Cavassini, Matthias

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Journal Article

Nguyen, Huyen; Thorball, Christian W; Fellay, Jacques; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Kusjeko, Katharina; Bachmann, Nadine; Chaudron, Sandra E; Paioni, Paolo; Thurnheer Zürcher, Maria Christine; Battegay, Manuel; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger (2019). HIV transmission chains exhibit greater HLA-B homogeneity than randomly expected. Journal of acquired immune deficiency syndromes JAIDS, 81(5), pp. 508-515. Lippincott Williams & Wilkins 10.1097/QAI.0000000000002077

Kusejko, Katharina; Bachmann, Nadine; Chaudron, Sandra E; Nguyen, Huyen; Braun, Dominique L; Hampel, Benjamin; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Rauch, Andri; Günthard, Huldrych F; Kouyos, Roger D (2019). A systematic phylogenetic approach to study the interaction of HIV-1 with coinfections, non-communicable and opportunistic diseases. The journal of infectious diseases, 220(2), pp. 244-253. Oxford University Press 10.1093/infdis/jiz093

Carlisle, Louisa A; Turk, Teja; Kusejko, Katharina; Metzner, Karin J; Leemann, Christine; Schenkel, Corinne; Bachmann, Nadine; Posada, Susana; Beerenwinkel, Niko; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Braun, Dominique L; Rauch, Andri; Calmy, Alexandra; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro; Bernasconi, Enos; ... (2019). Viral diversity from next-generation sequencing of HIV-1 samples provides precise estimates of infection recency and time since infection. The journal of infectious diseases, 220(2), pp. 254-265. Oxford University Press 10.1093/infdis/jiz094

Salazar Vizcaya, Luisa Paola; Kouyos, Roger D; Metzner, Karin J; Caraballo Cortes, Kamila; Böni, Jürg; Shah, Cyril; Fehr, Jan; Braun, Dominique L; Bernasconi, Enos; Mbunkah, Herbert A; Hoffmann, Matthias; Labhardt, Niklaus; Cavassini, Matthias; Rougemont, Mathieu; Günthard, Huldrych F; Keiser, Olivia; Rauch, Andri (2019). Changing trends in international versus domestic HCV transmission in HIV-positive MSM: A perspective for the DAA scale-up era. The journal of infectious diseases, 220(1), pp. 91-99. Oxford University Press 10.1093/infdis/jiz069

Dietrich, Léna G; Barceló, Catalina; Thorball, Christian W; Ryom, Lene; Burkhalter, Felix; Hasse, Barbara; Furrer, Hansjakob; Weisser, Maja; Steffen, Ana; Bernasconi, Enos; Cavassini, Matthias; de Seigneux, Sophie; Csajka, Chantal; Fellay, Jacques; Ledergerber, Bruno; Tarr, Philip E (2019). Contribution of genetic background and clinical D:A:D risk score to chronic kidney disease in Swiss HIV-positive persons with normal baseline estimated glomerular filtration rate. (In Press). Clinical infectious diseases Oxford University Press 10.1093/cid/ciz280

Abela, Irene A; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Hirsch, Hans H; Furrer, Hansjakob; Calmy, Alexandra; Schmid, Patrick; Cavassini, Matthias; Bernasconi, Enos; Günthard, Huldrych F (2019). Emergence of drug resistance in the Swiss HIV Cohort Study under potent antiretroviral therapy is observed in socially disadvantaged patients. (In Press). Clinical infectious diseases Oxford University Press 10.1093/cid/ciz178

Leon-Reyes, Selene; Schäfer, Juliane; Früh, Mathias; Schwenkglenks, Matthias; Reich, Oliver; Schmidlin, Kurt; Staehelin, Cornelia; Battegay, Manuel; Cavassini, Matthias; Hasse, Barbara; Bernasconi, Enos; Calmy, Alexandra; Hoffmann, Matthias; Schoeni-Affolter, Franziska; Zhao, Hongwei; Bucher, Heiner C (2019). Cost estimates for HIV care and patient characteristics for health resource utilisation from linkage of claims data with the Swiss HIV Cohort Study. Clinical infectious diseases, 68(5), pp. 827-833. The University of Chicago Press 10.1093/cid/ciy564

Bibert, Stéphanie; Wójtowicz, Agnieszka; Taffé, Patrick; Tarr, Philip E; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Hoffmann, Matthias; Kaiser, Laurent; Osthoff, Michael; Fellay, Jacques; Cavassini, Matthias; Bochud, Pierre-Yves (2018). Interferon lambda 3/4 polymorphisms are associated with AIDS-related Kaposi's sarcoma. AIDS, 32(18), pp. 2759-2765. Lippincott Williams & Wilkins 10.1097/QAD.0000000000002004

Kouyos, Roger D; Rusert, Peter; Kadelka, Claus; Huber, Michael; Marzel, Alex; Ebner, Hanna; Schanz, Merle; Liechti, Thomas; Friedrich, Nikolas; Braun, Dominique L; Scherrer, Alexandra U; Weber, Jacqueline; Uhr, Therese; Baumann, Nicolas S; Leemann, Christine; Kuster, Herbert; Chave, Jean-Philippe; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; ... (2018). Tracing HIV-1 strains that imprint broadly neutralizing antibody responses. Nature, 561(7723), pp. 406-410. Macmillan Journals Ltd. 10.1038/s41586-018-0517-0

Salazar-Vizcaya, Luisa; Wandeler, Gilles; Fehr, Jan; Braun, Dominique; Cavassini, Matthias; Stoeckle, Marcel; Bernasconi, Enos; Hoffmann, Matthias; Rougemont, Mathieu; Béguelin, Charles; Rauch, Andri (2018). Impact of Direct-Acting Antivirals on the Burden of HCV Infection Among Persons Who Inject Drugs and Men Who Have Sex With Men in the Swiss HIV Cohort Study. Open Forum Infectious Diseases, 5(7), ofy154. Oxford University Press 10.1093/ofid/ofy154

Kusejko, Katharina; Kadelka, Claus; Marzel, Alex; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Rauch, Andri; Günthard, Huldrych F; Kouyos, Roger D (2018). Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study. Virus evolution, 4(2), vey024. Oxford University Press 10.1093/ve/vey024

Kadelka, Claus; Liechti, Thomas; Ebner, Hanna; Schanz, Merle; Rusert, Peter; Friedrich, Nikolas; Stiegeler, Emanuel; Braun, Dominique L; Huber, Michael; Scherrer, Alexandra U; Weber, Jacqueline; Uhr, Therese; Kuster, Herbert; Misselwitz, Benjamin; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; ... (2018). Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity. Journal of experimental medicine, 215(6), pp. 1589-1608. Rockefeller University Press 10.1084/jem.20180246

Marzel, Alex; Kusejko, Katharina; Weber, Rainer; Bruggmann, Philip; Rauch, Andri; Roth, Jan A; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Günthard, Huldrych F; Kouyos, Roger D (2018). The Cumulative Impact of Harm Reduction on the Swiss HIV Epidemic: Cohort Study, Mathematical Model, and Phylogenetic Analysis. Open Forum Infectious Diseases, 5(5), ofy078. Oxford University Press 10.1093/ofid/ofy078

Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; Fellay, Jacques; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Battegay, Manuel; Rauch, Andri; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Schmid, Patrick; Scherrer, Alexandra U; Müller, Viktor; Bonhoeffer, Sebastian; Kouyos, Roger; ... (2018). Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T Cell Decline and Per-Parasite Pathogenicity. Molecular Biology and Evolution, 35(1), pp. 27-37. Oxford University Press 10.1093/molbev/msx246

Turk, Teja; Bachmann, Nadine; Kadelka, Claus; Böni, Jürg; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Furrer, Hansjakob; Hoffmann, Matthias; Günthard, Huldrych F; Kouyos, Roger D (2017). Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis. eLife, 6 eLife Sciences Publications 10.7554/eLife.28721

Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Cavassini, Matthias; Calmy, Alexandra; Vernazza, Pietro; Günthard, Huldrych; Bernasconi, Enos; Battegay, Manuel (2017). Adverse events of raltegravir and dolutegravir. AIDS, 31(13), pp. 1853-1858. Lippincott Williams & Wilkins 10.1097/QAD.0000000000001590

Notter, Julia; Frey Tirri, Brigitte; Bally, Frank; Aebi Popp, Karoline; Michal, Yaron; Nadal, David; Cavassini, Matthias; Hauser, Christoph; Vernazza, Pietro; Schmidt, Axel Jeremias; Itin, Peter; Fehr, Jan; Calmy, Alexandra; Low, Nicola; Tarr, Philip (2017). Infections sexuellement transmissibles à Chlamydia trachomatis. Swiss Medical Forum, 17(34), pp. 705-711. EMH Swiss Medical Publishers 10.4414/fms.2017.03020

Sculier, Delphine; Gayet-Ageron, Angèle; Battegay, Manuel; Cavassini, Matthias; Fehr, Jan; Hirzel, Cédric; Schmid, Patrick; Bernasconi, Enos; Calmy, Alexandra (2017). Rilpivirine use in the Swiss HIV cohort study: a prospective cohort study. BMC infectious diseases, 17(1), p. 476. BioMed Central 10.1186/s12879-017-2579-2

Blaser, Nello; Bertisch, Barbara; Kouyos, Roger D; Calmy, Alexandra; Bucher, Heiner C; Cavassini, Matthias; Estill, Janne; Keiser, Olivia; Egger, Matthias; Study, The Swiss HIV Cohort (2017). Impact of screening and antiretroviral therapy on anal cancer incidence in HIV-positive MSM. AIDS, 31(13), pp. 1859-1866. Lippincott Williams & Wilkins 10.1097/QAD.0000000000001546

Béguelin, Charles Antoine; Friolet, Nicole; Moradpour, Darius; Sahli, Roland; Suter, Franziska Marta; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Atkinson, Andrew; Rauch, Andri; Wandeler, Gilles (2017). Impact of tenofovir on hepatitis delta virus replication in the Swiss HIV Cohort Study. Clinical infectious diseases, 64(9), pp. 1275-1278. Oxford University Press 10.1093/cid/cix125

Kamal, Susan; Locatelli, Isabella; Wandeler, Gilles; Sehhat, Asemaneh; Bugnon, Olivier; Metral, Melanie; Du Pasquier, Renaud; Gutbrod, Klemens; Cavassini, Matthias; Schneider, Marie P; Study, The Swiss HIV Cohort (2017). The Presence of Human Immunodeficiency Virus-Associated Neurocognitive Disorders Is Associated With a Lower Adherence to Combined Antiretroviral Treatment. Open Forum Infectious Diseases, 4(2), ofx070. Oxford University Press 10.1093/ofid/ofx070

Combes, Jean-Damien; Clifford, Gary M; Egger, Matthias; Cavassini, Matthias; Hirsch, Hans H; Hauser, Christoph; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Franceschi, Silvia; Waterboer, Tim; Scherrer, Alexandra U; Swiss HIV Cohort, Study (2017). Human papillomavirus antibody response following HAART initiation among MSM. AIDS, 31(4), pp. 561-569. Lippincott Williams & Wilkins 10.1097/QAD.0000000000001354

Güler, Aysel; Moser, André; Calmy, Alexandra; Günthard, Huldrych F; Bernasconi, Enos; Furrer, Hansjakob; Fux, Christoph A; Battegay, Manuel; Cavassini, Matthias; Vernazza, Pietro; Zwahlen, Marcel; Egger, Matthias (2017). Life expectancy in HIV-positive persons in Switzerland: matched comparison with general population. AIDS, 31(3), pp. 427-436. Lippincott Williams & Wilkins 10.1097/QAD.0000000000001335

Schäfer, Juliane; Young, Jim; Calmy, Alexandra; Nicca, Dunja; Hasse, Barbara; Brun del Re, Claudia; Cavassini, Matthias; Bernasconi, Enos; Schmidt-Trucksäss, Arno; Bucher, Heiner C (2017). High prevalence of physical inactivity among patients from the Swiss HIV Cohort Study. AIDS Care-Psychological and Socio-Medical Aspects of AIDS/HIV, 29(8), pp. 1056-1061. Taylor & Francis 10.1080/09540121.2016.1274016

Aouri, Manel; Barcelo, Catalina; Guidi, Monia; Rotger, Margalida; Cavassini, Matthias; Hirzel, Cédric; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal (2017). Population Pharmacokinetics and Pharmacogenetics Analysis of Rilpivirine in HIV-1-Infected Individuals. Antimicrobial agents and chemotherapy, 61(1) American Society for Microbiology 10.1128/AAC.00899-16

Béguelin, Charles Antoine; Moradpour, Darius; Sahli, Roland; Suter, Franziska Marta; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Braun, Dominique; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles (2017). Hepatitis delta-associated mortality in HIV/HBV-coinfected patients. Journal of hepatology, 66(2), pp. 297-303. Elsevier 10.1016/j.jhep.2016.10.007

Kovari, Helen; Rauch, Andri; Kouyos, Roger; Rougemont, Mathieu; Cavassini, Matthias; Schmid, Patrick; Stöckle, Marcel; Bernasconi, Enos; Weber, Rainer; Ledergerber, Bruno (2016). Hepatitis C infection and the risk of non-liver-related morbidity and mortality in HIV-positive persons in the Swiss HIV Cohort Study. Clinical infectious diseases, ciw809. Oxford University Press 10.1093/cid/ciw809

Sauter, Rafael; Huang, Ruizhu; Ledergerber, Bruno; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hoffmann, Matthias; Rougemont, Mathieu; Günthard, Huldrych F; Held, Leonhard (2016). CD4/CD8 ratio and CD8 counts predict CD4 response in HIV-1-infected drug naive and in patients on cART. Medicine, 95(42), e5094. Lippincott Williams & Wilkins 10.1097/MD.0000000000005094

Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; Schanz, Merle; Huber, Michael; Braun, Dominique L; Hozé, Nathanael; Scherrer, Alexandra; Magnus, Carsten; Weber, Jacqueline; Uhr, Therese; Cippa, Valentina; Thorball, Christian W; Kuster, Herbert; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; ... (2016). Determinants of HIV-1 broadly neutralizing antibody induction. Nature medicine, 22(11), pp. 1260-1267. Nature Publishing Group 10.1038/nm.4187

