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Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Hassan, Mohsin; Juanola, Oriol; Huber, Stefania; Kellmann, Philipp; Zimmermann, Jakob; Lazzarini, Edoardo; Ganal-Vonarburg, Stephanie C; Gomez de Agüero, Mercedes; Moghadamrad, Sheida (2023). Absence of gut microbiota impairs depletion of Paneth cells but not goblet cells in germ-free Atoh1lox/lox VilCreERT2 mice. American journal of physiology. Gastrointestinal and liver physiology, 324(6), G426-G437. American Physiological Society 10.1152/ajpgi.00123.2022
Kennedy, Katherine M; de Goffau, Marcus C; Perez-Muñoz, Maria Elisa; Arrieta, Marie-Claire; Bäckhed, Fredrik; Bork, Peer; Braun, Thorsten; Bushman, Frederic D; Dore, Joel; de Vos, Willem M; Earl, Ashlee M; Eisen, Jonathan A; Elovitz, Michal A; Ganal-Vonarburg, Stephanie C; Gänzle, Michael G; Garrett, Wendy S; Hall, Lindsay J; Hornef, Mathias W; Huttenhower, Curtis; Konnikova, Liza; ... (2023). Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature, 613(7945), pp. 639-649. Macmillan Journals Ltd. 10.1038/s41586-022-05546-8
Jeckel, Adriana M.; Beran, Franziska; Züst, Tobias; Younkin, Gordon; Petschenka, Georg; Pokharel, Prayan; Dreisbach, Domenic; Ganal-Vonarburg, Stephanie Christine; Robert, Christelle Aurélie Maud (2022). Metabolization and sequestration of plant specialized metabolites in insect herbivores: Current and emerging approaches. Frontiers in physiology, 13(1001032), p. 1001032. Frontiers Research Foundation 10.3389/fphys.2022.1001032
Rohm, Theresa V; Keller, Lena; Bosch, Angela J T; AlAsfoor, Shefaa; Baumann, Zora; Thomas, Amandine; Wiedemann, Sophia J; Steiger, Laura; Dalmas, Elise; Wehner, Josua; Rachid, Leila; Mooser, Catherine; Yilmaz, Bahtiyar; Fernandez Trigo, Nerea; Jauch, Annaise J; Wueest, Stephan; Konrad, Daniel; Henri, Sandrine; Niess, Jan H; Hruz, Petr; ... (2022). Targeting colonic macrophages improves glycemic control in high-fat diet-induced obesity. Communications biology, 5(1), p. 370. Springer Nature 10.1038/s42003-022-03305-z
Mossad, Omar; Batut, Bérénice; Yilmaz, Bahtiyar; Dokalis, Nikolaos; Mezö, Charlotte; Nent, Elisa; Nabavi, Lara Susann; Mayer, Melanie; Maron, Feres José Mocayar; Buescher, Joerg M; Gomez de Agüero, Mercedes; Szalay, Antal; Lämmermann, Tim; Macpherson, Andrew J; Ganal-Vonarburg, Stephanie C; Backofen, Rolf; Erny, Daniel; Prinz, Marco; Blank, Thomas (2022). Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine. Nature neuroscience, 25(3), pp. 295-305. Nature America 10.1038/s41593-022-01027-3
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Murugan, Shaira; Hamley, Jonathan I. D.; Rollenske, Tim; Ganal-Vonarburg, Stephanie C.; Büchi, Isabel; Keogh, Adrian; Li, Hai; Salm, Lilian; Spari, Daniel; Yilmaz, Bahtiyar; Zimmermann, Jakob; Gerfin, Michael; Roldan, Edgar; Beldi, Guido (2021). Regular testing of asymptomatic healthcare workers identifies cost-efficient SARS-CoV-2 preventive measures. PLoS ONE, 16(11), e0258700. Public Library of Science 10.1371/journal.pone.0258700
Kalbermatter, Cristina Lisa; Fernandez Trigo, Nerea; Christensen, Sandro; Ganal-Vonarburg, Stephanie Christine (2021). Maternal Microbiota, Early Life Colonization and Breast Milk Drive Immune Development in the Newborn. Frontiers in immunology, 12(683022), p. 683022. Frontiers Research Foundation 10.3389/fimmu.2021.683022
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Pownall, William Robert; Imhof, Dennis; Fernandez Trigo, Nerea; Ganal-Vonarburg, Stephanie C.; Plattet, Philippe; Monney, Camille; Forterre, Franck; Hemphill, Andrew; Oevermann, Anna (2021). Safety of a Novel Listeria monocytogenes-Based Vaccine Vector Expressing NcSAG1 (Neospora caninum Surface Antigen 1). Frontiers in cellular and infection microbiology, 11(675219), p. 675219. Frontiers 10.3389/fcimb.2021.675219
