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Zeeb, Marius; Frischknecht, Paul; Huber, Michael; Schenkel, Corinne D; Neumann, Kathrin; Leeman, Christine; Notter, Julia; Rauch, Andri; Stöckle, Marcel; Cavassini, Matthias; Bernasconi, Enos; Braun, Dominique L; Günthard, Huldrych F; Metzner, Karin J; Kouyos, Roger D (2024). Genetic diversity from proviral DNA as a proxy for time since HIV-1 infection. The journal of infectious diseases, 230(3), e631-e636. Oxford University Press 10.1093/infdis/jiae149
Fernbach, Sonja; Mair, Nina K; Abela, Irene A; Groen, Kevin; Kuratli, Roger; Lork, Marie; Thorball, Christian W; Bernasconi, Enos; Filippidis, Paraskevas; Leuzinger, Karoline; Notter, Julia; Rauch, Andri; Hirsch, Hans H; Huber, Michael; Günthard, Huldrych F; Fellay, Jacques; Kouyos, Roger D; Hale, Benjamin G (2024). Loss of tolerance precedes triggering and lifelong persistence of pathogenic type I interferon autoantibodies. Journal of experimental medicine, 221(9) Rockefeller University Press 10.1084/jem.20240365
Abela, Irene A; Hauser, Anthony; Schwarzmüller, Magdalena; Pasin, Chloé; Kusejko, Katharina; Epp, Selina; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph A; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Gottschalk, Jochen; Schindler, Eméry; Wepf, Alexander; Marconato, Maddalena; ... (2024). Deciphering factors linked with reduced SARS-CoV-2 susceptibility in the Swiss HIV Cohort Study. The journal of infectious diseases, 230(2), e292-e304. Oxford University Press 10.1093/infdis/jiae002
Rupasinghe, Dhanushi; Bansi-Matharu, Loveleen; Law, Matthew; Zangerle, Robert; Rauch, Andri; Tarr, Philip E; Greenberg, Lauren; Neesgaard, Bastian; Jaschinski, Nadine; De Wit, Stéphane; Wit, Ferdinand; Monforte, Antonella d'Arminio; Fontas, Eric; Castagna, Antonella; Stecher, Melanie; Brandes, Vanessa; Florence, Eric; Begovac, Josip; Mussini, Cristina; Sönnerborg, Anders; ... (2024). Integrase strand transfer inhibitor (INSTI) related changes in BMI and risk of diabetes: a prospective study from the RESPOND cohort consortium. (In Press). Clinical infectious diseases Oxford University Press 10.1093/cid/ciae406
Neuner-Jehle, Nadia; Zeeb, Marius; Thorball, Christian W; Fellay, Jacques; Metzner, Karin J; Frischknecht, Paul; Neumann, Kathrin; Leeman, Christine; Rauch, Andri; Stöckle, Marcel; Huber, Michael; Perreau, Matthieu; Bernasconi, Enos; Notter, Julia; Hoffmann, Matthias; Leuzinger, Karoline; Günthard, Huldrych F; Pasin, Chloé; Kouyos, Roger D (2024). Using viral diversity to identify HIV-1 variants under HLA-dependent selection in a systematic viral genome-wide screen. PLoS pathogens, 20(8), e1012385. Public Library of Science 10.1371/journal.ppat.1012385
Amstutz, Alain; Chammartin, Frédérique; Audigé, Annette; Eichenberger, Anna L; Braun, Dominique L; Amico, Patrizia; Stoeckle, Marcel P; Hasse, Barbara; Papadimitriou-Olivgeris, Matthaios; Manuel, Oriol; Bongard, Cédric; Schuurmans, Macé M; Hage, René; Damm, Dominik; Tamm, Michael; Mueller, Nicolas J; Rauch, Andri; Günthard, Huldrych F; Koller, Michael T; Schönenberger, Christof M; ... (2024). Antibody and T-cell response to bivalent booster SARS-CoV-2 vaccines in people with compromised immune function (COVERALL-3). (In Press). The journal of infectious diseases Oxford University Press 10.1093/infdis/jiae291
Thoueille, Paul; Saldanha, Susana Alves; Schaller, Fabian; Choong, Eva; Veuve, François; Munting, Aline; Cavassini, Matthias; Braun, Dominique; Günthard, Huldrych F; Duran Ramirez, Jessy J; Surial, Bernard; Furrer, Hansjakob; Rauch, Andri; Ustero, Pilar; Calmy, Alexandra; Stöckle, Marcel; Di Benedetto, Caroline; Bernasconi, Enos; Schmid, Patrick; Marzolini, Catia; ... (2024). Population Pharmacokinetics of Cabotegravir Following Oral Administration and Long-Acting Intramuscular Injection in Real-World People with HIV. Clinical pharmacology and therapeutics, 115(6), pp. 1450-1459. Wiley 10.1002/cpt.3240
Turk, Teja; Labarile, Marco; Braun, Dominique L; Rauch, Andri; Stöckle, Marcel; Cavassini, Matthias; Hoffmann, Matthias; Calmy, Alexandra; Bernasconi, Enos; Notter, Julia; Pasin, Chloé; Günthard, Huldrych F; Kouyos, Roger D (2024). CHARACTERIZATION AND DETERMINANTS OF LONG-TERM IMMUNE RECOVERY UNDER SUPPRESSIVE ANTIRETROVIRAL THERAPY. Journal of acquired immune deficiency syndromes, 96(1), pp. 68-76. Wolters Kluwer Health 10.1097/QAI.0000000000003388
Byonanebye, Dathan M; Polizzotto, Mark N; Maltez, Fernando; Rauch, Andri; Grabmeier-Pfistershammer, Katharina; Wit, Ferdinand; De Wit, Stéphane; Castagna, Antonella; d'Arminio Monforte, Antonella; Mussini, Cristina; Wasmuth, Jan-Christian; Fontas, Eric; Abela, Irene; Sarcletti, Mario; Bansi-Matharu, Loveleen; Jaschinski, Nadine; Peters, Lars; Hosein, Sean R; Vannappagari, Vani; Cohen, Cal; ... (2024). Associations between change in BMI and the risk of hypertension and dyslipidaemia in people receiving integrase strand-transfer inhibitors, tenofovir alafenamide, or both compared with other contemporary antiretroviral regimens: a multicentre, prospective observational study from the RESPOND consortium cohorts. The Lancet HIV, 11(5), e321-e332. Elsevier 10.1016/S2352-3018(23)00328-4
Begré, Lorin; Boyd, Anders; Plissonnier, Marie-Laure; Testoni, Barbara; Salazar-Vizcaya, Luisa; Suter-Riniker, Franziska; Scholtès, Caroline; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Hirsch, Hans H; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Wandeler, Gilles; Zoulim, Fabien; Rauch, Andri (2024). Circulating HBV RNA and hepatitis B core-related antigen trajectories in persons with HIV/HBV coinfection and HBsAg loss on tenofovir therapy. (In Press). The journal of infectious diseases Oxford University Press 10.1093/infdis/jiae189
Chammartin, Frédérique; Griessbach, Alexandra; Kusejko, Katharina; Audigé, Annette; Epp, Selina; Stoeckle, Marcel P; Eichenberger, Anna L; Amstutz, Alain; Schoenenberger, Christof M; Hasse, Barbara; Braun, Dominique L; Rauch, Andri; Trkola, Alexandra; Briel, Matthias; Bucher, Heiner C; Günthard, Huldrych F; Speich, Benjamin; Abela, Irene A (2024). Bridging the Gap: identifying factors impacting mRNA SARS-CoV-2 vaccine booster response in people living with HIV-1. AIDS, 38(2), pp. 217-222. Wolters Kluwer Health 10.1097/QAD.0000000000003751
Riebensahm, Carlotta; Berzigotti, Annalisa; Surial, Bernard; Haerry, David; Günthard, Huldrych F; Tarr, Philip E; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles (2024). Decreased physical activity and prolonged sitting time are associated with liver steatosis in people with HIV. Journal of acquired immune deficiency syndromes, 95(2), pp. 179-184. Wolters Kluwer Health 10.1097/QAI.0000000000003328
van Santen, Daniela K; Stewart, Ashleigh; Doyle, Joseph S; Stoové, Mark A; Asselin, Jason; Klein, Marina B; Young, Jim; Berenguer, Juan; Jarrin, Inmaculada; Lacombe, Karine; Wittkop, Linda; Leleux, Olivier; Salmon, Dominique; Bonnet, Fabrice; Rauch, Andri; Mugglin, Catrina; Matthews, Gail; Prins, Maria; Smit, Colette; Boyd, Anders; ... (2024). Cohort Profile: International Collaboration on Hepatitis C Elimination in HIV Cohorts (InCHEHC). International journal of epidemiology, 53(1) Oxford University Press 10.1093/ije/dyad154
