Polacek, Norbert

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Holmes, Andrew D; Chan, Patricia P; Chen, Qi; Ivanov, Pavel; Drouard, Laurence; Polacek, Norbert; Kay, Mark A; Lowe, Todd M (2023). A standardized ontology for naming tRNA-derived RNAs based on molecular origin. Nature methods, 20(5), pp. 627-628. Springer Nature 10.1038/s41592-023-01813-2


Raad, Nicole; Tandon, Disha; Hapfelmeier, Siegfried; Polacek, Norbert (2022). The stationary phase-specific sRNA FimR2 is a multifunctional regulator of bacterial motility, biofilm formation and virulence. Nucleic acids research, 50(20), pp. 11858-11875. Oxford University Press 10.1093/nar/gkac1025

Gallo, Stefano; Kong, Eunbin; Ferro, Iolanda; Polacek, Norbert (2022). Small but Powerful: The Human Vault RNAs as Multifaceted Modulators of Pro-Survival Characteristics and Tumorigenesis. Cancers, 14(11), p. 2787. MDPI AG 10.3390/cancers14112787

Pecoraro, Valentina; Rosina, Alessia; Polacek, Norbert (2022). Ribosome-Associated ncRNAs (rancRNAs) Adjust Translation and Shape Proteomes. Non-Coding RNA, 8(2), p. 22. MDPI 10.3390/ncrna8020022

Aung, Lynn Htet Htet; Li, Peifeng; Perez-Cruz, Claudia; Polacek, Norbert; Resendiz, Marino J. E. (2022). Editorial: Oxidative Damage of RNA: Structure, Function, and Biological Implications - From Nucleotides to Short and Long RNAs in Chemistry and Biology. Frontiers in Molecular Biosciences, 9 Frontiers 10.3389/fmolb.2022.853725

Fasnacht, Michel; Gallo, Stefano; Sharma, Puneet; Himmelstoß, Maximilian; Limbach, Patrick A; Willi, Jessica; Polacek, Norbert (2022). Dynamic 23S rRNA modification ho5C2501 benefits Escherichia coli under oxidative stress. Nucleic acids research, 50(1), pp. 473-489. Oxford University Press 10.1093/nar/gkab1224

Gonskikh, Yulia; Pecoraro, Valentina; Polacek, Norbert (2022). Mammalian In Vitro Translation Systems. In: Matějů, Daniel; Chao, Jeffrey A. (eds.) The Integrated Stress Response. Methods in molecular biology: Vol. 2428 (pp. 101-111). Humana Press 10.1007/978-1-0716-1975-9_7


Krauer, Nina; Rauscher, Robert; Polacek, Norbert (2021). tRNA Synthetases Are Recruited to Yeast Ribosomes by rRNA Expansion Segment 7L but Do Not Require Association for Functionality. Non-Coding RNA, 7(4), p. 73. MDPI 10.3390/ncrna7040073

Reuther, Julia; Schneider, Lukas; Iacovache, Ioan; Pircher, Andreas; Gharib, Walid H.; Zuber, Benoît; Polacek, Norbert (2021). A small ribosome-associated ncRNA globally inhibits translation by restricting ribosome dynamics. RNA biology, 18(12), pp. 2617-2632. Taylor and Francis 10.1080/15476286.2021.1935573

Svetlov, Maxim S.; Koller, Timm O.; Meydan, Sezen; Shankar, Vaishnavi; Klepacki, Dorota; Polacek, Norbert; Guydosh, Nicholas R.; Vázquez-Laslop, Nora; Wilson, Daniel N.; Mankin, Alexander S. (2021). Context-specific action of macrolide antibiotics on the eukaryotic ribosome. Nature Communications, 12(1) Springer Nature 10.1038/s41467-021-23068-1

Fasnacht, Michel; Polacek, Norbert (2021). Oxidative Stress in Bacteria and the Central Dogma of Molecular Biology. Frontiers in Molecular Biosciences, 8 Frontiers 10.3389/fmolb.2021.671037