Li, Hai; Limenitakis, Julien Periclis Jean; Greiff, Victor; Yilmaz, Bahtiyar; Schären, Olivier Pascal; Urbaniak, Camilla; Zünd, Mirjam; Lawson, Melissa; Young, Ian D.; Rupp, Sandra; Heikenwälder, Mathias; McCoy, Kathleen; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2020). Mucosal or systemic microbiota exposures shape the B cell repertoire. Nature, 584(7820), pp. 274-278. Springer Nature 10.1038/s41586-020-2564-6
Mezö, Charlotte; Dokalis, Nikolaos; Mossad, Omar; Staszewski, Ori; Neuber, Jana; Yilmaz, Bahtiyar; Schnepf, Daniel; Gomez de Agüero, Mercedes; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J.; Meyer-Luehmann, Melanie; Staeheli, Peter; Blank, Thomas; Prinz, Marco; Erny, Daniel (2020). Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer's disease. Acta neuropathologica communications, 8(1), p. 119. BioMed Central 10.1186/s40478-020-00988-5
Roder, Thomas; Wüthrich, Daniel; Bär, Cornelia; Sattari, Zahra; Ah, Ueli von; Ronchi, Francesca; Macpherson, Andrew; Ganal-Vonarburg, Stephanie C.; Bruggmann, Rémy; Vergères, Guy (2020). In Silico Comparison Shows that the Pan-Genome of a Dairy-Related Bacterial Culture Collection Covers Most Reactions Annotated to Human Microbiomes. Microorganisms, 8(7) MDPI 10.3390/microorganisms8070966
Schaupp, Laura; Muth, Sabine; Rogell, Leif; Kofoed-Branzk, Michael; Melchior, Felix; Lienenklaus, Stefan; Ganal-Vonarburg, Stephanie C.; Klein, Matthias; Guendel, Fabian; Hain, Tobias; Schütze, Kristian; Grundmann, Ulrike; Schmitt, Vanessa; Dorsch, Martina; Spanier, Julia; Larsen, Pia-Katharina; Schwanz, Thomas; Jäckel, Sven; Reinhardt, Christoph; Bopp, Tobias; ... (2020). Microbiota-Induced Type I Interferons Instruct a Poised Basal State of Dendritic Cells. Cell, 181(5), 1080-1096.e19. Cell Press 10.1016/j.cell.2020.04.022
Ganal-Vonarburg, Stephanie C.; Hornef, Mathias W; Macpherson, Andrew J. (2020). Microbial-host molecular exchange and its functional consequences in early mammalian life. Science, 368(6491), pp. 604-607. American Association for the Advancement of Science 10.1126/science.aba0478
Ganal-Vonarburg, Stephanie C.; Duerr, Claudia U (2020). The interaction of intestinal microbiota and innate lymphoid cells in health and disease throughout life. Immunology, 159(1), pp. 39-51. Wiley-Blackwell 10.1111/imm.13138
Mooser, Catherine; Ganal-Vonarburg, Stephanie Christine (2019). Microbiota as a cornerstone in the development of primary sclerosing cholangitis: paving the path for translational diagnostic and therapeutic approaches. Gut, 68(8), pp. 1353-1355. BMJ Publishing Group 10.1136/gutjnl-2019-318487
Grootjans, Joep; Krupka, Niklas; Hosomi, Shuhei; Matute, Juan D.; Hanley, Thomas; Saveljeva, Svetlana; Gensollen, Thomas; Heijmans, Jarom; Li, Hai; Limenitakis, Julien P.; Ganal-Vonarburg, Stephanie C.; Suo, Shengbao; Luoma, Adrienne M.; Shimodaira, Yosuke; Duan, Jinzhi; Shih, David Q.; Conner, Margaret E.; Glickman, Jonathan N.; Fuhler, Gwenny M.; Palm, Noah W.; ... (2019). Epithelial endoplasmic reticulum stress orchestrates a protective IgA response. Science, 363(6430), pp. 993-998. American Association for the Advancement of Science 10.1126/science.aat7186
Uchimura, Yasuhiro; Fuhrer, Tobias; Li, Hai; Lawson, Melissa A.; Zimmermann, Michael; Yilmaz, Bahtiyar; Zindel, Joel; Ronchi, Francesca; Sorribas Olivera, Marcel; Hapfelmeier, Siegfried; Ganal-Vonarburg, Stephanie C.; Gomez de Agüero, Mercedes; McCoy, Kathleen D.; Sauer, Uwe; Macpherson, Andrew J. (2018). Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response. Immunity, 49(3), 545-559.e5. Cell Press 10.1016/j.immuni.2018.08.004
Bauché, David; Joyce-Shaikh, Barbara; Jain, Renu; Grein, Jeff; Ku, Karin S; Blumenschein, Wendy M; Ganal-Vonarburg, Stephanie C.; Wilson, Douglas C; McClanahan, Terrill K; Malefyt, Rene de Waal; Macpherson, Andrew J.; Annamalai, Lakshmanan; Yearley, Jennifer H; Cua, Daniel J (2018). LAG3 Regulatory T Cells Restrain Interleukin-23-Producing CX3CR1 Gut-Resident Macrophages during Group 3 Innate Lymphoid Cell-Driven Colitis. Immunity, 49(2), 342-352.e5. Cell Press 10.1016/j.immuni.2018.07.007
Macpherson, Andrew; Ganal-Vonarburg, Stephanie (2018). IgA-about the unexpected. Journal of experimental medicine, 215(8), pp. 1965-1966. Rockefeller University Press 10.1084/jem.20181153