Begré, Lorin; Boyd, Anders; Salazar-Vizcaya, Luisa; Suter, Franziska; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Zoulim, Fabien; Wandeler, Gilles; Rauch, Andri (2024). Long-term quantitative hepatitis B surface antigen (HBsAg) trajectories in persons with and without HBsAg loss on tenofovir-containing antiretroviral therapy. HIV medicine, 25(2), pp. 291-298. Wiley 10.1111/hiv.13561
Requena, Maria-Bernarda; Protopopescu, Camelia; Stewart, Ashleigh C; van Santen, Daniela K; Klein, Marina B; Jarrin, Inmaculada; Berenguer, Juan; Wittkop, Linda; Salmon, Dominique; Rauch, Andri; Prins, Maria; van der Valk, Marc; Sacks-Davis, Rachel; Hellard, Margaret E; Carrieri, Patrizia; Lacombe, Karine (2024). All-cause mortality before and after DAA availability among people living with HIV and HCV: An international comparison between 2010 and 2019. The international journal of drug policy, 124(104311), p. 104311. Elsevier 10.1016/j.drugpo.2023.104311
Sacks-Davis, Rachel; van Santen, Daniela K; Boyd, Anders; Young, Jim; Stewart, Ashleigh; Doyle, Joseph S; Rauch, Andri; Mugglin, Catrina; Klein, Marina; van der Valk, Marc; Smit, Colette; Jarrin, Inmaculada; Berenguer, Juan; Lacombe, Karine; Requena, Maria-Bernarda; Wittkop, Linda; Leleux, Olivier; Bonnet, Fabrice; Salmon, Dominique; Matthews, Gail V; ... (2024). Changes in incidence of hepatitis C virus reinfection and access to direct-acting antiviral therapies in people with HIV from six countries, 2010-19: an analysis of data from a consortium of prospective cohort studies. The Lancet HIV, 11(2), e106-e116. Elsevier 10.1016/S2352-3018(23)00267-9
Baumann, Lukas; Braun, Dominique L; Cavassini, Matthias; Stoeckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Haerry, David; Béguelin, Charles; Fux, Christoph A; Wandeler, Gilles; Surial, Bernard; Rauch, Andri (2024). Long-term trends in hepatitis C prevalence, treatment uptake and liver-related events in the Swiss HIV Cohort Study. Liver international, 44(1), pp. 169-179. Wiley 10.1111/liv.15754
Thoueille, Paul; Saldanha, Susana Alves; Schaller, Fabian; Choong, Eva; Munting, Aline; Cavassini, Matthias; Braun, Dominique; Günthard, Huldrych F.; Kusejko, Katharina; Surial, Bernard; Furrer, Hansjakob; Rauch, Andri; Rougemont, Mathieu; Ustero, Pilar; Calmy, Alexandra; Stöckle, Marcel; Marzolini, Catia; Di Benedetto, Caroline; Bernasconi, Enos; Schmid, Patrick; ... (2024). Real-world trough concentrations and effectiveness of long-acting cabotegravir and rilpivirine: a multicenter prospective observational study in Switzerland. The Lancet regional health. Europe, 36, p. 100793. Elsevier 10.1016/j.lanepe.2023.100793
Zeeb, Marius; Pasin, Chloé; Cavassini, Matthias; Bieler-Aeschlimann, Mélanie; Frischknecht, Paul; Kusejko, Katharina; Fellay, Jacques; Blanquart, François; Metzner, Karin J; Neumann, Kathrin; Jörimann, Lisa; Tschumi, Jasmin; Bernasconi, Enos; Huber, Michael; Kovari, Helen; Leuzinger, Karoline; Notter, Julia; Perreau, Matthieu; Rauch, Andri; Ramette, Alban; ... (2024). Self-reported neurocognitive complaints in the Swiss HIV Cohort Study: a viral genome-wide association study. Brain Communications, 6(4) Oxford University Press 10.1093/braincomms/fcae188
Caraballo Cortés, Kamila; Osuch, Sylwia; Perlejewski, Karol; Radkowski, Marek; Janiak, Maciej; Berak, Hanna; Rauch, Andri; Fehr, Jan S; Hoffmann, Matthias; Günthard, Huldrych F; Metzner, Karin J (2023). T-Cell Exhaustion in HIV-1/Hepatitis C Virus Coinfection Is Reduced After Successful Treatment of Chronic Hepatitis C. Open Forum Infectious Diseases, 10(11), ofad514. Oxford University Press 10.1093/ofid/ofad514
Griessbach, Alexandra; Chammartin, Frédérique; Abela, Irene A; Amico, Patrizia; Stoeckle, Marcel P; Eichenberger, Anna L; Hasse, Barbara; Braun, Dominique L; Schuurmans, Macé M; Müller, Thomas F; Tamm, Michael; Audigé, Annette; Mueller, Nicolas J; Rauch, Andri; Günthard, Huldrych F; Koller, Michael T; Trkola, Alexandra; Epp, Selina; Amstutz, Alain; Schönenberger, Christof M; ... (2023). Antibody Response After the Third SARS-CoV-2 Vaccine in Solid Organ Transplant Recipients and People Living With HIV (COVERALL-2). Open Forum Infectious Diseases, 10(11), ofad536. Oxford University Press 10.1093/ofid/ofad536
Martinello, Marianne; Carson, Joanne M; Van Der Valk, Marc; Rockstroh, Jürgen K; Ingiliz, Patrick; Hellard, Margaret; Nelson, Mark; Lutz, Thomas; Bhagani, Sanjay; Kim, Arthur Y; Hull, Mark; Cordes, Christiane; Moon, Juhi; Feld, Jordan J; Gane, Ed; Rauch, Andri; Bruneau, Julie; Tu, Elise; Applegate, Tanya; Grebely, Jason; ... (2023). Reinfection incidence and risk among people treated for recent hepatitis C virus infection: the react study. AIDS, 37(12), pp. 1883-1890. Wolters Kluwer Health 10.1097/QAD.0000000000003651
Surial, Bernard; Chammartin, Frédérique; Damas, José; Calmy, Alexandra; Haerry, David; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Fux, Christoph A; Tarr, Philip; Günthard, Huldrych F; Wandeler, Gilles; Rauch, Andri (2023). Impact of integrase inhibitors on cardiovascular disease events in people with HIV starting antiretroviral therapy. Clinical infectious diseases, 77(5), pp. 729-737. Oxford University Press 10.1093/cid/ciad286
Trickey, Adam; Ingle, Suzanne M; Boyd, Anders; Gill, M John; Grabar, Sophie; Jarrin, Inma; Obel, Niels; Touloumi, Giota; Zangerle, Robert; Rauch, Andri; Rentsch, Christopher T; Satre, Derek D; Silverberg, Michael J; Bonnet, Fabrice; Guest, Jodie; Burkholder, Greer; Crane, Heidi; Teira, Ramon; Berenguer, Juan; Wyen, Christoph; ... (2023). Contribution of alcohol use in HIV/hepatitis C virus co-infection to all-cause and cause-specific mortality: A collaboration of cohort studies. Journal of viral hepatitis, 30(9), pp. 775-786. Blackwell Science 10.1111/jvh.13863
McLaren, Paul J; Porreca, Immacolata; Iaconis, Gennaro; Mok, Hoi Ping; Mukhopadhyay, Subhankar; Karakoc, Emre; Cristinelli, Sara; Pomilla, Cristina; Bartha, István; Thorball, Christian W; Tough, Riley H; Angelino, Paolo; Kiar, Cher S; Carstensen, Tommy; Fatumo, Segun; Porter, Tarryn; Jarvis, Isobel; Skarnes, William C; Bassett, Andrew; DeGorter, Marianne K; ... (2023). Author Correction: Africa-specific human genetic variation near CHD1L associates with HIV-1 load. Nature, 621(7979), E42. Springer Nature 10.1038/s41586-023-06591-7
Chalouni, Mathieu; Trickey, Adam; Ingle, Suzanne M; Sepuvelda, Maria Antonia; Gonzalez, Juan; Rauch, Andri; Crane, Heidi M; Gill, M John; Rebeiro, Peter F; Rockstroh, Jürgen K; Franco, Ricardo A; Touloumi, Giota; Neau, Didier; Laguno, Montserrat; Rappold, Michaela; Smit, Colette; Sterne, Jonathan Ac; Wittkop, Linda (2023). Impact of Hepatitis C cure on risk of mortality and morbidity in people with HIV after ART initiation. AIDS, 37(10), pp. 1573-1581. Wolters Kluwer Health 10.1097/QAD.0000000000003594
Koopsen, Jelle; Matthews, Gail; Rockstroh, Juergen; Applegate, Tanya L; Bhagani, Sanjay; Rauch, Andri; Grebely, Jason; Sacks-Davis, Rachel; Ingiliz, Patrick; Boesecke, Christoph; Rebers, Sjoerd; Feld, Jordan; Bruneau, Julie; Martinello, Marianne; Hellard, Margaret; Dore, Gregory J; Schinkel, Janke; van der Valk, Marc (2023). Hepatitis C virus transmission between eight high-income countries among men who have sex with men: a whole-genome analysis. The Lancet Microbe, 4(8), e622-e631. Elsevier 10.1016/S2666-5247(23)00108-8