Ferro, Iolanda; Gavini, Jacopo; Gallo, Stefano; Bracher, Lisamaria; Landolfo, Marc; Candinas, Daniel; Keogh-Stroka, Deborah M.; Polacek, Norbert (2021). The human vault RNA enhances tumorigenesis and chemoresistance through the lysosome in hepatocellular carcinoma. Autophagy, 18(1), pp. 191-203. Landes Bioscience 10.1080/15548627.2021.1922983

Cristodero, Marina; Brogli, Rebecca; Joss, Oliver; Schimanski, Bernd; Schneider, André; Polacek, Norbert (2021). tRNA 3' shortening by LCCR4 as a response to stress in Trypanosoma brucei. Nucleic acids research, 49(3), pp. 1647-1661. Oxford University Press 10.1093/nar/gkaa1261

Raad, Nicole; Luidalepp, Hannes; Fasnacht, Michel; Polacek, Norbert (2021). Transcriptome-Wide Analysis of Stationary Phase Small ncRNAs in E. coli. International journal of molecular sciences, 22(4), p. 1703. MDPI 10.3390/ijms22041703

Pinel-Marie, Marie-Laure; Brielle, Régine; Riffaud, Camille; Germain-Amiot, Noëlla; Polacek, Norbert; Felden, Brice (2021). RNA antitoxin SprF1 binds ribosomes to attenuate translation and promote persister cell formation in Staphylococcus aureus. Nature microbiology, 6(2), pp. 209-220. Springer Nature 10.1038/s41564-020-00819-2


Polacek, Norbert; Ivanov, Pavel (2020). The regulatory world of tRNA fragments beyond canonical tRNA biology. RNA biology, 17(8), pp. 1057-1059. Taylor & Francis 10.1080/15476286.2020.1785196

Bracher, Lisamaria; Ferro, Iolanda; Pulido-Quetglas, Carlos; Ruepp, Marc-David; Johnson, Rory; Polacek, Norbert (2020). Human vtRNA1-1 Levels Modulate Signaling Pathways and Regulate Apoptosis in Human Cancer Cells. Biomolecules, 10(4), p. 614. MDPI 10.3390/biom10040614

Shankar, Vaishnavi; Rauscher, Robert; Reuther, Julia; Gharib, Walid H; Koch, Miriam; Polacek, Norbert (2020). rRNA expansion segment 27Lb modulates the factor recruitment capacity of the yeast ribosome and shapes the proteome. Nucleic acids research, 48(6), pp. 3244-3256. Oxford University Press 10.1093/nar/gkaa003

Gonskikh, Yulia; Gerstl, Matthias; Kos, Martin; Borth, Nicole; Schosserer, Markus; Grillari, Johannes; Polacek, Norbert (2020). Modulation of mammalian translation by a ribosome-associated tRNA half. RNA biology, 17(8), pp. 1125-1136. Landes Bioscience 10.1080/15476286.2020.1744296


Heissenberger, Clemens; Liendl, Lisa; Nagelreiter, Fabian; Gonskikh, Yulia; Yang, Guohuan; Stelzer, Elena M.; Krammer, Teresa L.; Micutkova, Lucia; Vogt, Stefan; Kreil, David P.; Sekot, Gerhard; Siena, Emilio; Poser, Ina; Harreither, Eva; Linder, Angela; Ehret, Viktoria; Helbich, Thomas H.; Grillari-Voglauer, Regina; Jansen-Dürr, Pidder; Koš, Martin; ... (2019). Loss of the ribosomal RNA methyltransferase NSUN5 impairs global protein synthesis and normal growth. Nucleic acids research, 47(22), pp. 11807-11825. Oxford University Press 10.1093/nar/gkz1043

Shikha, Shikha; Brogli, Rebecca; Schneider, André; Polacek, Norbert (2019). tRNA Biology in Trypanosomes. CHIMIA, 73(5), pp. 395-405. Schweizerische Chemische Gesellschaft 10.2533/chimia.2019.395

