Elias; Fortunato, Giuseppino; Hegemann, Dirk; Sague, Jorge; Heuberger, Roman; Frenz, Martin (2020). Grafting of calcium chelating functionalities onto PLA monofilament fiber surfaces. Biointerphases, 15(1), 011006. American Vacuum Society 10.1116/1.5129989

Jain, Arushi; Maurya, Anjani K.; Ulrich, Leonie; Jaeger, Michael; Rossi, René M.; Neels, Antonia; Schucht, Philippe; Dommann, Alex; Frenz, Martin; Akarçay, Günhan (2020). Polarimetric imaging in backscattering for the structural characterization of strongly scattering birefringent fibrous media. Optics express, 28(11), pp. 16673-16695. Optical Society of America 10.1364/OE.390303

Ulrich, Leonie; Held, Kai Gerrit; Jaeger, Michael; Frenz, Martin; Akarçay, Hidayet Günhan (2020). Reliability assessment for blood oxygen saturation levels measured with optoacoustic imaging. Journal of biomedical optics, 25(04), p. 1. SPIE International Society for Optical Engineering 10.1117/1.JBO.25.4.046005

Stähli, Patrick; Kuriakose, Maju; Frenz, Martin; Jaeger, Michael (2020). Improved forward model for quantitative pulse-echo speed-of-sound imaging. Ultrasonics, 108, p. 106168. Elsevier 10.1016/j.ultras.2020.106168

Jaeger, Michael; Schwab, Hans-Martin; Almallouhi, Yamen; Canal, Celine; Song, Maike; Sauget, Vincent; Sontrop, David; Mulder, Theo; Roumen, Paul; Humblet, Arno; Frenz, Martin; Brands, Peter (2020). Deformation-Compensated Averaging for Deep-Tissue LED and Laser Diode-Based Photoacoustic Imaging Integrated with Handheld Echo Ultrasound. In: Singh, Mithun Kuniyil Ajith (ed.) LED-Based Photoacoustic Imaging. From Bench to Bedside. Progress in Optical Science and Photonics: Vol. 7 (pp. 47-78). Singapore: Springer 10.1007/978-981-15-3984-8_3

Paltauf, Guenther; Nuster, Robert; Frenz, Martin (2020). Progress in biomedical photoacoustic imaging instrumentation toward clinical application. Journal of applied physics, 128(18), p. 180907. American Institute of Physics 10.1063/5.0028190

Maurya, Anjani K.; Weidenbacher, Lukas; Spano, Fabrizio; Fortunato, Giuseppino; Rossi, René M.; Frenz, Martin; Dommann, Alex; Neels, Antonia; Sadeghpour, Amin (2019). Structural insights into semicrystalline states of electrospun nanofibers: a multiscale analytical approach. Nanoscale, 11(15), pp. 7176-7187. Royal Society of Chemistry 10.1039/C9NR00446G

Akarçay, Hidayet Günhan; Hornung, Manes; Jain, Arushi; Frenz, Martin (4 March 2019). Towards the analytical modeling of backscattering polarimetric patterns recorded from multiply scattering systems (Conference Presentation). In: Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI. Proc. SPIE: Vol. 10883 (p. 17). SPIE 10.1117/12.2509366

Hornung, Manes; Jain, Arushi; Frenz, Martin; Akarçay, H. Günhan (2019). Interpretation of backscattering polarimetric images recorded from multiply scattering systems: a study on colloidal suspensions. Optics express, 27(5), pp. 6210-6239. Optical Society of America 10.1364/OE.27.006210

De Niz, Mariana; Spadin, Florentin Samuel; Marti, Matthias; Stein, Jens V.; Frenz, Martin; Frischknecht, Friedrich (2019). Toolbox for In Vivo Imaging of Host–Parasite Interactions at Multiple Scales. Trends in parasitology, 35(3), pp. 193-212. Elsevier 10.1016/j.pt.2019.01.002