McLaren, Paul J; Porreca, Immacolata; Iaconis, Gennaro; Mok, Hoi Ping; Mukhopadhyay, Subhankar; Karakoc, Emre; Cristinelli, Sara; Pomilla, Cristina; Bartha, István; Thorball, Christian W; Tough, Riley H; Angelino, Paolo; Kiar, Cher S; Carstensen, Tommy; Fatumo, Segun; Porter, Tarryn; Jarvis, Isobel; Skarnes, William C; Bassett, Andrew; DeGorter, Marianne K; ... (2023). Africa-specific human genetic variation near CHD1L associates with HIV-1 load. Nature, 620(7976), pp. 1025-1030. Springer Nature 10.1038/s41586-023-06370-4
Mugglin, Catrina; Hamusonde, Kalongo; Salazar-Vizcaya, Luisa; Kusejko, Katharina; Nicca, Dunja; Haerry, David; Braun, Dominique L; Stoeckle, Marcel; Kouyos, Roger; Calmy, Alexandra; Cavassini, Matthias; Cipriani, Michela; Bernasconi, Enos; Rauch, Andri; Hachfeld, Anna (2023). Sexual Behaviour and STI Incidence in Sexually Active MSM Living With HIV in Times of COVID-19. Open Forum Infectious Diseases, 10(8), ofad399. Oxford University Press 10.1093/ofid/ofad399
Bigler, Dina; Surial, Bernard; Hauser, Christoph Victor; Konrad, Torsten; Furrer, Hansjakob; Rauch, Andri; Aebi-Popp, Karoline (2023). Prevalence of STIs and people's satisfaction in a general population STI testing site in Bern, Switzerland. Sexually transmitted infections, 99(4), pp. 268-271. BMJ Publishing Group 10.1136/sextrans-2022-055472
Surial, Bernard; Ramírez Mena, Adrià; Roumet, Marie; Limacher, Andreas; Smit, Colette; Leleux, Olivier; Mocroft, Amanda; van der Valk, Marc; Bonnet, Fabrice; Peters, Lars; Rockstroh, Jürgen K; Günthard, Huldrych F; Berzigotti, Annalisa; Rauch, Andri; Wandeler, Gilles (2023). External validation of the PAGE-B score for HCC risk prediction in people living with HIV/HBV coinfection. Journal of hepatology, 78(5), pp. 947-957. Elsevier 10.1016/j.jhep.2022.12.029
Muri, Jonathan; Cecchinato, Valentina; Cavalli, Andrea; Shanbhag, Akanksha A; Matkovic, Milos; Biggiogero, Maira; Maida, Pier Andrea; Moritz, Jacques; Toscano, Chiara; Ghovehoud, Elaheh; Furlan, Raffaello; Barbic, Franca; Voza, Antonio; De Nadai, Guendalina; Cervia, Carlo; Zurbuchen, Yves; Taeschler, Patrick; Murray, Lilly A; Danelon-Sargenti, Gabriela; Moro, Simone; ... (2023). Autoantibodies against chemokines post-SARS-CoV-2 infection correlate with disease course. Nature immunology, 24(4), pp. 604-611. Nature Publishing Group 10.1038/s41590-023-01445-w
Isfordink, Cas J; Boyd, Anders; Sacks-Davis, Rachel; van Santen, Daniela K; Smit, Colette; Martinello, Marianne; Stoove, Mark; Berenguer, Juan; Wittkop, Linda; Klein, Marina B; Rauch, Andri; Salmon, Dominique; Lacombe, Karine; Stewart, Ashleigh; Schinkel, Janke; Doyle, Joseph S; Hellard, Margaret; van der Valk, Marc; Matthews, Gail V (2023). Reasons for not commencing direct-acting antiviral treatment despite unrestricted access for individuals with HIV and hepatitis C virus: a multinational, prospective cohort study. The lancet. Public health, 8(4), e294-e304. Elsevier 10.1016/S2468-2667(23)00056-7
Griessbach, Alexandra; Chammartin, Frédérique; Abela, Irene A; Amico, Patrizia; Stoeckle, Marcel P; Eichenberger, Anna L; Hasse, Barbara; Braun, Dominique L; Schuurmans, Macé M; Müller, Thomas F; Tamm, Michael; Audigé, Annette; Mueller, Nicolas J; Rauch, Andri; Günthard, Huldrych F; Koller, Michael T; Trkola, Alexandra; Epp, Selina; Amstutz, Alain; Schönenberger, Christof M; ... (2023). Antibody Response After Third Vaccination With mRNA-1273 or BNT162b2: Extension of a Randomized Controlled SARS-CoV-2 Noninferiority Vaccine Trial in Patients With Different Levels of Immunosuppression (COVERALL-2). Open Forum Infectious Diseases, 10(4), ofad150. Oxford University Press 10.1093/ofid/ofad150
Béguelin, C; Atkinson, A; Boyd, A; Falconer, K; Kirkby, N; Suter-Riniker, F; Günthard, H F; Rockstroh, J K; Mocroft, A; Rauch, A; Peters, L; Wandeler, G (2023). Hepatitis delta infection among persons living with HIV in Europe. Liver international, 43(4), pp. 819-828. Wiley 10.1111/liv.15519
Balakrishna, Suraj; Loosli, Tom; Zaheri, Maryam; Frischknecht, Paul; Huber, Michael; Kusejko, Katharina; Yerly, Sabine; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Wymant, Chris; Fraser, Christophe; Kellam, Paul; Gall, Astrid; Hirsch, Hans H; Stoeckle, Marcel; Rauch, Andri; Cavassini, Matthias; Bernasconi, Enos; Notter, Julia; ... (2023). Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1. The journal of antimicrobial chemotherapy, 78(3), pp. 656-664. Oxford University Press 10.1093/jac/dkac430
Hofmann, Eveline; Surial, Bernard; Boillat-Blanco, Noémie; Günthard, Huldrych F; Stöckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Suter-Riniker, Franziska; Rauch, Andri; Wandeler, Gilles; Béguelin, Charles (2023). HBV REPLICATION DURING TENOFOVIR THERAPY IS FREQUENT IN HIV/HBV-COINFECTION. Clinical infectious diseases, 76(4), pp. 730-733. Oxford University Press 10.1093/cid/ciac823
Labarile, Marco; Loosli, Tom; Zeeb, Marius; Kusejko, Katharina; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph; Günthard, Huldrych F; Pasin, Chloé; Kouyos, Roger D (2023). Quantifying and predicting ongoing Human Immunodeficiency Virus Type 1 (HIV-1) transmission dynamics in Switzerland using a distance-based clustering approach. The journal of infectious diseases, 227(4), pp. 554-564. Oxford University Press 10.1093/infdis/jiac457
Hamusonde, Kalongo; Nicca, Dunja; Günthard, Huldrych F; Stöckle, Marcel; Darling, Katharine Ea; Calmy, Alexandra; Bernasconi, Enos; Haerry, David; Schmid, Patrick; Kouyos, Roger D; Rauch, Andri; Salazar-Vizcaya, Luisa (2023). Triggers of change in sexual behavior among people with HIV: The Swiss U = U statement and Covid-19 compared. The journal of infectious diseases, 227(3), pp. 407-411. Oxford University Press 10.1093/infdis/jiac459
van Santen, Daniela K; Sacks-Davis, Rachel; Stewart, Ashleigh; Boyd, Anders; Young, Jim; van der Valk, Marc; Smit, Colette; Rauch, Andri; Braun, Dominique L; Jarrin, Inmaculada; Berenguer, Juan; Lazarus, Jeffrey V; Lacombe, Karine; Requena, Maria-Bernarda; Wittkop, Linda; Leleux, Olivier; Salmon, Dominique; Bonnet, Fabrice; Matthews, Gail; Doyle, Joseph S; ... (2023). Treatment as prevention effect of direct-acting antivirals on primary hepatitis C virus incidence: Findings from a multinational cohort between 2010 and 2019. EClinicalMedicine, 56, p. 101810. Elsevier 10.1016/j.eclinm.2022.101810
Bosetti, Davide; Mugglin, Catrina; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Braun, Dominique; Notter, Julia; Haerry, David; Hampel, Benjamin; Kovari, Helen; Bernasconi, Enos; Wandeler, Gilles; Rauch, Andri (2022). Risk Factors and Incidence of Sexually Transmitted Infections in the Swiss HIV Cohort Study. Open Forum Infectious Diseases, 9(12) Oxford University Press 10.1093/ofid/ofac592
Lodi, Sara; Klein, Marina; Rauch, Andri; Epstein, Rachel; Wittkop, Linda; Logan, Roger; Rentsch, Christopher T; Justice, Amy C; Touloumi, Giota; Berenguer, Juan; Jarrin, Inma; Egger, Matthias; Puoti, Massimo; D'Arminio Monforte, Antonella; Gill, John; Salmon Ceron, Dominique; van Sighem, Ard; Linas, Benjamin; van der Valk, Marc and Hernán, Miguel A (2022). Sustained virological response after treatment with direct antiviral agents in individuals with HIV and hepatitis C co-infection. Journal of the International AIDS Society, 25(12), e26048. BioMed Central 10.1002/jia2.26048