Fricker, Roger; Brogli, Rebecca; Luidalepp, Hannes; Wyss, Leander Nicolas; Fasnacht, Michel; Joss, Oliver; Zywicki, Marek; Helm, Mark; Schneider, André; Cristodero, Marina; Polacek, Norbert (2019). A tRNA half modulates translation as stress response in Trypanosoma brucei. Nature communications, 10(1) Nature Publishing Group 10.1038/s41467-018-07949-6


Wyss, Leander Nicolas; Waser, Melanie; Gebetsberger, Jennifer; Zywicki, Marek; Polacek, Norbert (2018). mRNA-specific translation regulation by a ribosome-associated ncRNA in Haloferax volcanii. Scientific Reports, 8(1) Nature Publishing Group 10.1038/s41598-018-30332-w

Willi, Jessica; Küpfer, Pascal; Evéquoz, Damien; Fernandez, Guillermo; Katz, Assaf; Leumann, Christian; Polacek, Norbert (2018). Oxidative stress damages rRNA inside the ribosome and differentially affects the catalytic center. Nucleic acids research, 46(4), pp. 1945-1957. Information Retrieval Ltd. 10.1093/nar/gkx1308


Polacek, Norbert (27 September 2017). The multifaceted roles of ribosome-associated ncRNAs (rancRNAs) (Unpublished). In: 18th annual meeting of the Ribo Club. Mont Orford, Quebec, Canada. 25.09.-28.09.2017.

Gonskikh, Yulia; Polacek, Norbert (2017). Alterations of the translation apparatus during aging and stress response. Mechanisms of Ageing and Development, 168, pp. 30-36. Elsevier 10.1016/j.mad.2017.04.003

Koch, Miriam; Willi, Jessica; Polacek, Norbert (2017). Critical 23S rRNA interactions for macrolide-dependent ribosome stalling on the ErmCL nascent peptide chain. Nucleic acids research, 45(11), pp. 6717-6728. Oxford University Press 10.1093/nar/gkx195

Cristodero, Marina; Polacek, Norbert (2017). The multifaceted regulatory potential of tRNA-derived fragments. Non-coding RNA investigation AME Publishing Company 10.21037/ncri.2017.08.07


Gebetsberger, Jennifer Viktoria; Wyss, Leander; Mleczko, Anna M.; Reuther, Julia; Polacek, Norbert (2016). A tRNA-derived fragment competes with mRNA for ribosome binding and regulates translation during stress. RNA biology, 14(10), pp. 1364-1373. Taylor and Francis 10.1080/15476286.2016.1257470

Polacek, Norbert (5 September 2016). The role of tRNA-derived fragments in stress response (Unpublished). In: 26th tRNA Conference. Jeju, Korea. 04.-08.09.2016.

Cristodero, Marina; Fricker, Roger; Schneider, André; Polacek, Norbert (5 September 2016). Biology of tRNAs in Trypanosoma brucei during stress (Unpublished). In: 26th tRNA Conference. Jeju, Korea. 04.-08.09.2016.

Luidalepp, Hannes; Polacek, Norbert (8 August 2016). Ribosome Shut-Down by 16S rRNA Fragmentation in Stationary-Phase Escherichia coli (Unpublished). In: The 2016 Molecular Genetics of Bacteria and Phages Meeting. Madison, WI, USA. 08.-12.08.2016.

Polacek, Norbert (9 July 2016). Ribosome-associated ncRNAs (rancRNAs): An emerging class of translation regulators (Unpublished). In: EMBO Conference Ribosome – Structure and Function 2016. Strasbourg, France. 06.-10.07.2016.

Koch, Miriam; Küpfer, Pascal; Leumann, Christian; Polacek, Norbert; Willi, Jessica (9 July 2016). Oxidized bases in the ribosome's peptidyl transferase center and their effects on translation (Unpublished). In: EMBO Conference Ribosome – Structure and Function 2016. Strasbourg, France. 06.-10.07.2016.