Wandeler, Gilles; Mulenga, Lloyd; Vinikoor, Michael J; Kovari, Helen; Battegay, Manuel; Calmy, Alexandra; Cavassini, Matthias; Bernasconi, Enos; Schmid, Patrick; Bolton-Moore, Carolyn; Sinkala, Edford; Chi, Benjamin H; Egger, Matthias; Rauch, Andri (2016). Liver fibrosis in treatment-naïve HIV-infected and HIV/HBV co-infected patients: Zambia and Switzerland compared. International journal of infectious diseases, 51, pp. 97-102. Elsevier 10.1016/j.ijid.2016.08.028

Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Hauser, Christoph; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F (2016). Successful prevention of transmission of integrase resistance in the Swiss HIV Cohort Study. Journal of infectious diseases, 214(3), pp. 399-402. Oxford University Press 10.1093/infdis/jiw165

Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Furrer, Hansjakob; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F (2016). Emergence of acquired HIV-1 drug resistance has almost been stopped in Switzerland - a 15 year prospective cohort analysis. Clinical infectious diseases, 62(10), pp. 1310-1317. Oxford University Press 10.1093/cid/ciw128

McLaren, Paul J; Raisaro, Jean Louis; Aouri, Manel; Rotger, Margalida; Ayday, Erman; Bartha, István; Delgado, Maria B; Vallet, Yannick; F Günthard, Huldrych; Cavassini, Matthias; Furrer, Hansjakob; Doco-Lecompte, Thanh; Marzolini, Catia; Schmid, Patrick; Di Benedetto, Caroline; Decosterd, Laurent A; Fellay, Jacques; Hubaux, Jean-Pierre; Telenti, Amalio (2016). Privacy-preserving genomic testing in the clinic: a model using HIV treatment. Genetics in medicine, 18(8), pp. 814-822. Palgrave Macmillan 10.1038/gim.2015.167

Marzel, Alex; Shilaih, Mohaned; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Braun, Dominique L; Calmy, Alexandra; Furrer, Hansjakob; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D (2016). HIV-1 Transmission During Recent Infection and During Treatment Interruptions as Major Drivers of New Infections in the Swiss HIV Cohort Study. Clinical infectious diseases, 62(1), pp. 115-122. Oxford University Press 10.1093/cid/civ732

Elzi, Luigia; Conen, Anna; Patzen, Annalea; Fehr, Jan; Cavassini, Matthias; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Furrer, Hansjakob; Battegay, Manuel (2016). Ability to Work and Employment Rates in Human Immunodeficiency Virus (HIV)-1-Infected Individuals Receiving Combination Antiretroviral Therapy: The Swiss HIV Cohort Study. Open Forum Infectious Diseases, 3(1), ofw022. Oxford University Press 10.1093/ofid/ofw022

Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; Schüpbach, Jörg; Böni, Jürg; Yerly, Sabine; Hirsch, Hans H; Aubert, Vincent; Cavassini, Matthias; Klimkait, Thomas; Vernazza, Pietro L; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Kouyos, Roger (2016). Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland. Scientific Reports, 6(27580), p. 27580. Nature Publishing Group 10.1038/srep27580

Darling, Katharine Ea; Hachfeld, Anna; Cavassini, Matthias; Kirk, Ole; Furrer, Hansjakob; Wandeler, Gilles (2016). Late presentation to HIV care despite good access to health services: current epidemiological trends and how to do better. Swiss medical weekly, 146(w14348), w14348. EMH Schweizerischer Ärzteverlag 10.4414/smw.2016.14348

Kohler, Philipp; Schmidt, Axel J; Cavassini, Matthias; Furrer, Hansjakob; Calmy, Alexandra; Battegay, Manuel; Bernasconi, Enos; Ledergerber, Bruno; Vernazza, Pietro (2015). The HIV care cascade in Switzerland: reaching the UNAIDS/WHO targets for patients diagnosed with HIV. AIDS, 29(18), pp. 2509-2515. Lippincott Williams & Wilkins 10.1097/QAD.0000000000000878

Hasse, Barbara; Tarr, Philip E; Marques-Vidal, Pedro; Waeber, Gerard; Preisig, Martin; Mooser, Vincent; Valeri, Fabio; Djalali, Sima; Rauch, Andri; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Battegay, Manuel; Weber, Rainer; Senn, Oliver; Vollenweider, Peter; Ledergerber, Bruno; Aubert, V; Barth, J; ... (2015). Strong Impact of Smoking on Multimorbidity and Cardiovascular Risk Among Human Immunodeficiency Virus-Infected Individuals in Comparison With the General Population. Open Forum Infectious Diseases, 2(3), ofv108. Oxford University Press 10.1093/ofid/ofv108

Bihl, Florian; Martinetti, Gladys; Wandeler, Gilles; Weber, Rainer; Ledergeber, Bruno; Calmy, Alexandra; Battegay, Manuel; Cavassini, Matthias; Vernazza, Pietro; Caminada, Anna-Paola; Rickenbach, Martin; Bernasconi, Enos (2015). HBV genotypes and response to tenofovir disoproxil fumarate in HIV/HBV-coinfected persons. BMC gastroenterology, 15, p. 79. BioMed Central 10.1186/s12876-015-0308-0

Ciaffi, Laura; Cavassini, Matthias; Genne, Daniel; Delhumeau, Cecile; Spycher Elbes, Rachel; Hill, Andrew; Wandeler, Gilles; Fehr, Jan; Stoeckle, Marcel; Schmid, Patrick; Hirschel, Bernard; Montecucco, Fabrizio; Calmy, Alexandra (2015). Switch to etravirine for HIV-positive patients receiving statin treatment: a prospective study. European journal of clinical investigation EJCI, 45(7), pp. 720-730. Wiley-Blackwell 10.1111/eci.12464

Kovari, Helen; Ledergerber, Bruno; Cavassini, Matthias; Ambrosioni, Juan; Bregenzer, Andrea; Stöckle, Marcel; Bernasconi, Enos; Kouyos, Roger; Weber, Rainer; Rauch, Andri (2015). High Hepatic and Extrahepatic Mortality and Low Treatment Uptake in HCV-coinfected Persons in the Swiss HIV Cohort Study between 2001 and 2013. Journal of hepatology, 63(3), pp. 573-580. Elsevier 10.1016/j.jhep.2015.04.019

Young, Jim; Xiao, Yongling; Moodie, Erica E M; Abrahamowicz, Michal; Klein, Marina B; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Cavassini, Matthias; Cusini, Alexia; Weber, Rainer; Bucher, Heiner C (2015). The effect of cumulating exposure to abacavir on the risk of cardiovascular disease events in patients from the Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 69(4), pp. 413-421. Lippincott Williams & Wilkins 10.1097/QAI.0000000000000662

Kouyos, Roger D; Hasse, Barbara; Calmy, Alexandra; Cavassini, Matthias; Furrer, Hansjakob; Stöckle, Marcel; Vernazza, Pietro L; Bernasconi, Enos; Weber, Rainer; Günthard, Huldrych F; Aubert, V; Battegay, M; Bernasconi, E; Böni, J; Bucher, H C; Burton-Jeangros, C; Calmy, A; Cavassini, M; Dollenmaier, G; Egger, M; ... (2015). Increases in Condomless Sex in the Swiss HIV Cohort Study. Open Forum Infectious Diseases, 2(2), ofv077. Oxford University Press 10.1093/ofid/ofv077