Aebi-Popp, Karoline; Kahlert, Christian R; Crisinel, Pierre Alex; Decosterd, Laurent; Saldanha, Susana Alves; Hoesli, Irene; Martinez De Tejada, Begona; Duppenthaler, Andrea; Rauch, Andri; Marzolini, Catia (2022). Transfer of antiretroviral drugs into breastmilk: a prospective study from the Swiss Mother and Child HIV Cohort Study. The journal of antimicrobial chemotherapy, 77(12), pp. 3436-3442. Oxford University Press 10.1093/jac/dkac337
Kusejko, Katharina; Salazar-Vizcaya, Luisa; Shah, Cyril; Stöckle, Marcel; Béguelin, Charles; Schmid, Patrick; Ongaro, Marie; Darling, Katherine; Bernasconi, Enos; Rauch, Andri; Kouyos, Roger D; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S; Braun, Dominique L (2022). Sustained effect on hepatitis C elimination among men who have sex with men in the Swiss HIV Cohort Study: A systematic re-screening for hepatitis C RNA two years following a nation-wide elimination program. Clinical infectious diseases, 75(10), pp. 1723-1731. Oxford University Press 10.1093/cid/ciac273
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Kusejko, Katharina; Bachmann, Nadine; Chaudron, Sandra E; Nguyen, Huyen; Braun, Dominique L; Hampel, Benjamin; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Rauch, Andri; Günthard, Huldrych F; Kouyos, Roger D (2019). A systematic phylogenetic approach to study the interaction of HIV-1 with coinfections, non-communicable and opportunistic diseases. The journal of infectious diseases, 220(2), pp. 244-253. Oxford University Press 10.1093/infdis/jiz093
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Salazar Vizcaya, Luisa Paola; Kouyos, Roger D; Metzner, Karin J; Caraballo Cortes, Kamila; Böni, Jürg; Shah, Cyril; Fehr, Jan; Braun, Dominique L; Bernasconi, Enos; Mbunkah, Herbert A; Hoffmann, Matthias; Labhardt, Niklaus; Cavassini, Matthias; Rougemont, Mathieu; Günthard, Huldrych F; Keiser, Olivia; Rauch, Andri (2019). Changing trends in international versus domestic HCV transmission in HIV-positive MSM: A perspective for the DAA scale-up era. The journal of infectious diseases, 220(1), pp. 91-99. Oxford University Press 10.1093/infdis/jiz069
Braun, Dominique L; Hampel, Benjamin; Kouyos, Roger; Nguyen, Huyen; Shah, Cyril; Flepp, Markus; Stöckle, Marcel; Conen, Anna; Béguelin, Charles Antoine; Künzler-Heule, Patrizia; Nicca, Dunja; Schmid, Patrick; Delaloye, Julie; Rougemont, Mathieu; Bernasconi, Enos; Rauch, Andri; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S (2019). High Cure Rates With Grazoprevir-Elbasvir With or Without Ribavirin Guided by Genotypic Resistance Testing Among Human Immunodeficiency Virus/Hepatitis C Virus–coinfected Men Who Have Sex With Men. Clinical infectious diseases, 68(4), pp. 569-576. The University of Chicago Press 10.1093/cid/ciy547
Braun, Dominique L; Hampel, Benjamin; Martin, Eileen; Kouyos, Roger; Kusejko, Katharina; Grube, Christina; Flepp, Markus; Stöckle, Marcel; Conen, Anna; Béguelin, Charles Antoine; Schmid, Patrick; Delaloye, Julie; Rougemont, Mathieu; Bernasconi, Enos; Rauch, Andri; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S (2019). High Number of Potential Transmitters Revealed in a Population-based Systematic Hepatitis C Virus RNA Screening Among Human Immunodeficiency Virus-infected Men Who Have Sex With Men. Clinical infectious diseases, 68(4), pp. 561-568. Oxford University Press 10.1093/cid/ciy545
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Walti, Laura Naëmi; Steinrücken, Julia; Rauch, Andri; Wandeler, Gilles (2018). Tenofovir Alafenamide in Multimorbid HIV-Infected Patients With Prior Tenofovir-Associated Renal Toxicity. Open Forum Infectious Diseases, 5(11), ofy275. Oxford University Press 10.1093/ofid/ofy275
Peters, Lars; Laut, Kamilla; Resnati, Chiara; Del Campo, Santos; Leen, Clifford; Falconer, Karolin; Trofimova, Tatyana; Paduta, Dzmitry; Gatell, Jose; Rauch, Andri; Lacombe, Karine; Domingo, Pere; Chkhartishvili, Nikoloz; Zangerle, Robert; Matulionyte, Raimonda; Mitsura, Viktar; Benfield, Thomas; Zilmer, Kai; Khromova, Irina; Lundgren, Jens; ... (2018). Uptake of HCV treatment in HIV/HCV coinfected patients across europe in the era of direct-acting antivirals. AIDS, 32(14), pp. 1995-2004. Lippincott Williams & Wilkins 10.1097/QAD.0000000000001928
Kouyos, Roger D; Rusert, Peter; Kadelka, Claus; Huber, Michael; Marzel, Alex; Ebner, Hanna; Schanz, Merle; Liechti, Thomas; Friedrich, Nikolas; Braun, Dominique L; Scherrer, Alexandra U; Weber, Jacqueline; Uhr, Therese; Baumann, Nicolas S; Leemann, Christine; Kuster, Herbert; Chave, Jean-Philippe; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; ... (2018). Tracing HIV-1 strains that imprint broadly neutralizing antibody responses. Nature, 561(7723), pp. 406-410. Macmillan Journals Ltd. 10.1038/s41586-018-0517-0
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Ryom, L; Boesecke, C; Bracchi, M; Ambrosioni, J; Pozniak, A; Arribas, J; Behrens, G; Mallon, Pgm; Puoti, M; Rauch, Andri; Miro, J M; Kirk, O; Marzolini, C; Lundgren, J D; Battegay, M (2018). Highlights of the 2017 European AIDS Clinical Society (EACS) Guidelines for the treatment of adult HIV-positive persons version 9.0. HIV medicine, 19(5), pp. 309-315. Blackwell Science 10.1111/hiv.12600
Marzel, Alex; Kusejko, Katharina; Weber, Rainer; Bruggmann, Philip; Rauch, Andri; Roth, Jan A; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Günthard, Huldrych F; Kouyos, Roger D (2018). The Cumulative Impact of Harm Reduction on the Swiss HIV Epidemic: Cohort Study, Mathematical Model, and Phylogenetic Analysis. Open Forum Infectious Diseases, 5(5), ofy078. Oxford University Press 10.1093/ofid/ofy078
Sacks-Davis, Rachel; Doyle, Joseph S; Rauch, Andri; Béguelin, Charles Antoine; Pedrana, Alisa E; Matthews, Gail V; Prins, Maria; van der Valk, Marc; Klein, Marina B; Saeed, Sahar; Lacombe, Karine; Chkhartishvili, Nikoloz; Altice, Frederick L; Hellard, Margaret E (2018). Linkage and retention in HCV care for HIV-infected populations: early data from the DAA era. Journal of the International AIDS Society, 21 Suppl 2(Suppl 2), e25051. BioMed Central 10.1002/jia2.25051
Perrone, Carlo; Rauch, Andri; Furrer, Hansjakob; Hug, Markus; Wandeler, Gilles (2018). Fewer pills do not mean fewer drug-drug interactions: severe rhabdomyolysis on Elvitegravir/Cobicistat and statin treatment. AIDS, 32(5), pp. 676-678. Lippincott Williams & Wilkins 10.1097/QAD.0000000000001746
Béguelin, Charles Antoine; Suter, Annatina; Bernasconi, Enos; Fehr, Jan; Kovari, Helen; Bucher, Heiner C; Stoeckle, Marcel; Cavassini, Mathias; Rougemont, Mathieu; Schmid, Patrick; Wandeler, Gilles; Rauch, Andri (2018). Trends in HCV treatment uptake, efficacy and impact on liver fibrosis in the Swiss HIV Cohort Study. Liver international, 38(3), pp. 424-431. Blackwell Munksgaard 10.1111/liv.13528
do Couto Pires, João Pedro; Kuenzli, Esther; Hauser, Christoph; Tinguely, Regula; Kasraian Fard, Sara; Atkinson, Andrew; Rauch, Andri; Furrer, Hansjakob; Perreten, Vincent; Marschall, Jonas; Hatz, Christoph; Endimiani, Andrea (2018). Intestinal Colonization with Extended-Spectrum Cephalosporin-Resistant Enterobacteriaceae in Different Populations in Switzerland: Prevalence, Risk Factors and Molecular Features. Journal of global antimicrobial resistance, 12, pp. 17-19. Elsevier 10.1016/j.jgar.2017.11.007