Ulrich, Leonie; Ahnen, Linda; Akarçay, Hidayet Günhan; Majos, Salvador Sánchez; Jaeger, Michael; Held, Kai Gerrit; Wolf, Martin; Frenz, Martin (2019). Spectral correction for handheld optoacoustic imaging by means of near-infrared optical tomography in reflection mode. Journal of biophotonics, 12(1), e201800112. Wiley-VCH 10.1002/jbio.201800112

Wiedmer, Linda; Ducray, Angélique; Frenz, Martin; Stoffel, Michael Hubert; Widmer, Hans Rudolf; Mevissen, Meike (2019). Silica nanoparticle-exposure during neuronal differentiation modulates dopaminergic and cholinergic phenotypes in SH-SY5Y cells. Journal of nanobiotechnology, 17(1), p. 46. BioMed Central 10.1186/s12951-019-0482-2

Kuriakose, Maju; Muller, Jan-Willem; Stähli, Patrick; Frenz, Martin; Jaeger, Michael (2018). Receive Beam-Steering and Clutter Reduction for Imaging the Speed-of-Sound Inside the Carotid Artery. Journal of imaging, 4(12), p. 145. MDPI 10.3390/jimaging4120145

Wyss, Fabia; Schneiter, Martin; Hetzel, Udo; Pathologie, FTA; Keller, Saskia; Frenz, Martin; Rička, Jaroslav; Hatt, Jean-Michel (2018). INVESTIGATION OF THE TRACHEAL MUCOCILIARY CLEARANCE IN SNAKES WITH AND WITHOUT BOID INCLUSION BODY DISEASE AND LUNG PATHOLOGY. Journal of zoo and wildlife medicine, 49(1), pp. 223-226. American Association of Zoo Veterinarians 10.1638/2016-0288R1.1

Petrosyan, Tigran; Theodorou, Maria; Bamber, Jeff; Frenz, Martin; Jaeger, Michael (2018). Rapid scanning wide-field clutter elimination in epi-optoacoustic imaging using comb LOVIT. Photoacoustics, 10, pp. 20-30. Elsevier 10.1016/j.pacs.2018.02.001

Caupin, Frédéric; Holten, Vincent; Qiu, Chen; Guillerm, Emmanuel; Wilke, Max; Frenz, Martin; Teixeira, José; Soper, Alan K. (2018). Comment on “Maxima in the thermodynamic response and correlation functions of deeply supercooled water”. Science, 360(6390), eaat1634. American Association for the Advancement of Science 10.1126/science.aat1634

Holten, Vincent; Qiu, Chen; Guillerm, Emmanuel; Wilke, Max; Ricka, Jaroslav; Frenz, Martin; Caupin, Frédéric (2017). Compressibility Anomalies in Stretched Water and Their Interplay with Density Anomalies. The journal of physical chemistry letters, 8(22), pp. 5519-5522. American Chemical Society 10.1021/acs.jpclett.7b02563

Singh, Mithun Kuniyil Ajith; Jaeger, Michael; Frenz, Martin; Steenbergen, Wiendelt (2017). Photoacoustic reflection artifact reduction using photoacoustic-guided focused ultrasound: comparison between plane-wave and element-by-element synthetic backpropagation approach. Biomedical optics express, 8(4), pp. 2245-2260. Optical Society of America 10.1364/BOE.8.002245

Li, David S.; Yoon, Soon Joon; Pelivanov, Ivan; Frenz, Martin; O’Donnell, Matthew; Pozzo, Lilo D. (2017). Polypyrrole-Coated Perfluorocarbon Nanoemulsions as a Sono-Photoacoustic Contrast Agent. Nano letters, 17(10), pp. 6184-6194. American Chemical Society 10.1021/acs.nanolett.7b02845

Kuniyil Ajith Singh, Mithun; Jaeger, Michael; Frenz, Martin; Steenbergen, Wiendelt (2016). Reflection-artifact-free photoacoustic imaging using PAFUSion (photoacoustic-guided focused ultrasound). In: Oraevsky, Alexander A.; Wang, Lihong V. (eds.) Photons Plus Ultrasound: Imaging and Sensing 2016. Proceedings of SPIE: Vol. 9708 (97081R). SPIE 10.1117/12.2212775