Wandeler, Gilles; Schlauri, Marion; Jaquier, Marie-Eve; Rohrbach, Janine; Metzner, Karin J; Fehr, Jan; Ambrosioni, Juan; Cavassini, Matthias; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Keiser, Olivia; Salazar-Vizcaya, Luisa; Furrer, Hansjakob; Rauch, Andri (2015). Incident Hepatitis C Virus Infections in the Swiss HIV Cohort Study: Changes in Treatment Uptake and Outcomes Between 1991 and 2013. Open Forum Infectious Diseases, 2(1), ofv026. Oxford University Press 10.1093/ofid/ofv026

Güler, Aysel; Schöni-Affolter, Franziska; Moser, André; Bertisch, Barbara; Bucher, Heiner C; Calmy, Alexandra; Cavassini, Matthias; Ledergerber, Bruno; Wandeler, Gilles; Egger, Matthias (2015). Neighbourhood socio-economic position, late presentation and outcomes in people living with HIV in Switzerland. AIDS, 29(2), pp. 231-238. Lippincott Williams & Wilkins 10.1097/QAD.0000000000000524

Yang, Wan-Lin; Kouyos, Roger; Scherrer, Alexandra U; Böni, Jürg; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Held, Leonhard; Ledergerber, Bruno; Günthard, Huldrych F (2015). Assessing the paradox between transmitted and acquired HIV-1 drug resistance in the Swiss HIV Cohort Study from 1998 to 2012. Journal of infectious diseases, 212(1), pp. 28-38. Oxford University Press 10.1093/infdis/jiv012

Kovari, Helen; Russmann, Stefan; Ledergerber, Bruno; Müller, Daniel; Rotger, Margalida; Velli, Pablo; Cavassini, Matthias; Ambrosioni, Juan; Bregenzer, Andrea; Stöckle, Marcel; Bernasconi, Enos; Rauch, Andri; Speck, Roberto F (2015). Ribavirin Concentrations Do Not Predict Sustained Virological Response in HIV/HCV-Coinfected Patients Treated with Ribavirin and Pegylated Interferon in the Swiss HIV Cohort Study. PLoS ONE, 10(7), e0133879. Public Library of Science 10.1371/journal.pone.0133879

Young, Jim; Rickenbach, Martin; Calmy, Alexandra; Bernasconi, Enos; Stähelin, Cornelia Johanna; Schmid, Patrick; Cavassini, Matthias; Battegay, Manuel; Günthard, Huldrych F; Bucher, Heiner C (2015). Transient detectable viremia and the risk of viral rebound in patients from the Swiss HIV Cohort Study. BMC infectious diseases, 15(1), p. 382. BioMed Central 10.1186/s12879-015-1120-8

Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Hirzel, Cédric; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Held, Leonhard; Ledergerber, Bruno; Günthard, Huldrych F (2015). Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study. Journal of antimicrobial chemotherapy, 70(12), pp. 3323-3331. Oxford University Press 10.1093/jac/dkv257

Bibert, Stéphanie; Wojtowicz, Agnieszka; Taffé, Patrick; Manuel, Oriol; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Hoffmann, Matthias; Kaiser, Laurent; Osthoff, Michael; Cavassini, Matthias; Bochud, Pierre-Yves (2014). The IFNL3/4 ΔG variant increases susceptibility to cytomegalovirus retinitis among HIV-infected patients. AIDS, 28(13), pp. 1885-1889. Lippincott Williams & Wilkins 10.1097/QAD.0000000000000379

von Braun, Amrei; Furrer, Hansjakob; Battegay, Manuel; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Günthard, Huldrych F (2014). Antiretrovirale Therapie. Therapeutische Umschau, 71(8), pp. 461-468. Huber 10.1024/0040-5930/a000538

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Metzner, Karin J.; Scherrer, Alexandra U.; Von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Hirsch, Hans H.; Vernazza, Pietro L.; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Weber, Rainer; Günthard, Huldrych F. (2014). Limited clinical benefit of minority K103N and Y181C-variant detection in addition to routine genotypic resistance testing in antiretroviral therapy-naive patients. AIDS, 28(15), pp. 2231-2239. Lippincott Williams & Wilkins 10.1097/QAD.0000000000000397

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Arroyo, Diego Andoni; Dick, Florian; Cavassini, Matthias; Guglielmi, Gabriel; Hayoz, Daniel; Do, Dai-Do; Cook, Stéphane (2013). Arterial Hypertension Refractory to Renal Denervation, Abdominal Pain and Claudication: Any Coral’ations? Cardiovascular medicine, 16(12), pp. 329-331. EMH Swiss Medical Publishers Ltd

von Wyl, Viktor; Klimkait, Thomas; Yerly, Sabine; Nicca, Dunja; Furrer, Hansjakob; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Böni, Jürg; Aubert, Vincent; Günthard, Huldrych F.; Bucher, Heiner C.; Glass, Tracy R.; Wainberg, Mark (2013). Adherence as a Predictor of the Development of Class-Specific Resistance Mutations: The Swiss HIV Cohort Study. PLoS ONE, 8(10), e77691. Public Library of Science 10.1371/journal.pone.0077691

Bertisch, Barbara; Franceschi, Silvia; Lise, Mauro; Vernazza, Pietro; Keiser, Olivia; Schöni-Affolter, Franziska; Bouchardy, Christine; Dehler, Silvia; Levi, Fabio; Jundt, Gernot; Ess, Silvia; Pawlita, Michael; Kovari, Helen; Wandeler, Gilles; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Clifford, Gary (2013). Risk factors for anal cancer in persons infected with HIV: a nested case-control study in the Swiss HIV Cohort Study. American journal of epidemiology, 178(6), pp. 877-884. Oxford University Press 10.1093/aje/kwt153

Beerenwinkel, Niko; Montazeri, Hesam; Schuhmacher, Heike; Knupfer, Patrick; von Wyl, Viktor; Furrer, Hansjakob; Battegay, Manuel; Hirschel, Bernard; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Yerly, Sabine; Böni, Jürg; Klimkait, Thomas; Cellerai, Cristina; Günthard, Huldrych F.; Vandamme, Anne-Mieke (2013). The Individualized Genetic Barrier Predicts Treatment Response in a Large Cohort of HIV-1 Infected Patients. PLoS computational biology, 9(8), e1003203. Public Library of Science 10.1371/journal.pcbi.1003203

Aouri, Manel; Calmy, Alexandra; Hirschel, Bernard; Telenti, Amalio; Buclin, Thierry; Cavassini, Matthias; Rauch, Andri; Decosterd, Laurent A. (2013). A validated assay by liquid chromatography-tandem mass spectrometry for the simultaneous quantification of elvitegravir and rilpivirine in HIV positive patients. Journal of mass spectrometry, 48(5), pp. 616-625. Wiley 10.1002/jms.3200

Nüesch, Reto; Wang, Qing; Elzi, Luigia; Bernasconi, Enos; Weber, Rainer; Cavassini, Matthias; Vernazza, Pietro; Thurnheer, Maria C.; Calmy, Alexandra; Battegay, Manuel; Bucher, Heiner C. (2013). Risk of Cardiovascular Events and Blood Pressure Control in Hypertensive HIV-Infected Patients: HIV Cohort Study (SHCS). JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES, 62(4), pp. 396-404. Lippincott Williams & Wilkins 10.1097/QAI.0b013e3182847cd0