Wyss, Leander; Gebetsberger, Jennifer Viktoria; Polacek, Norbert (6 July 2016). An intergenic non-coding RNA targets and regulates the ribosome in H. volcanii. (Unpublished). In: EMBO Conference Ribosome – Structure and Function 2016. Strasbourg, France. 06.-10.07.2016.

Luidalepp, Hannes; Berger, Stefan; Joss, Oliver; Tenson, Tanel; Polacek, Norbert (2016). Ribosome Shut-Down by 16S rRNA Fragmentation in Stationary-Phase Escherichia coli. Journal of molecular biology, 428(10), pp. 2237-2247. Elsevier 10.1016/j.jmb.2016.01.033


Polacek, Norbert (9 September 2015). Ribosome-associated ncRNAs (rancRNAs) An emerging class of translation regulators (Unpublished). In: Protein synthesis and translational control. Heidelberg, Deutschland. 09.–13.09.2015.

Amort, Melanie; Nachbauer, Birgit; Tuzlak, Selma; Kieser, Arnd; Schepers, Aloys; Villunger, Andreas; Polacek, Norbert (2015). Expression of the vault RNA protects cells from undergoing apoptosis. Nature communications, 6(7030), p. 7030. Nature Publishing Group 10.1038/ncomms8030

Koch, Miriam; Flür, Sara; Kreutz, Christoph; Ennifar, Eric; Micura, Ronald; Polacek, Norbert (2015). Role of a ribosomal RNA phosphate oxygen during the EF-G–triggered GTP hydrolysis. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 112(20), p. 201505231. National Academy of Sciences NAS 10.1073/pnas.1505231112

Polacek, Norbert (26 February 2015). The ribosome as novel target for stress-induced small regulatory RNAs (Unpublished). In: Gordon Research Conference “Translation machinery in health & disease”. Ventura, CA, USA. 22.–27.02.2015.

Schosserer, Markus; Minois, Nadege; Angerer, Tina B.; Amring, Manuela; Dellago, Hanna; Harreither, Eva; Calle-Perez, Alfonso; Pircher, Andreas; Gerstl, Matthias Peter; Pfeifenberger, Sigrid; Brandl, Clemens; Sonntagbauer, Markus; Kriegner, Albert; Linder, Angela; Weinhäusel, Andreas; Mohr, Thomas; Steiger, Matthias; Mattanovich, Diethard; Rinnerthaler, Mark; Karl, Thomas; ... (2015). Methylation of ribosomal RNA by NSUN5 is a conserved mechanism modulating organismal lifespan. Nature communications, 6(6158), p. 6158. Nature Publishing Group 10.1038/ncomms7158

Koch, Miriam; Clementi, Nina; Rusca, Nicola; Vögele, Paul; Erlacher, Matthias; Polacek, Norbert (2015). The integrity of the G2421-C2395 base pair in the ribosomal E-site is crucial for protein synthesis. RNA biology, 12(1), pp. 70-81. Taylor and Francis 10.1080/15476286.2015.1017218

Gebetsberger, Jennifer Viktoria; Fricker, Roger; Polacek, Norbert (2015). cDNA Library Generation for the Analysis of Small RNAs by High-Throughput Sequencing. Methods in molecular biology, 1296, pp. 139-149. Humana Press 10.1007/978-1-4939-2547-6_13


Pircher, Andreas; Gebetsberger, Jennifer Viktoria; Polacek, Norbert (2014). Ribosome-associated ncRNAs: An emerging class of translation regulators. RNA biology, 11(11), pp. 1335-1339. Taylor and Francis 10.1080/15476286.2014.996459