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Salazar-Vizcaya, Luisa; Kouyos, Roger D; Fehr, Jan; Braun, Dominique; Estill, Janne Anton Markus; Bernasconi, Enos; Delaloye, Julie; Stöckle, Marcel; Schmid, Patrick; Rougemont, Mathieu; Wandeler, Gilles; Günthard, Huldrych F; Keiser, Olivia; Rauch, Andri (2018). On the potential of a short-term intensive intervention to interrupt HCV transmission in HIV-positive men who have sex with men: a mathematical modelling study. Journal of viral hepatitis, 25(1), pp. 10-18. Blackwell Science 10.1111/jvh.12752
Lucas, Michaela; Deshpande, Pooja; James, Ian; Rauch, Andri; Pfafferott, Katja; Gaylard, Elouise; Merani, Shahzma; Plauzolles, Anne; Lucas, Andrew; McDonnell, Wyatt; Kalams, Spyros; Pilkinton, Mark; Chastain, Cody; Barnett, Louise; Prosser, Amy; Mallal, Simon; Fitzmaurice, Karen; Drummer, Heidi; Ansari, M. Azim; Pedergnana, Vincent; ... (2018). Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome. Scientific Reports, 8(1), p. 7224. Nature Publishing Group 10.1038/s41598-018-25559-6
Bruggmann, Philip; Blach, Sarah; Deltenre, Pierre; Fehr, Jan; Kouyos, Roger; Lavanchy, Daniel; Müllhaupt, Beat; Rauch, Andri; Razavi, Homie; Schmid, Patrick; Semela, David; Stoeckle, Marcel; Negro, Franco (2017). Hepatitis C virus dynamics among intravenous drug users suggest that an annual treatment uptake above 10% would eliminate the disease by 2030. Swiss medical weekly, 147(w14543), w14543. EMH Schweizerischer Ärzteverlag 10.4414/smw.2017.14543
Jegerlehner, Sabrina; Rauch, Andri; Novak, Urban (2017). Recurrent Inflammatory Flares in HIV-Infected Patients: Consider Castleman Disease! Journal of investigative medicine high impact case reports, 5(3), p. 2324709617725094. Sage 10.1177/2324709617725094
Do Couto Pires, Joao Pedro; Bernasconi, Odette Joëlle; Hauser, Christoph; Tinguely, Regula; Atkinson, Andrew; Perreten, Vincent; Donà, Valentina; Rauch, Andri; Furrer, Hansjakob; Endimiani, Andrea (2017). Erratum to 'Intestinal colonisation with extended-spectrum cephalosporin- and colistin-resistant Enterobacteriaceae in HIV-positive individuals in Switzerland: molecular features and risk factors' [International Journal of Antimicrobial Agents 49/4 (2017) 519-521]. International journal of antimicrobial agents, 50(2), p. 276. Elsevier 10.1016/j.ijantimicag.2017.05.002
Béguelin, Charles Antoine; Friolet, Nicole; Moradpour, Darius; Sahli, Roland; Suter, Franziska Marta; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Atkinson, Andrew; Rauch, Andri; Wandeler, Gilles (2017). Impact of tenofovir on hepatitis delta virus replication in the Swiss HIV Cohort Study. Clinical infectious diseases, 64(9), pp. 1275-1278. Oxford University Press 10.1093/cid/cix125
Do Couto Pires, Joao Pedro; Bernasconi, Odette Joëlle; Hauser, Christoph; Tinguely, Regula; Atkinson, Andrew; Perreten, Vincent; Donà, Valentina; Rauch, Andri; Furrer, Hansjakob; Endimiani, Andrea (2017). Intestinal colonisation with extended-spectrum cephalosporin- and colistin-resistant Enterobacteriaceae in HIV-positive individuals in Switzerland: molecular features and risk factors. International journal of antimicrobial agents, 49(4), pp. 519-521. Elsevier 10.1016/j.ijantimicag.2017.02.004
Eichenberger, Anna; Buechi, Annina E; Neumayr, Andreas; Hatz, Chistroph; Rauch, Andri; Huguenot, Marc; Diamantis-Karamitopoulou, Eva; Staehelin, Cornelia Johanna (2017). A severe case of visceral leishmaniasis and liposomal amphotericin B treatment failure in an immunosuppressed patient 15 years after exposure. BMC infectious diseases, 17(1), p. 81. BioMed Central 10.1186/s12879-017-2192-4
Béguelin, Charles Antoine; Moradpour, Darius; Sahli, Roland; Suter, Franziska Marta; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Braun, Dominique; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles (2017). Hepatitis delta-associated mortality in HIV/HBV-coinfected patients. Journal of hepatology, 66(2), pp. 297-303. Elsevier 10.1016/j.jhep.2016.10.007
Kovari, Helen; Rauch, Andri; Kouyos, Roger; Rougemont, Mathieu; Cavassini, Matthias; Schmid, Patrick; Stöckle, Marcel; Bernasconi, Enos; Weber, Rainer; Ledergerber, Bruno (2016). Hepatitis C infection and the risk of non-liver-related morbidity and mortality in HIV-positive persons in the Swiss HIV Cohort Study. Clinical infectious diseases, ciw809. Oxford University Press 10.1093/cid/ciw809
Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; Schanz, Merle; Huber, Michael; Braun, Dominique L; Hozé, Nathanael; Scherrer, Alexandra; Magnus, Carsten; Weber, Jacqueline; Uhr, Therese; Cippa, Valentina; Thorball, Christian W; Kuster, Herbert; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; ... (2016). Determinants of HIV-1 broadly neutralizing antibody induction. Nature medicine, 22(11), pp. 1260-1267. Nature Publishing Group 10.1038/nm.4187
Wandeler, Gilles; Mulenga, Lloyd; Vinikoor, Michael J; Kovari, Helen; Battegay, Manuel; Calmy, Alexandra; Cavassini, Matthias; Bernasconi, Enos; Schmid, Patrick; Bolton-Moore, Carolyn; Sinkala, Edford; Chi, Benjamin H; Egger, Matthias; Rauch, Andri (2016). Liver fibrosis in treatment-naïve HIV-infected and HIV/HBV co-infected patients: Zambia and Switzerland compared. International journal of infectious diseases, 51, pp. 97-102. Elsevier 10.1016/j.ijid.2016.08.028
Salazar-Vizcaya, Luisa; Kouyos, Roger D; Zahnd, Cindy; Wandeler, Gilles; Battegay, Manuel; Darling, Katharine Elizabeth Ana; Bernasconi, Enos; Calmy, Alexandra; Vernazza, Pietro; Furrer, Hansjakob; Egger, Matthias; Keiser, Olivia; Rauch, Andri (2016). Hepatitis C virus transmission among HIV-infected men who have sex with men: Modeling the effect of behavioral and treatment interventions. Hepatology, 64(6), pp. 1856-1869. Wiley Interscience 10.1002/hep.28769
Zahnd, Cindy; Salazar-Vizcaya, Luisa; Dufour, Jean-François; Müllhaupt, Beat; Wandeler, Gilles; Kouyos, Roger; Estill, Janne; Bertisch, Barbara; Rauch, Andri; Keiser, Olivia (2016). Modelling the impact of deferring HCV treatment on liver-related complications in HIV coinfected men who have sex with men. Journal of hepatology, 65(1), pp. 26-32. Elsevier 10.1016/j.jhep.2016.02.030
Gjærde, Lars I; Shepherd, Leah; Jablonowska, Elzbieta; Lazzarin, Adriano; Rougemont, Mathieu; Darling, Katharine; Battegay, Manuel; Braun, Dominique; Martel-Laferriere, Valerie; Lundgren, Jens D; Rockstroh, Jürgen K; Gill, John; Rauch, Andri; Mocroft, Amanda; Klein, Marina B; Peters, Lars (2016). Trends in incidences and risk factors for hepatocellular carcinoma and other liver events in HIV and hepatitis C virus co-infected individuals from 2001 to 2014: a multi-cohort study. Clinical infectious diseases, 63(6), ciw380. Oxford University Press 10.1093/cid/ciw380
Azevedo, Tiago Castro Lopes; Zwahlen, Marcel; Rauch, Andri; Egger, Matthias; Wandeler, Gilles (2016). Hepatitis C in HIV-infected individuals: a systematic review and meta-analysis of estimated prevalence in Africa. Journal of the International AIDS Society, 19(1), p. 20711. BioMed Central 10.7448/IAS.19.1.20711.