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Boillat-Blanco, Noémie; Darling, Katharine E. A.; Taffe, Patrick; Osih, Regina; Strahm, Carol; Adami, Maddalena; Elzi, Luigia; Daou, Samira; Fehr, Jan; Wandeler, Gilles; Cavassini, Matthias (2013). Impact of recommendation updates in well-controlled patients on nonrecommended antiretroviral therapies: the Swiss HIV cohort study. JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES, 62(2), pp. 180-189. Raven Press 10.1097/QAI.0b013e31827b626a

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Lubomirov, Rubin; Arab-Alameddine, Mona; Rotger, Margalida; Fayet-Mello, Aurélie; Martinez, Raquel; Guidi, Monia; di Iulio, Julia; Cavassini, Matthias; Günthard, Huldrych F.; Furrer, Hansjakob; Marzolini, Catia; Bernasconi, Enos; Calmy, Alexandra; Buclin, Thierry; Decosterd, Laurent A.; Csajka, Chantal; Telenti, Amalio (2013). Pharmacogenetics-based population pharmacokinetic analysis of etravirine in HIV-1 infected individuals. Pharmacogenetics and genomics, 23(1), pp. 9-18. Lippincott Williams & Wilkins 10.1097/FPC.0b013e32835ade82

Du Pasquier, Renaud A.; Jilek, Samantha; Kalubi, Malela; Yerly, Sabine; Fux, Christoph A.; Gutmann, Christine; Cusini, Alexia; Günthard, Huldrych F.; Cavassini, Matthias; Vernazza, Pietro L. (2013). Marked increase of the astrocytic marker S100B in the cerebrospinal fluid of HIV-infected patients on LPV/r-monotherapy. AIDS, 27(2), pp. 203-210. Lippincott Williams & Wilkins 10.1097/QAD.0b013e32835a9a4a

Wandeler, Gilles; Gsponer, Thomas; Bihl, Florian; Bernasconi, Enos; Cavassini, Matthias; Kovari, Helen; Schmid, Patrick; Battegay, Manuel; Calmy, Alexandra; Egger, Matthias; Furrer, Hansjakob; Rauch, Andri (2013). Hepatitis B virus infection is associated with impaired immunological recovery during antiretroviral therapy in the Swiss HIV cohort study. Journal of infectious diseases, 208(9), pp. 1454-1458. Cary, N.C.: Oxford University Press 10.1093/infdis/jit351

Rohrbach, Janine; Stickel, Felix; Schmid, Patrick; Thormann, Wolfgang; Kovari, Helen; Scherrer, Alexandra; Günthard, Huldrych F.; Vuichard, Danielle; Cavassini, Matthias; Ambrosioni, Juan; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri; Swiss HIV Cohort Study, The (2013). Changes in biomarkers of liver disease during successful combination antiretroviral therapy in HIV/HCV-coinfected individuals. Antiviral therapy, 19(2), pp. 149-159. International Medical Press 10.3851/IMP2686

Fenner, Lukas; Gagneux, Sebastien; Janssens, Jean-Paul; Fehr, Jan; Cavassini, Matthias; Hoffmann, Matthias; Bernasconi, Enos; Schrenzel, Jacques; Bodmer, Thomas; Böttger, Erik C; Helbling, Peter; Egger, Matthias; for the Swiss HIV Cohort and Molecular Epidemiology of Tuberculo, (2012). Tuberculosis in HIV-Negative and HIV-Infected Patients in a Low-Incidence Country: Clinical Characteristics and Treatment Outcomes. PLoS ONE, 7(3), e34186. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0034186

Keiser, Olivia; Spycher, Ben; Rauch, Andri; Calmy, Alexandra; Cavassini, Matthias; Glass, Tracy R; Nicca, Dunja; Ledergerber, Bruno; Egger, Matthias; Swiss HIV Cohort Study, (2012). Outcomes of antiretroviral therapy in the Swiss HIV Cohort Study: latent class analysis. AIDS and behavior, 16(2), pp. 245-55. New York, N.Y.: Springer US; http://www.springer-ny.com 10.1007/s10461-011-9971-5

Staehelin, Cornelia; Keiser, Olivia; Calmy, Alexandra; Weber, Rainer; Elzi, Luigia; Cavassini, Matthias; Schmid, Patrick; Bernasconi, Enos; Furrer, Hansjakob; Swiss HIV Cohort Study, (2012). Longer term clinical and virological outcome of sub-Saharan African participants on antiretroviral treatment in the Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 59(1), pp. 79-85. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318236be70

von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Shah, Cyril; Cellerai, Cristina; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hirschel, Bernard; Vernazza, Pietro L; Ledergerber, Bruno; Günthard, Huldrych F; Swiss HIV Cohort Study, (2012). Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations. Clinical infectious diseases, 54(1), pp. 131-40. Cary, N.C.: Oxford University Press 10.1093/cid/cir728

Wang, Qing; Young, Jim; Bernasconi, Enos; Cavassini, Matthias; Vernazza, Pietro; Hirschel, Bernard; Weber, Rainer; Furrer, Hansjakob; Stoeckle, Marcel; Bucher, Heiner C; Fux, Christoph Andreas; Swiss HIV, Cohort Study (2012). The prevalence of erectile dysfunction and its association with antiretroviral therapy in HIV-infected men: the Swiss HIV Cohort Study. Antiviral therapy, 18(3), pp. 337-344. London: International Medical Press 10.3851/IMP2372

Scherrer, Alexandra U.; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L.; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F.; Swiss HIV Cohort Study (SHCS), (2012). Long-lasting protection of activity of nucleoside reverse transcriptase inhibitors and protease inhibitors (PIs) by boosted PI containing regimens. PLoS ONE, 7(11), e50307. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0050307

Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Ledergerber, Bruno; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2012). Choice of Initial Combination Antiretroviral Therapy in Individuals With HIV Infection: Determinants and Outcomes. Archives of internal medicine, 172(17), pp. 1313-21. Chicago, Ill.: American Medical Association 10.1001/archinternmed.2012.3216

Scherrer, Alexandra U.; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Cellerai, Cristina; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L.; Bernasconi, Enos; Günthard, Huldrych F.; Swiss HIV Cohort Study, (2012). Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients. PLoS ONE, 7(6), e37983. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0037983

Young, Jim; Schäfer, Juliane; Fux, Christoph A; Furrer, Hansjakob; Bernasconi, Enos; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Weber, Rainer; Battegay, Manuel; Bucher, Heiner C; Swiss HIV Cohort Study, (2012). Renal function in patients with HIV starting therapy with tenofovir and either efavirenz, lopinavir or atazanavir. AIDS, 26(5), pp. 567-75. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32834f337c