Held, Kai Gerrit; Jaeger, Michael; Frenz, Martin; Akarçay, Hidayet Günhan (2016). Spectral correction of OA signals based on multiple irradiation sensing: experimental validation. In: Oraevsky, Alexander A.; Wang, Lihong V. (eds.) Photons Plus Ultrasound: Imaging and Sensing 2016. Proceedings of SPIE: Vol. 9708 (97081E). SPIE 10.1117/12.2214299

Subochev, Pavel; Fiks, Ilya; Frenz, Martin; Turchin, llya (2016). Simultaneous triple-modality imaging of diffuse reflectance, optoacoustic pressure and ultrasonic scattering using an acoustic-resolution photoacoustic microscope: feasibility study. Laser physics letters, 13(2), 025605. IOP Publishing 10.1088/1612-2011/13/2/025605

Singh, Mithun Kuniyil Ajith; Jaeger, Michael; Frenz, Martin; Steenbergen, Wiendelt (2016). In vivo demonstration of reflection artifact reduction in photoacoustic imaging using synthetic aperture photoacoustic-guided focused ultrasound (PAFUSion). Biomedical optics express, 7(8), pp. 2955-2972. Optical Society of America 10.1364/BOE.7.002955

Held, Kai Gerrit; Jaeger, Michael; Ricka, Jaroslav; Frenz, Martin; Akarçay, Hidayet Günhan (2016). Multiple irradiation sensing of the optical effective attenuation coefficient for spectral correction in handheld OA imaging. Photoacoustics, 4(2), pp. 70-80. Elsevier 10.1016/j.pacs.2016.05.004

Preisser, Stefan; Held, Kai Gerrit; Akarçay, Hidayet Günhan; Jaeger, Michael; Frenz, Martin (2016). Study of clutter origin in in-vivo epi-optoacoustic imaging of human forearms. Journal of optics, 18(9), 094003. IOP Publishing 10.1088/2040-8978/18/9/094003

Qiu, Chen; Krüger, Yves; Wilke, M.; Marti, D.; Ricka, Jaroslav; Frenz, Martin (2016). Exploration of the phase diagram of liquid water in the low-temperature metastable region using synthetic fluid inclusions. Physical Chemistry Chemical Physics, 18(40), pp. 28227-28241. Royal Society of Chemistry 10.1039/C6CP04250C

Theodorou, Maria; Jaeger, Michael; Fromageau, Jeremie; Petrosyan, Tigran; Meng-Xing, Tang; Frenz, Martin; Bamber, Jeffrey (2016). Single transducer LOVIT-enabled photoacoustic imaging: A feasibility study. In: 2016 IEEE International Ultrasonics Symposium (IUS) (pp. 1-4). IEEE 10.1109/ULTSYM.2016.7728445

Jaeger, Michael; Held, Kai Gerrit; Peeters, Sara Elisa; Preisser, Stefan; Grünig, Michael; Frenz, Martin (2015). Computed Ultrasound Tomography in Echo Mode for Imaging Speed of Sound Using Pulse-Echo Sonography: Proof of Principle. Ultrasound in medicine & biology, 41(1), pp. 235-250. Elsevier 10.1016/j.ultrasmedbio.2014.05.019

Jaeger, Michael; Frenz, Martin (2015). Towards clinical computed ultrasound tomography in echo-mode: Dynamic range artefact reduction. Ultrasonics, 62, pp. 299-304. Elsevier 10.1016/j.ultras.2015.06.003

Jaeger, Michael; Robinson, Elise; Akarçay, Hidayet Günhan; Frenz, Martin (2015). Full correction for spatially distributed speed-of-sound in echo ultrasound based on measuring aberration delays via transmit beam steering. Physics in medicine and biology, 60(11), pp. 4497-4515. Institute of Physics Publishing IOP 10.1088/0031-9155/60/11/4497

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