Mooser, Catherine; Gomez de Agüero Tamargo, Maria de la Mercedes; Ganal-Vonarburg, Stephanie (2018). Standardization in host-microbiota interaction studies: challenges, gnotobiology as a tool, and perspective. Current opinion in microbiology, 44, pp. 50-60. Elsevier 10.1016/j.mib.2018.07.007
Macpherson, Andrew; Ganal-Vonarburg, Stephanie (2018). Checkpoint for gut microbes after birth. Nature, 560(7719), pp. 436-438. Springer 10.1038/d41586-018-05861-z
Macpherson, Andrew; Yilmaz, Bahtiyar; Limenitakis, Julien Periclis Jean; Ganal-Vonarburg, Stephanie (2018). IgA Function in Relation to the Intestinal Microbiota. Annual review of immunology, 36, pp. 359-381. Annual Reviews 10.1146/annurev-immunol-042617-053238
Girard-Madoux, Mathilde J H; Gomez de Agüero Tamargo, Maria de la Mercedes; Ganal-Vonarburg, Stephanie; Mooser, Catherine; Belz, Gabrielle T; Macpherson, Andrew; Vivier, Eric (2018). The immunological functions of the Appendix: An example of redundancy? Seminars in immunology, 36, pp. 31-44. Elsevier 10.1016/j.smim.2018.02.005
Macpherson, Andrew; Gomez de Agüero Tamargo, Maria de la Mercedes; Ganal-Vonarburg, Stephanie (2017). How nutrition and the maternal microbiota shape the neonatal immune system. Nature reviews - immunology, 17(8), pp. 508-517. Nature Publishing Group 10.1038/nri.2017.58
Macpherson, Andrew; Heikenwalder, Mathias; Ganal-Vonarburg, Stephanie (2016). The Liver at the Nexus of Host-Microbial Interactions. Cell host & microbe, 20(5), pp. 561-571. Elsevier 10.1016/j.chom.2016.10.016
Ganal-Vonarburg, Stephanie; Macpherson, Andrew (2016). Our Mothers' Antibodies as Guardians of our Commensals. Trends in molecular medicine, 22(9), pp. 739-741. Cell Press 10.1016/j.molmed.2016.06.010
Gomez de Agüero Tamargo, Maria de la Mercedes; Ganal-Vonarburg, Stephanie C; Fuhrer, Tobias; Rupp, Sandra Carina; Uchimura, Yasuhiro; Li, Hai; Steinert, Anna; Heikenwalder, Mathias; Hapfelmeier, Siegfried Hektor; Sauer, Uwe; McCoy, Kathleen; Macpherson, Andrew (2016). The maternal microbiota drives early postnatal innate immune development. Science, 351(6279), pp. 1296-1302. American Association for the Advancement of Science 10.1126/science.aad2571
Li, Hai; Limenitakis, Julien Periclis Jean; Ganal, Stephanie; Macpherson, Andrew (2015). Penetrability of the inner mucus layer: who is out there? EMBO reports, 16(2), pp. 127-129. Nature Publishing Group 10.15252/embr.201439943
Ganal, Stephanie; Macpherson, Andrew (2014). An ambulance for retinol. eLife, 3(e04246), e04246. eLife Sciences Publications 10.7554/eLife.04246
Kalbermatter, Cristina; Fernandez Trigo, Nerea; Ganal-Vonarburg, Stephanie C. (2020). Microbiota and immunity in the newborn. Pharmakon, 8(6), pp. 412-418. Avoxa, Mediengruppe Deutscher Apotheker 10.1691/pn.20200041
Ganal, Stephanie (1 October 2015). Early postnatal immune development by maternal microbiota (Unpublished). In: SGG Annual Meeting. Interlaken. 1.10.2015.
Ganal, Stephanie (17 July 2015). Maternal microbiota-derived metabolites shaping the neonatal immune system are transferred to the offspring ante- and postnatally (Unpublished). In: International Congress of Mucosal Immunology (ICMI). Berlin. 14.-18.07.2015.
Ganal, Stephanie; Gomez de Agüero Tamargo, Maria de la Mercedes (5 June 2015). Role of maternal microbiota in modulating gene expression and immunity in the neonatal intestine (Unpublished). In: Genomics Day. Bern. 05.06.2015.
Ganal, Stephanie (4 December 2014). Outside-in and inside-out compartmentalisation of antibody responses to the commensal intestinal microbiota (Unpublished). In: Zürich Immunology Meeting. 04.12.2014.
Ganal, Stephanie (3 April 2014). Characterization of maternal microbiota-dependent imprinting of the neonatal immune system (Unpublished). In: Zürich Immunology Meeting. 03.04.2014.
Ganal, Stephanie (January 2014). Characterization of maternal microbiota-dependent imprinting of the neonatal immune system (Unpublished). In: SINERGIA Retreat. 20.01.-21.01.2014.