Lubomirov, Rubin; Colombo, Sara; di Iulio, Julia; Ledergerber, Bruno; Martinez, Raquel; Cavassini, Matthias; Hirschel, Bernard; Bernasconi, Enos; Elzi, Luigia; Vernazza, Pietro; Furrer, Hansjakob; Günthard, Huldrych F; Telenti, Amalio; Swiss HIV Cohort Study, (2011). Association of pharmacogenetic markers with premature discontinuation of first-line anti-HIV therapy: an observational cohort study. Journal of infectious diseases, 203(2), pp. 246-57. Cary, N.C.: Oxford University Press 10.1093/infdis/jiq043

von Wyl, Viktor; Kouyos, Roger D; Yerly, Sabine; Böni, Jürg; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Staehelin, Cornelia; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. Journal of infectious diseases, 204(7), pp. 1095-103. Cary, N.C.: Oxford University Press 10.1093/infdis/jir491

Elzi, Luigia; Steffen, Ingrid; Furrer, Hansjakob; Fehr, Jan; Cavassini, Matthias; Hirschel, Bernard; Hoffmann, Matthias; Bernasconi, Enos; Bassetti, Stefano; Battegay, Manuel (2011). Improved sensitivity of an interferon-gamma release assay (T-SPOT.TB™) in combination with tuberculin skin test for the diagnosis of latent tuberculosis in the presence of HIV co-infection. BMC infectious diseases, 11, p. 319. London: BioMed Central 10.1186/1471-2334-11-319

Hasse, Barbara; Ledergerber, Bruno; Furrer, Hansjakob; Battegay, Manuel; Hirschel, Bernhard; Cavassini, Matthias; Bertisch, Barbara; Bernasconi, Enos; Weber, Rainer; Swiss HIV Cohort Study, (2011). Morbidity and aging in HIV-infected persons: the Swiss HIV cohort study. Clinical infectious diseases, 53(11), pp. 1130-9. Cary, N.C.: Oxford University Press 10.1093/cid/cir626

Marzolini, Catia; Back, David; Weber, Rainer; Furrer, Hansjakob; Cavassini, Matthias; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Khoo, Saye; Battegay, Manuel; Elzi, Luigia; Swiss HIV Cohort Study Members, (2011). Ageing with HIV: medication use and risk for potential drug-drug interactions. Journal of antimicrobial chemotherapy, 66(9), pp. 2107-11. Oxford: Oxford University Press 10.1093/jac/dkr248

Ortiz, Millán; Poloni, Estella S; Furrer, Hansjakob; Kovari, Helen; Martinez, Raquel; Arnedo, Mireia; Elzi, Luigia; Bernasconi, Enos; Vernazza, Pietro; Hirschel, Bernard; Cavassini, Matthias; Ledergerber, Bruno; Günthard, Huldrych F; Telenti, Amalio; Tarr, Philip E; Swiss HIV Cohort Study, (2011). No longitudinal mitochondrial DNA sequence changes in HIV-infected individuals with and without lipoatrophy. Journal of infectious diseases, 203(5), pp. 620-4. Cary, N.C.: Oxford University Press 10.1093/infdis/jiq106

Wyl, Viktor von; Gianella, Sara; Fischer, Marek; Niederoest, Barbara; Kuster, Herbert; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Rauch, Andri; Hirschel, Bernard; Vernazza, Pietro; Weber, Rainer; Joos, Beda; Günthard, Huldrych F; Swiss HIV Cohort Study-SHCS, (2011). Early antiretroviral therapy during primary HIV-1 infection results in a transient reduction of the viral setpoint upon treatment interruption. PLoS ONE, 6(11), e27463. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0027463

Scherrer, Alexandra U; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Bürgisser, Philippe; Rauch, Andri; Hirschel, Bernard; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Held, Leonhard; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). Improved virological outcome in White patients infected with HIV-1 non-B subtypes compared to subtype B. Clinical infectious diseases, 53(11), pp. 1143-52. Cary, N.C.: Oxford University Press 10.1093/cid/cir669

Boillat Blanco, Noémie; Probst, Arnold; Da Costa, Vreneli Waelti; Giulieri, Stefano; Bernasconi, Enos; Calmy, Alexandra; Elzi, Luigia; Rauch, Andri; Weber, Rainer; Bertisch, Barbara; Cavassini, Matthias; Bochud, Pierre-Yves (2011). Impact of a nurse vaccination program on hepatitis B immunity in a Swiss HIV clinic. Journal of acquired immune deficiency syndromes JAIDS, 58(5), pp. 472-4. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318237915e

Gianella, Sara; von Wyl, Viktor; Fischer, Marek; Niederoest, Barbara; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Rauch, Andri; Hirschel, Bernard; Vernazza, Pietro; Weber, Rainer; Joos, Beda; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). Effect of early antiretroviral therapy during primary HIV-1 infection on cell-associated HIV-1 DNA and plasma HIV-1 RNA. Antiviral therapy, 16(4), pp. 535-45. London: International Medical Press 10.3851/IMP1776

Nguyen, Alain; Calmy, Alexandra; Delhumeau, Cecile; Mercier, Isabelle; Cavassini, Matthias; Mello, Aurelie F; Elzi, Luigia; Rauch, Andri; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard (2011). A randomized cross-over study to compare raltegravir and efavirenz (SWITCH-ER study). AIDS, 25(12), pp. 1481-7. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e328348dab0

Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Rieder, Philip; Joos, Beda; Taffé, Patrick; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Rauch, Andri; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F; ... (2011). Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clinical infectious diseases, 52(4), pp. 532-9. Cary, N.C.: Oxford University Press 10.1093/cid/ciq164

Nguyen, Alain; Calmy, Alexandra; Delhumeau, Cécile; Mercier, Isabelle K; Cavassini, Matthias; Fayet-Mello, Aurélie; Elzi, Luigia; Genné, Daniel; Rauch, Andri; Bernasconi, Enos; Hirschel, Bernard; Swiss HIV Cohort Study, (2011). A randomized crossover study to compare efavirenz and etravirine treatment. AIDS, 25(1), pp. 57-63. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833f9f63

Scherrer, Alexandra U; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Bürgisser, Philippe; Garzoni, Christian; Hirschel, Bernard; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Swiss HIV Cohort Study (SHCS), (2011). Viral suppression rates in salvage treatment with raltegravir improved with the administration of genotypic partially active or inactive nucleoside/tide reverse transcriptase inhibitors. Journal of acquired immune deficiency syndromes JAIDS, 57(1), pp. 24-31. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318211925e

Fehr, Jan; Glass, Tracy R; Louvel, Séverine; Hamy, François; Hirsch, Hans H; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Bürgisser, Philippe; Cavassini, Matthias; Fux, Christoph A; Hirschel, Bernard; Vernazza, Pietro; Martinetti, Gladys; Bernasconi, Enos; Günthard, Huldrych F; Battegay, Manuel; Bucher, Heiner C; Klimkait, Thomas and Swiss HIV Cohort Study, (2011). Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals--the Swiss HIV Cohort Study. Journal of translational medicine, 9, p. 14. London: BioMed Central 10.1186/1479-5876-9-14

Rotger, Margalida; Gsponer, Thomas; Martinez, Raquel; Taffé, Patrick; Elzi, Luigia; Vernazza, Pietro; Cavassini, Matthias; Bernasconi, Enos; Hirschel, Bernard; Furrer, Hansjakob; Weber, Rainer; Ledergerber, Bruno; Egger, Matthias; Telenti, Amalio; Tarr, Philip E (2010). Impact of single nucleotide polymorphisms and of clinical risk factors on new-onset diabetes mellitus in HIV-infected individuals. Clinical infectious diseases, 51(9), pp. 1090-1098. Cary, N.C.: The University of Chicago Press 10.1086/656630