Béguelin, Charles Antoine; Vázquez, Miriam; Moradpour, Darius; Sahli, Roland; Suter, Franziska Marta; Rauch, Andri; Wandeler, Gilles (2016). Uncontrolled hepatitis delta virus infection after initial suppression on tenofovir in a HIV/HBV-coinfected patient. AIDS, 30(3), pp. 530-533. Lippincott Williams & Wilkins 10.1097/QAD.0000000000000972
Aebi-Popp, Karoline; Kahlert, Christian; Rauch, Andri; Mosimann, Beatrice; Baud, David; Low, Nicola; Surbek, Daniel (2016). Heterogeneity in testing practices for infections during pregnancy: national survey across Switzerland. Swiss medical weekly, 146(w14325), w14325. EMH Schweizerischer Ärzteverlag 10.4414/smw.2016.14325
Aebi-Popp, Karoline; Duppenthaler, Andrea; Rauch, Andri; De Gottardi, Andrea; Kahlert, Christian (2016). Vertical transmission of hepatitis C: towards universal antenatal screening in the era of new direct acting antivirals (DAAs)? Short review and analysis of the situation in Switzerland. Journal of virus eradication, 2(1), pp. 52-54. Mediscript
Béguelin, Charles Antoine; Montserrat, Fraga; Wandeler, Gilles; Sahli, Roland; Rauch, Andri; Moradpour, Darius (2016). Hepatitis E. Swiss medical forum, 16(24), pp. 510-514. EMH Schweizerischer Ärzteverlag AG
Ebner, Lukas; Walti, Laura Naëmi; Rauch, Andri; Furrer, Hansjakob; Cusini, Alexia; Meyer, Andreas M J; Weiler, Stefan; Huynh-Do, Uyen; Heverhagen, Johannes; Arampatzis, Spyridon; Christe, Andreas (2016). Clinical Course, Radiological Manifestations, and Outcome of Pneumocystis jirovecii Pneumonia in HIV Patients and Renal Transplant Recipients. PLoS ONE, 11(11), e0164320. Public Library of Science 10.1371/journal.pone.0164320
Hasse, Barbara; Tarr, Philip E; Marques-Vidal, Pedro; Waeber, Gerard; Preisig, Martin; Mooser, Vincent; Valeri, Fabio; Djalali, Sima; Rauch, Andri; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Battegay, Manuel; Weber, Rainer; Senn, Oliver; Vollenweider, Peter; Ledergerber, Bruno; Aubert, V; Barth, J; ... (2015). Strong Impact of Smoking on Multimorbidity and Cardiovascular Risk Among Human Immunodeficiency Virus-Infected Individuals in Comparison With the General Population. Open Forum Infectious Diseases, 2(3), ofv108. Oxford University Press 10.1093/ofid/ofv108
Schaerer, V; Haubitz, Sebastian; Kovari, H; Ledergerber, B; Ambrosioni, J; Cavassini, M; Stoeckle, M; Schmid, P; Decosterd, L; Aouri, M; Böni, J; Günthard, H F; Furrer, Hansjakob; Metzner, K J; Fehr, J; Rauch, Andri (2015). Protease inhibitors to treat hepatitis C in the Swiss HIV Cohort Study: high efficacy but low treatment uptake. HIV medicine, 16(10), pp. 599-607. Blackwell Science 10.1111/hiv.12269
Ussher, James E; Phalora, Prabhjeet; Cosgrove, Cormac; Hannaway, Rachel F; Rauch, Andri; Günthard, Huldrych F; Goulder, Philip; Phillips, Rodney E; Willberg, Christian B; Klenerman, Paul (2015). Molecular Analyses Define Vα7.2-Jα33+ MAIT Cell Depletion in HIV Infection: A Case-Control Study. Medicine, 94(29), e1134. Lippincott Williams & Wilkins 10.1097/MD.0000000000001134
Kovari, Helen; Ledergerber, Bruno; Cavassini, Matthias; Ambrosioni, Juan; Bregenzer, Andrea; Stöckle, Marcel; Bernasconi, Enos; Kouyos, Roger; Weber, Rainer; Rauch, Andri (2015). High Hepatic and Extrahepatic Mortality and Low Treatment Uptake in HCV-coinfected Persons in the Swiss HIV Cohort Study between 2001 and 2013. Journal of hepatology, 63(3), pp. 573-580. Elsevier 10.1016/j.jhep.2015.04.019
Wandeler, Gilles; Schlauri, Marion; Jaquier, Marie-Eve; Rohrbach, Janine; Metzner, Karin J; Fehr, Jan; Ambrosioni, Juan; Cavassini, Matthias; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Keiser, Olivia; Salazar-Vizcaya, Luisa; Furrer, Hansjakob; Rauch, Andri (2015). Incident Hepatitis C Virus Infections in the Swiss HIV Cohort Study: Changes in Treatment Uptake and Outcomes Between 1991 and 2013. Open Forum Infectious Diseases, 2(1), ofv026. Oxford University Press 10.1093/ofid/ofv026
Fitzmaurice, Karen; Hurst, Jacob; Dring, Megan; Rauch, Andri; McLaren, Paul J.; Günthard, Huldrych F.; Gardiner, Clair; Klenerman, Paul (2015). Additive effects of HLA alleles and innate immune genes determine viral outcome in HCV infection. Gut, 64(5), pp. 813-819. BMJ Publishing Group 10.1136/gutjnl-2013-306287
Wandeler, Gilles; Dufour, Jean-François; Bruggmann, Philip; Rauch, Andri (2015). Hepatitis C: a changing epidemic. Swiss medical weekly, 145, w14093. EMH Schweizerischer Ärzteverlag 10.4414/smw.2015.14093
Kovari, Helen; Russmann, Stefan; Ledergerber, Bruno; Müller, Daniel; Rotger, Margalida; Velli, Pablo; Cavassini, Matthias; Ambrosioni, Juan; Bregenzer, Andrea; Stöckle, Marcel; Bernasconi, Enos; Rauch, Andri; Speck, Roberto F (2015). Ribavirin Concentrations Do Not Predict Sustained Virological Response in HIV/HCV-Coinfected Patients Treated with Ribavirin and Pegylated Interferon in the Swiss HIV Cohort Study. PLoS ONE, 10(7), e0133879. Public Library of Science 10.1371/journal.pone.0133879
Vinikoor, Michael J.; Zürcher, Samuel; Musukuma, Kalo; Kachuwaire, Obert; Rauch, Andri; Chi, Benjamin H.; Gorgievski, Meri; Zwahlen, Marcel; Wandeler, Gilles (2015). Hepatitis B viral load in dried blood spots: A validation study in Zambia. Journal of clinical virology, 72, pp. 20-24. Elsevier 10.1016/j.jcv.2015.08.019
Schmid, Patrick; Bregenzer, Andrea; Huber, Milo; Rauch, Andri; Jochum, Wolfram; Müllhaupt, Beat; Vernazza, Pietro; Opravil, Milos; Weber, Rainer (2015). Progression of Liver Fibrosis in HIV/HCV Co-Infection: A Comparison between Non-Invasive Assessment Methods and Liver Biopsy. PLoS ONE, 10(9), e0138838. Public Library of Science 10.1371/journal.pone.0138838
Béguelin, Charles Antoine; Vázquez, Miriam; Bertschi, Manuel; Yerly, S; de Jong, Denise; Gutbrod, Klemens; Rauch, Andri; Cusini, Alexia (2015). Viral Escape in the Central Nervous System with Multidrug-Resistant Human Immunodeficiency Virus-1. Open Forum Infectious Diseases, 3(1), ofv210. Oxford University Press 10.1093/ofid/ofv210
Neukam, Karin; Munteanu, Daniela; Haubitz, Sebastian; Mira, José A; Ingiliz, Patrick; Rivero-Juárez, Antonio; Lutz, Thomas; de Los Santos-Gil, Ignacio; Scholten, Stefan; Márquez, Manuel; Rauch, Andri; Rockstroh, Jürgen K.; Pineda, Juan A. (2014). Impact of IL28B genotype on first-week response to telaprevir-based therapy in HIV-HCV coinfection. Antiviral therapy, 20(4), pp. 407-413. International Medical Press 10.3851/IMP2921
Béguelin, Charles Antoine; Vázquez, Miriam; Bertschi, Manuel; Yerly, Sabine; de Jong, Denise; Rauch, Andri; Cusini, Alexia (2 November 2014). Viral escape in the CNS with multidrug-resistant HIV-1. Journal of the International AIDS Society, 17(Suppl 3), p. 19745. BioMed Central 10.7448/IAS.17.4.19745
Regoes, Roland R; McLaren, Paul J; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Günthard, Huldrych F; Hoffmann, Matthias; Rauch, Andri; Telenti, Amalio; Fellay, Jacques (2014). Disentangling human tolerance and resistance against HIV. PLoS biology, 12(9), e1001951. Public Library of Science 10.1371/journal.pbio.1001951
Fehr, Jan; Schärer, Verena; Hirzel, Cédric; Rauch, Andri (2014). Hepatitis B und C bei HIV-Koinfektion. Therapeutische Umschau, 71(8), pp. 490-496. Huber 10.1024/0040-5930/a000542
Guidi, Monia; Foletti, Giuseppe; McLaren, Paul; Cavassini, Matthias; Rauch, Andri; Tarr, Philip E; Lamy, Olivier; Panchaud, Alice; Telenti, Amalio; Csajka, Chantal; Rotger, Margalida (2014). Vitamin D time profile based on the contribution of non-genetic and genetic factors in HIV-infected individuals of European ancestry. Antiviral therapy, 20(3), pp. 261-269. International Medical Press 10.3851/IMP2823
Braun, DL; Rauch, Andri; Durisch, N; Eberhard, N; Anagnostopoulos, A; Ledergerber, B; Metzner, KJ; Böni, J; Weber, R; Fehr, J (2014). Efficacy of lead-in silibinin and subsequent triple therapy in difficult-to-treat HIV/hepatitis C virus-coinfected patients. HIV medicine, 15(10), pp. 625-630. Blackwell Science 10.1111/hiv.12166
Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076
Dalmau, Judith; Rotger, Margalida; Erkizia, Itziar; Rauch, Andri; Reche, Pedro; Pino, Maria; Esteve, Anna; Palou, Eduard; Brander, Christian; Paredes, Roger; Phung, Pham; Clotet, Bonaventura; Telenti, Amalio; Martinez-Picado, Javier; Prado, Julia G.; Study Group, CoRP (2014). Highly pathogenic adapted HIV-1 strains limit host immunity and dictate rapid disease progression. AIDS, 28(9), pp. 1261-1272. Lippincott Williams & Wilkins 10.1097/QAD.0000000000000293