Pircher, Andreas; Bakowska-Zywicka, Kamilla; Schneider, Lukas; Zywicki, Marek; Polacek, Norbert (2014). An mRNA-Derived Noncoding RNA Targets and Regulates the Ribosome. Molecular cell, 54(1), pp. 147-155. Cell Press 10.1016/j.molcel.2014.02.024


Gebetsberger, Jennifer Viktoria; Polacek, Norbert (2013). Slicing tRNAs to boost functional ncRNA diversity. RNA biology, 10(12), pp. 1798-1806. Landes Bioscience 10.4161/rna.27177

Polacek, Norbert (9 July 2013). The ribosome as novel target for small regulatory RNAs (Unpublished). In: Ribosome Conference 2013. Napa Valley, USA. 09.-12.07.2013.

Polacek, Norbert (4 June 2013). The ribosome as novel target for small regulatory RNAs (Unpublished). In: Regulating with RNA in Bacteria. Würzburg, Deutschland. 04.-08.06.2013.

Polacek, Norbert (2013). Atomic Mutagenesis of the Ribosome: Towards a Molecular Understanding of Translation. CHIMIA, 67(5), pp. 322-326. Bern: Schweizerische Chemische Gesellschaft 10.2533/chimia.2013.322


Gebetsberger, Jennifer; Zywicki, Marek; Künzi, Andrea; Polacek, Norbert (2012). tRNA-Derived Fragments Target the Ribosome and Function as Regulatory Non-Coding RNA in Haloferax volcanii. Archaea, 2012(260909), pp. 1-11. Victoria, B.C.: Heron Pub. 10.1155/2012/260909

Zywicki, Marek; Bakowska-Zywicka, Kamilla; Polacek, Norbert (2012). Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis. Nucleic acids research, 40(9), pp. 4013-4024. London: Oxford University Press 10.1093/nar/gks020

Erlacher, Matthias D.; Polacek, Norbert (2012). Probing Functions of the Ribosomal Peptidyl Transferase Center by Nucleotide Analog Interference. In: Hartig, Jörg S. (ed.) Ribozymes. Methods in Molecular Biology: Vol. 848 (pp. 215-226). Heidelberg: Springer Verlag 10.1007/978-1-61779-545-9_14

Graber, Dagmar; Trappl, Krista; Steger, Jessica; Geiermann, Anna-Skrollan; Rigger, Lukas; Moroder, Holger; Polacek, Norbert; Micura, Ronald (2012). Deoxyribozyme-Based, Semisynthetic Access to Stable Peptidyl-tRNAs Exemplified by tRNAVal Carrying a Macrolide Antibiotic Resistance Peptide. In: Hartig, Jörg S. (ed.) Ribozymes. Methods in Molecular Biology: Vol. 848 (pp. 201-213). Heidelberg: Springer Verlag 10.1007/978-1-61779-545-9_13

Gebetsberger, Jennifer; Zywicki, Marek; Polacek, Norbert (2012). The origin of translational control: Are there small ncRNAs interacting with the archaeal ribosome? In: Swiss RNA Workshop 3.2.2012.

Erlacher, Matthias; Micura, Ronald; Polacek, Norbert (2012). Unravelling molecular mechanisms of translation by atomic mutagenesis of the ribosome. In: Swiss RNA Workshop 3.2.2012.

Gebetsberger, Jennifer; Zywicki, Marek; Polacek, Norbert (2012). The origin of translational control: Are there small ncRNAs interacting with the archaeal ribosome? In: Microsymposium on small RNAs 21.-23.5.2012.

Pircher, Andreas; Bakoeska-Zywicka, Kamilla; Zywicki, Marek; Polacek, Norbert (2012). Functional characterisation of an mRNA-derived non-coding RNA that regulates translation in Saccharomyces cerevisiae. In: Microsymposium on small RNAs 21.-23.5.2012.

Gebetsberger, Jennifer; Zywicki, Marek; Polacek, Norbert (2012). The origin of translational control: Are there small ncRNAs interacting with the archaeal ribosome? In: Molecular Biology in Archaea 2.-4.7.2012.

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