Thurnheer, Maria Christine; Weber, Rainer; Toutous-Trellu, Laurence; Cavassini, Matthias; Elzi, Luigia; Schmid, Patrick; Bernasconi, Enos; Christen, Anna B; Zwahlen, Marcel; Furrer, Hansjakob (2010). Occurrence, risk factors, diagnosis and treatment of syphilis in the prospective observational Swiss HIV Cohort Study. AIDS, 24(12), pp. 1907-1916. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833bfe21

Hasse, Barbara; Ledergerber, Bruno; Hirschel, Bernard; Vernazza, Pietro; Glass, Tracy R; Jeannin, Andre; Evison, John-Marc; Elzi, Luigia; Cavassini, Matthias; Bernasconi, Enos; Nicca, Dunja; Weber, Rainer; Swiss HIV Cohort Study, (2010). Frequency and determinants of unprotected sex among HIV-infected persons: the Swiss HIV cohort study. Clinical infectious diseases, 51(11), pp. 1314-22. Cary, N.C.: The University of Chicago Press 10.1086/656809

Marzolini, Catia; Elzi, Luigia; Gibbons, Sara; Weber, Rainer; Fux, Christoph; Furrer, Hansjakob; Chave, Jean-Philippe; Cavassini, Matthias; Bernasconi, Enos; Calmy, Alexandra; Vernazza, Pietro; Khoo, Saye; Ledergerber, Bruno; Back, David; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Prevalence of comedications and effect of potential drug-drug interactions in the Swiss HIV Cohort Study. Antiviral therapy, 15(3), pp. 413-23. London: International Medical Press 10.3851/IMP1540

Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Taffé, Patrick; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Furrer, Hansjakob; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Rickenbach, Martin; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F (2010). Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. Journal of infectious diseases, 201(10), pp. 1488-97. Cary, N.C.: The University of Chicago Press 10.1086/651951

Lubomirov, Rubin; di Iulio, Julia; Fayet, Aurélie; Colombo, Sara; Martinez, Raquel; Marzolini, Catia; Furrer, Hansjakob; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Ledergerber, Bruno; Rentsch, Katharina; Descombes, Patrick; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal; Telenti, Amalio; Swiss HIV Cohort Study, (2010). ADME pharmacogenetics: investigation of the pharmacokinetics of the antiretroviral agent lopinavir coformulated with ritonavir. Pharmacogenetics and genomics, 20(4), pp. 217-30. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e328336eee4

Elzi, Luigia; Marzolini, Catia; Furrer, Hansjakob; Ledergerber, Bruno; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Treatment modification in human immunodeficiency virus-infected individuals starting combination antiretroviral therapy between 2005 and 2008. Archives of internal medicine, 170(1), pp. 57-65. Chicago, Ill.: American Medical Association 10.1001/archinternmed.2009.432

Glass, Tracy R; Battegay, Manuel; Cavassini, Matthias; De Geest, Sabina; Furrer, Hansjakob; Vernazza, Pietro L; Hirschel, Bernard; Bernasconi, Enos; Rickenbach, Martin; Günthard, Huldrych F; Bucher, Heiner C; Swiss HIV Cohort Study, (2010). Longitudinal analysis of patterns and predictors of changes in self-reported adherence to antiretroviral therapy: Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 54(2), pp. 197-203. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e3181ca48bf

Osih, Regina B; Taffé, Patrick; Rickenbach, Martin; Gayet-Ageron, Angèle; Elzi, Luigia; Fux, Christoph; Opravil, Milos; Bernasconi, Enos; Schmid, Patrick; Günthard, Huldrych F; Cavassini, Matthias; Swiss HIV Cohort Study, (2010). Outcomes of patients on dual-boosted PI regimens: experience of the Swiss HIV cohort study. AIDS research and human retroviruses, 26(11), pp. 1239-46. New York, N.Y.: Mary Ann Liebert 10.1089/aid.2010.0070

Gutmann, Christine; Cusini, Alexia; Günthard, Huldrych F; Fux, Christoph; Hirschel, Bernard; Decosterd, Laurent-Arthur; Cavassini, Matthias; Yerly, Sabine; Vernazza, Pietro L; Swiss HIV Cohort Study (SHCS), (2010). Randomized controlled study demonstrating failure of LPV/r monotherapy in HIV: the role of compartment and CD4-nadir. AIDS, 24(15), pp. 2347-54. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833db9a1

Bucher, Heiner C; Rickenbach, Martin; Young, Jim; Glass, Tracy R; Vallet, Yannick; Bernasconi, Enos; Cavassini, Matthias; Fux, Christoph; Schiffer, Véronique; Vernazza, Pietro; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Randomized trial of a computerized coronary heart disease risk assessment tool in HIV-infected patients receiving combination antiretroviral therapy. Antiviral therapy, 15(1), pp. 31-40. London: International Medical Press 10.3851/IMP1475

Young, Jim; Bucher, Heiner C; Guenthard, Huldrych F; Rickenbach, Martin; Fux, Christoph A; Hirschel, Bernard; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel (2009). Virological and immunological responses to efavirenz or boosted lopinavir as first-line therapy for patients with HIV. Antiviral therapy, 14(6), pp. 771-9. London: International Medical Press 10.3851/IMP1291

Elzi, Luigia; Kaufmann, Gilbert; Weber, Rainer; Fux, Christoph A; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel (2009). Discontinuation of enfuvirtide in heavily pretreated HIV-infected individuals. HIV clinical trials, 10(4), pp. 207-14. St. Louis, Mo.: Thomas Land Publishers 10.1310/hct1004-207

Khanna, Nina; Elzi, Luigia; Mueller, Nicolas J; Garzoni, Christian; Cavassini, Matthias; Fux, Christoph A; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel; Hirsch, Hans H (2009). Incidence and outcome of progressive multifocal leukoencephalopathy over 20 years of the Swiss HIV Cohort Study. Clinical infectious diseases, 48(10), pp. 1459-66. Cary, N.C.: The University of Chicago Press 10.1086/598335

Rotger, Margalida; Bayard, Cornelia; Taffé, Patrick; Martinez, Raquel; Cavassini, Matthias; Bernasconi, Enos; Battegay, Manuel; Hirschel, Bernard; Furrer, Hansjakob; Witteck, Andrea; Weber, Rainer; Ledergerber, Bruno; Telenti, Amalio; Tarr, Philip E (2009). Contribution of genome-wide significant single-nucleotide polymorphisms and antiretroviral therapy to dyslipidemia in HIV-infected individuals: a longitudinal study. Circulation - cardiovascular genetics, 2(6), pp. 621-8. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1161/CIRCGENETICS.109.874412

Ballif, Marie; Ledergerber, Bruno; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard; Furrer, Hansjakob; Rickenbach, Martin; Opravil, Milos; Weber, Rainer (2009). Impact of previous virological treatment failures and adherence on the outcome of antiretroviral therapy in 2007. PLoS ONE, 4(12), e8275. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0008275