Braun, Julia; Held, Leonhard; Ledergerber, Bruno; Egger, M; Furrer, H; Keiser, O; Rauch, Andri; Schöni-Affolter, F; Swiss HIV Cohort Study, (2014). Accounting for baseline differences and measurement error in the analysis of change over time. Statistics in medicine, 33(1), pp. 2-16. Wiley-Blackwell 10.1002/sim.5910
Podlekareva, Daria N; Panteleev, Alexander M; Grint, Daniel; Post, Frank A; Miro, Jose M; Bruyand, Mathias; Furrer, Hansjakob; Obel, Niels; Girardi, Enrico; Vasilenko, Anna; Losso, Marcelo H; Arenas-Pinto, Alejandro; Caylá, Joan; Rakhmanova, Aza; Zeltina, Indra; Werlinrud, Anne Marie; Lundgren, Jens D; Mocroft, Amanda; Kirk, Ole; Egger, M; ... (2014). Short- and long-term mortality and causes of death in HIV/tuberculosis patients in Europe. European respiratory journal, 43(1), pp. 166-77. European Respiratory Society 10.1183/09031936.00138712
Drescher, Sara M; von Wyl, Viktor; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Shah, Cyril; Aubert, Vincent; Klimkait, Thomas; Taffé, Patrick; Furrer, Hansjakob; Battegay, Manuel; Ambrosioni, Juan; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro L; Ledergerber, Bruno; Günthard, Huldrych F; Kouyos, Roger D; Egger, M; Keiser, O; ... (2014). Treatment-naive individuals are the major source of transmitted HIV-1 drug resistance in men who have sex with men in the Swiss HIV Cohort Study. Clinical infectious diseases, 58(2), pp. 285-94. Oxford University Press 10.1093/cid/cit694
Kouyos, Roger D; Rauch, Andri; Böni, Jürg; Yerly, Sabine; Shah, Cyril; Aubert, Vincent; Klimkait, Thomas; Kovari, Helen; Calmy, Alexandra; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Egger, Matthias; Furrer, Hansjakob; Keiser, Olivia; Schöni-Affolter, Franziska and Swiss HIV Cohort, Study (2014). Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV. International journal of epidemiology, 43(3), pp. 887-896. Oxford University Press 10.1093/ije/dyt276
Nitschke, Katja; Barriga, Alejandro; Schmidt, Julia; Timm, Jörg; Viazov, Sergei; Kuntzen, Thomas; Kim, Arthur Y.; Lauer, Georg M.; Allen, Todd M.; Gaudieri, Silvana; Rauch, Andri; Lange, Christian M.; Sarrazin, Christoph; Eiermann, Thomas; Sidney, John; Sette, Alessandro; Thimme, Robert; López, Daniel; Neumann-Haefelin, Christoph (2014). HLA-B⁎27 subtype specificity determines targeting and viral evolution of a hepatitis C virus-specific CD8+ T cell epitope. Journal of hepatology, 60(1), pp. 22-29. Elsevier 10.1016/j.jhep.2013.08.009
Abdel-Mohsen, Mohamed; Deng, Xutao; Liegler, Teri; Guatelli, John C.; Salama, Mohamed S.; Ghanem, Hussam El-din A; Rauch, Andri; Ledergerber, Bruno; Deeks, Steven G.; Günthard, Huldrych F.; Wong, Jospeh K.; Pillai, Satish K. (2014). Effects of Alpha Interferon Treatment on Intrinsic Anti-HIV-1 Immunity In Vivo. Journal of virology, 88(1), pp. 763-767. American Society for Microbiology 10.1128/JVI.02687-13
Kouyos, Roger D; Rauch, Andri; Braun, Dominique L; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Shah, Cyril; Kovari, Helen; Calmy, Alexandra; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F (2014). Higher Risk of Incident HCV-Coinfections in MSM with a Wide HIV Transmission Bottleneck. Journal of infectious diseases, 210(10), pp. 1555-1561. Oxford University Press 10.1093/infdis/jiu315
Abdel-Mohsen, Mohamed; Deng, Xutao; Danesh, Ali; Liegler, Teri; Jacobs, Evan S; Rauch, Andri; Ledergerber, Bruno; Norris, Philip J; Günthard, Huldrych F; Wong, Joseph K; Pillai, Satish K (2014). Role of MicroRNA Modulation in the Interferon-α/Ribavirin Suppression of HIV-1 In Vivo. PLoS ONE, 9(10), e109220. Public Library of Science 10.1371/journal.pone.0109220
Hasse, B.; Iff, M.; Ledergerber, B.; Calmy, A.; Schmid, P.; Hauser, Christoph; Cavassini, M.; Bernasconi, E.; Marzolini, C.; Tarr, P. E.; Swiss HIV, Cohort Study; Furrer, Hansjakob; Gorgievski, Meri; Rauch, Andri; Stähelin, Cornelia Johanna (2014). Obesity Trends and Body Mass Index Changes After Starting Antiretroviral Treatment: The Swiss HIV Cohort Study. Open Forum Infectious Diseases, 1(2), ofu040. Oxford University Press 10.1093/ofid/ofu040
Schnyder, Benno; Adam, Jacqueline; Rauch, Andri; Thurnheer, Maria C.; Pichler, Werner J. (2013). Letter to the editor: HLA-B*57:01(+) abacavir-naive individuals have specific T cells but no patch test reactivity. Journal of allergy and clinical immunology, 132(3), pp. 756-758. Mosby 10.1016/j.jaci.2013.04.013
Aouri, M.; Moradpour, D.; Cavassini, M.; Mercier, T.; Buclin, T.; Csajka, C.; Telenti, A.; Rauch, Andri; Decosterd, L. A. (2013). Multiplex Liquid Chromatography-Tandem Mass Spectrometry Assay for Simultaneous Therapeutic Drug Monitoring of Ribavirin, Boceprevir, and Telaprevir. Antimicrobial agents and chemotherapy, 57(7), pp. 3147-3158. American Society for Microbiology 10.1128/AAC.00281-13
Aouri, Manel; Calmy, Alexandra; Hirschel, Bernard; Telenti, Amalio; Buclin, Thierry; Cavassini, Matthias; Rauch, Andri; Decosterd, Laurent A. (2013). A validated assay by liquid chromatography-tandem mass spectrometry for the simultaneous quantification of elvitegravir and rilpivirine in HIV positive patients. Journal of mass spectrometry, 48(5), pp. 616-625. Wiley 10.1002/jms.3200
Wandeler, Gilles; Gsponer, Thomas; Bihl, Florian; Bernasconi, Enos; Cavassini, Matthias; Kovari, Helen; Schmid, Patrick; Battegay, Manuel; Calmy, Alexandra; Egger, Matthias; Furrer, Hansjakob; Rauch, Andri (2013). Hepatitis B virus infection is associated with impaired immunological recovery during antiretroviral therapy in the Swiss HIV cohort study. Journal of infectious diseases, 208(9), pp. 1454-1458. Cary, N.C.: Oxford University Press 10.1093/infdis/jit351
Bartha, I.; Carlson, J. M.; Brumme, C. J.; McLaren, P. J.; Brumme, Z. L.; John, M.; Haas, D. W.; Martinez-Picado, J.; Dalmau, J.; Lopez-Galindez, C.; Casado, C.; Rauch, Andri; Gunthard, H. F.; Bernasconi, E.; Vernazza, P.; Klimkait, T.; Yerly, S.; O'Brien, S. J.; Listgarten, J.; Pfeifer, N.; ... (2013). A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control. eLife, 2(e01123) eLife Sciences Publications 10.7554/eLife.01123
Rohrbach, Janine; Stickel, Felix; Schmid, Patrick; Thormann, Wolfgang; Kovari, Helen; Scherrer, Alexandra; Günthard, Huldrych F.; Vuichard, Danielle; Cavassini, Matthias; Ambrosioni, Juan; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri; Swiss HIV Cohort Study, The (2013). Changes in biomarkers of liver disease during successful combination antiretroviral therapy in HIV/HCV-coinfected individuals. Antiviral therapy, 19(2), pp. 149-159. International Medical Press 10.3851/IMP2686
Peters, Lars; Mocroft, Amanda; Soriano, Vincent; Rockstroh, Jürgen; Rauch, Andri; Karlsson, Anders; Knysz, Brygida; Pradier, Christian; Zilmer, Kai; Lundgren, Jens D.; Blackard, Jason (2013). Hyaluronic Acid Levels Predict Risk of Hepatic Encephalopathy and Liver-Related Death in HIV/Viral Hepatitis Coinfected Patients. PLoS ONE, 8(5), e64283. Public Library of Science 10.1371/journal.pone.0064283
Rotger, M.; Glass, T. R.; Junier, T.; Lundgren, J.; Neaton, J. D.; Poloni, E. S.; van 't Wout, A. B.; Lubomirov, R.; Colombo, S.; Martinez, R.; Rauch, Andri; Gunthard, H. F.; Neuhaus, J.; Wentworth, D.; van Manen, D.; Gras, L. A.; Schuitemaker, H.; Albini, L.; Torti, C.; Jacobson, L. P.; ... (2013). Contribution of Genetic Background, Traditional Risk Factors, and HIV-Related Factors to Coronary Artery Disease Events in HIV-Positive Persons. Clinical infectious diseases, 57(1), pp. 112-121. Oxford University Press 10.1093/cid/cit196
Mühlethaler, K; Bögli-Stuber, K; Wasmer, S; von Garnier, C; Dumont, P; Rauch, A; Mühlemann, K; Garzoni, C (2012). Quantitative PCR to diagnose Pneumocystis pneumonia in immunocompromised non-HIV patients. European respiratory journal, 39(4), pp. 971-8. Sheffield, UK: European Respiratory Society 10.1183/09031936.00095811
Wandeler, Gilles; Gsponer, Thomas; Bregenzer, Andrea; Günthard, Huldrych F; Clerc, Olivier; Calmy, Alexandra; Stöckle, Marcel; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri; Swiss HIV Cohort, Study (2012). Hepatitis C virus infections in the Swiss HIV Cohort Study: a rapidly evolving epidemic. Clinical infectious diseases, 55(10), pp. 1408-16. Cary, N.C.: Oxford University Press 10.1093/cid/cis694