Conen, Anna; Fehr, Jan; Glass, Tracy R; Furrer, Hansjakob; Weber, Rainer; Vernazza, Pietro; Hirschel, Bernard; Cavassini, Matthias; Bernasconi, Enos; Bucher, Heiner C; Battegay, Manuel (2009). Self-reported alcohol consumption and its association with adherence and outcome of antiretroviral therapy in the Swiss HIV Cohort Study. Antiviral therapy, 14(3), pp. 349-57. London: International Medical Press

di Iulio, Julia; Fayet, Aurélie; Arab-Alameddine, Mona; Rotger, Margalida; Lubomirov, Rubin; Cavassini, Matthias; Furrer, Hansjakob; Günthard, Huldrych F; Colombo, Sara; Csajka, Chantal; Eap, Chin B; Decosterd, Laurent A; Telenti, Amalio (2009). In vivo analysis of efavirenz metabolism in individuals with impaired CYP2A6 function. Pharmacogenetics and genomics, 19(4), pp. 300-9. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e328328d577

von Wyl, Viktor; Yerly, Sabine; Bürgisser, Philippe; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hirschel, Bernard; Vernazza, Pietro L; Francioli, Patrick; Bonhoeffer, Sebastian; Ledergerber, Bruno; Günthard Huldrych, F; Swiss HIV Cohort Study, (2009). Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. Clinical infectious diseases, 48(7), pp. 979-87. Cary, N.C.: The University of Chicago Press 10.1086/597352

Veit, Olivia; Niedrig, Matthias; Chapuis-Taillard, Caroline; Cavassini, Matthias; Mossdorf, Erik; Schmid, Patrick; Bae, Hi-Gung; Litzba, Nadine; Staub, Thomas; Hatz, Christoph; Furrer, Hansjakob (2009). Immunogenicity and safety of yellow fever vaccination for 102 HIV-infected patients. Clinical infectious diseases, 48(5), pp. 659-66. Cary, N.C.: The University of Chicago Press 10.1086/597006

Dang, Thanh; Jaton-Ogay, Katia; Flepp, Markus; Kovari, Helen; Evison, John-Marc; Fehr, Jan; Schmid, Patrick; Boffi El Amari, Emmanuelle; Cavassini, Matthias; Odorico, Massimo; Tarr, Philip E; Greub, Gilbert (2009). High prevalence of anorectal chlamydial infection in HIV-infected men who have sex with men in Switzerland. Clinical infectious diseases, 49(10), pp. 1532-5. Cary, N.C.: The University of Chicago Press 10.1086/644740

Vo, Thi Tuyet Nhung; Ledergerber, Bruno; Keiser, Olivia; Hirschel, Bernard; Furrer, Hansjakob; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Weber, Rainer (2008). Durability and outcome of initial antiretroviral treatments received during 2000--2005 by patients in the Swiss HIV Cohort Study. Journal of infectious diseases, 197(12), pp. 1685-94. Cary, N.C.: The University of Chicago Press 10.1086/588141

Fux, Christoph A; Rauch, Andri; Simcock, Mathew; Bucher, Heiner C; Hirschel, Bernard; Opravil, Milos; Vernazza, Pietro; Cavassini, Matthias; Bernasconi, Enos; Elzi, Luigia; Furrer, Hansjakob (2008). Tenofovir use is associated with an increase in serum alkaline phosphatase in the Swiss HIV Cohort Study. Antiviral therapy, 13(8), pp. 1077-82. London: International Medical Press

Rauch, Andri; Nolan, David; Thurnheer, Christine; Fux, Christoph A; Cavassini, Matthias; Chave, Jean-Philippe; Opravil, Milos; Phillips, Elizabeth; Mallal, Simon; Furrer, Hansjakob (2008). Refining abacavir hypersensitivity diagnoses using a structured clinical assessment and genetic testing in the Swiss HIV Cohort Study. Antiviral therapy, 13(8), pp. 1019-28. London: International Medical Press

Khanna, Nina; Opravil, Milos; Furrer, Hansjakob; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Hirschel, Bernard; Battegay, Manuel; Kaufmann, Gilbert R (2008). CD4+ T cell count recovery in HIV type 1-infected patients is independent of class of antiretroviral therapy. Clinical infectious diseases, 47(8), pp. 1093-101. Cary, N.C.: The University of Chicago Press 10.1086/592113

Rauch, Andri; Gaudieri, Silvana; Evison, John; Nolan, David; Cavassini, Matthias; Weber, Rainer; James, Ian; Furrer, Hansjakob (2008). Low current and nadir CD4+ T-cell counts are associated with higher hepatitis C virus RNA levels in the Swiss HIV cohort study. Antiviral therapy, 13(3), pp. 455-60. London: International Medical Press

von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Bürgisser, Philippe; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hirschel, Bernard; Vernazza, Pietro L; Rickenbach, Martin; Ledergerber, Bruno; Günthard, Huldrych F (2008). Factors associated with the emergence of K65R in patients with HIV-1 infection treated with combination antiretroviral therapy containing tenofovir. Clinical infectious diseases, 46(8), pp. 1299-309. Cary, N.C.: The University of Chicago Press 10.1086/528863

El Amari, Emmanuelle Boffi; Toutous-Trellu, Laurence; Gayet-Ageron, Angèle; Baumann, Michele; Cathomas, Gieri; Steffen, Ingrid; Erb, Peter; Mueller, Nicolas J; Furrer, Hansjakob; Cavassini, Matthias; Vernazza, Pietro; Hirsch, Hans H; Bernasconi, Enos; Hirschel, Bernard (2008). Predicting the evolution of Kaposi sarcoma, in the highly active antiretroviral therapy era. AIDS, 22(9), pp. 1019-28. Hagerstown, Md.: Lippincott Williams & Wilkins

Glass, Tracy R; De Geest, Sabina; Weber, Rainer; Vernazza, Pietro L; Rickenbach, Martin; Furrer, Hansjakob; Bernasconi, Enos; Cavassini, Matthias; Hirschel, Bernard; Battegay, Manuel; Bucher, Heiner C (2006). Correlates of self-reported nonadherence to antiretroviral therapy in HIV-infected patients: the Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 41(3), pp. 385-92. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/01.qai.0000186371.95301.52

Conference or Workshop Item

Gisler, Valentin; Kraus, David; Nemeth, Johannes; Lecompte, Marthe Than; Merz, Laurent; Stoeckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Weber, Rainer; Cavassini, Matthias; Calmy, Alexandra; Elzi, Luigia; Furrer, Hansjakob (2 November 2014). AIDS defining opportunistic infections in patients with high CD4 counts in the combination antiretroviral therapy (cART) era: things ain't what they used to be. Journal of the International AIDS Society, 17(Suppl 3), p. 19621. BioMed Central 10.7448/IAS.17.4.19621

Aebi-Popp, Karoline; Kouyos, Roger; Bertisch, Barbara; Staehelin, Cornelia Johanna; Hoesli, Irene; Rickenbach, Martin; Thorne, Claire; Grawe, Claudia; Bernasconi, Enos; Cavassini, Matthias; de Tejada, Begona Martinez; Stoeckle, Marcel; Lecompte, Thanh; Rudin, Christoph; Fehr, Jan (2014). Loss to follow-up of HIV-infected women after delivery: The Swiss HIV Cohort Study and the Swiss Mother and Child HIV Cohort Study. Journal of the International AIDS Society, 17(4,Suppl3), p. 19535. BioMed Central 10.7448/IAS.17.4.19535

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