Egli, Adrian; Schäfer, Juliane; Osthoff, Michael; Thiel, Steffen; Mikkelsen, Christina; Rauch, Andri; Hirsch, Hans H; Bucher, Heiner C; Young, James; Jensenius, Jens C; Battegay, Manuel; Trendelenburg, Marten; Swiss HIV Cohort Study, (2012). Low levels of mannan-binding lectin or ficolins are not associated with an increased risk of cytomegalovirus disease in HIV-infected patients. PLoS ONE, 8(1), e51983. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0051983
Cosgrove, Cormac; Ussher, James E; Rauch, Andri; Gärtner, Kathleen; Kurioka, Ayako; Hühn, Michael H; Adelmann, Krista; Kang, Yu-Hoi; Fergusson, Joannah R; Simmonds, Peter; Goulder, Philip; Hansen, Ted H; Fox, Julie; Günthard, Huldrych F; Khanna, Nina; Powrie, Fiona; Steel, Alan; Gazzard, Brian; Phillips, Rodney E; Frater, John; ... (2012). Early and nonreversible decrease of CD161++ /MAIT cells in HIV infection. Blood, 121(6), pp. 951-61. Washington, D.C.: American Society of Hematology 10.1182/blood-2012-06-436436
Gasser, O; Brander, C; Wolbers, M; Brown, N V; Rauch, A; Günthard, H F; Battegay, M; Hess, C; Swiss HIV Cohort Study, (2012). Expansion of interferon-γ-secreting HIV-specific T cells during successful antiretroviral therapy. HIV medicine, 14(4), pp. 241-6. Oxford: Blackwell Science 10.1111/j.1468-1293.2012.01040.x
Stern, M; Czaja, K; Rauch, A; Rickenbach, M; Günthard, H F; Battegay, M; Fellay, J; Hirschel, B; Hess, C; Swiss HIV Cohort Study Group, (2012). HLA-Bw4 identifies a population of HIV-infected patients with an increased capacity to control viral replication after structured treatment interruption. HIV medicine, 13(10), pp. 589-95. Oxford: Blackwell Science 10.1111/j.1468-1293.2012.01019.x
Simmons, Ruth; Sharp, Colin; McClure, C Patrick; Rohrbach, Janine; Kovari, Helen; Frangou, Eleni; Simmonds, Peter; Irving, Will; Rauch, Andri; Bowness, Paul; Klenerman, Paul; Swiss HIV, Cohort Study (2012). Parvovirus 4 infection and clinical outcome in high-risk populations. Journal of infectious diseases, 205(12), pp. 1816-20. Cary, N.C.: Oxford University Press 10.1093/infdis/jis291
Pillai, Satish K; Abdel-Mohsen, Mohamed; Guatelli, John; Skasko, Mark; Monto, Alexander; Fujimoto, Katsuya; Yukl, Steven; Greene, Warner C; Kovari, Helen; Rauch, Andri; Fellay, Jacques; Battegay, Manuel; Hirschel, Bernard; Witteck, Andrea; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Wong, Joseph K; Swiss HIV Cohort Study, (2012). Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 109(8), pp. 3035-40. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.1111573109
Gaudieri, Silvana; Lucas, Michaela; Lucas, Andrew; McKinnon, Elizabeth; Albloushi, Hiba; Rauch, Andri; di Iulio, Julia; Martino, David; Prescott, Susan L; Tulic, Meri K (2012). Genetic variations in IL28B and allergic disease in children. PLoS ONE, 7(1), e30607. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0030607
Sambatakou, H; Dabis, F; Geffard, S; Smit, C; de Wolf, F; van der Meer, J; Peters, L; Puoti, M; Monforte, AD; Tural, C; Zinkernagel, A; Ledergerber, B; Rauch, A; de Witt, S; Suarez-Lozano, N (2012). Effect of hepatitis C treatment on CD4+ T-cell counts and the risk of death in HIV-HCV-coinfected patients: the COHERE collaboration. Antiviral therapy, 17(8), pp. 1541-50. London: International Medical Press
Wandeler, Gilles; Furrer, Hansjakob; Rauch, Andri (2011). Sustained virological response to a raltegravir-containing salvage therapy in an HIV-2-infected patient. AIDS, 25(18), pp. 2306-2308. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32834cdb89
di Iulio, Julia; Ciuffi, Angela; Fitzmaurice, Karen; Kelleher, Dermot; Rotger, Margalida; Fellay, Jacques; Martinez, Raquel; Pulit, Sara; Furrer, Hansjakob; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard; Barnes, Eleanor; Klenerman, Paul; Telenti, Amalio; Rauch, Andri; Swiss HIV Cohort Study, (2011). Estimating the net contribution of interleukin-28B variation to spontaneous hepatitis C virus clearance. Hepatology, 53(5), pp. 1446-54. Hoboken, N.J.: Wiley Interscience 10.1002/hep.24263
Wyl, Viktor von; Gianella, Sara; Fischer, Marek; Niederoest, Barbara; Kuster, Herbert; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Rauch, Andri; Hirschel, Bernard; Vernazza, Pietro; Weber, Rainer; Joos, Beda; Günthard, Huldrych F; Swiss HIV Cohort Study-SHCS, (2011). Early antiretroviral therapy during primary HIV-1 infection results in a transient reduction of the viral setpoint upon treatment interruption. PLoS ONE, 6(11), e27463. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0027463
Scherrer, Alexandra U; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Bürgisser, Philippe; Rauch, Andri; Hirschel, Bernard; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Held, Leonhard; Günthard, Huldrych F; Swiss HIV Cohort, Study (2011). Improved virological outcome in White patients infected with HIV-1 non-B subtypes compared to subtype B. Clinical infectious diseases, 53(11), pp. 1143-52. Cary, N.C.: Oxford University Press 10.1093/cid/cir669
Boillat Blanco, Noémie; Probst, Arnold; Da Costa, Vreneli Waelti; Giulieri, Stefano; Bernasconi, Enos; Calmy, Alexandra; Elzi, Luigia; Rauch, Andri; Weber, Rainer; Bertisch, Barbara; Cavassini, Matthias; Bochud, Pierre-Yves (2011). Impact of a nurse vaccination program on hepatitis B immunity in a Swiss HIV clinic. Journal of acquired immune deficiency syndromes JAIDS, 58(5), pp. 472-4. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318237915e
Gianella, Sara; von Wyl, Viktor; Fischer, Marek; Niederoest, Barbara; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Rauch, Andri; Hirschel, Bernard; Vernazza, Pietro; Weber, Rainer; Joos, Beda; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). Effect of early antiretroviral therapy during primary HIV-1 infection on cell-associated HIV-1 DNA and plasma HIV-1 RNA. Antiviral therapy, 16(4), pp. 535-45. London: International Medical Press 10.3851/IMP1776
Nguyen, Alain; Calmy, Alexandra; Delhumeau, Cecile; Mercier, Isabelle; Cavassini, Matthias; Mello, Aurelie F; Elzi, Luigia; Rauch, Andri; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard (2011). A randomized cross-over study to compare raltegravir and efavirenz (SWITCH-ER study). AIDS, 25(12), pp. 1481-7. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e328348dab0
Rotger, Margalida; Dalmau, Judith; Rauch, Andri; McLaren, Paul; Bosinger, Steven E; Martinez, Raquel; Sandler, Netanya G; Roque, Annelys; Liebner, Julia; Battegay, Manuel; Bernasconi, Enos; Descombes, Patrick; Erkizia, Itziar; Fellay, Jacques; Hirschel, Bernard; Miró, Jose M; Palou, Eduard; Hoffmann, Matthias; Massanella, Marta; Blanco, Julià; ... (2011). Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque. Journal of clinical investigation, 121(6), pp. 2391-400. Ann Arbor, Mich.: American Society for Clinical Investigation 10.1172/JCI45235
Rauch, Andri; Fellay, Jacques (2011). Personalized hepatitis C therapy: opportunities and pitfalls. Expert review of molecular diagnostics, 11(2), pp. 127-9. London: Expert Reviews 10.1586/ERM.10.116
Pfafferott, Katja; Gaudieri, Silvana; Ulsenheimer, Axel; James, Ian; Heeg, Malte; Nolan, David; John, Mina; Rauch, Andri; Mallal, Simon; Lucas, Andrew; Klenerman, Paul; Diepolder, Helmut M; Lucas, Michaela (2011). Constrained pattern of viral evolution in acute and early HCV infection limits viral plasticity. PLoS ONE, 6(2), e16797. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0016797
Merani, Shahzma; Petrovic, Danijela; James, Ian; Chopra, Abha; Cooper, Don; Freitas, Elizabeth; Rauch, Andri; di Iulio, Julia; John, Mina; Lucas, Michaela; Fitzmaurice, Karen; McKiernan, Susan; Norris, Suzanne; Kelleher, Dermot; Klenerman, Paul; Gaudieri, Silvana (2011). Effect of immune pressure on hepatitis C virus evolution: insights from a single-source outbreak. Hepatology, 53(2), pp. 396-405. Hoboken, N.J.: Wiley Interscience 10.1002/hep.24076
Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Rieder, Philip; Joos, Beda; Taffé, Patrick; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Rauch, Andri; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F; ... (2011). Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clinical infectious diseases, 52(4), pp. 532-9. Cary, N.C.: Oxford University Press 10.1093/cid/ciq164
Nguyen, Alain; Calmy, Alexandra; Delhumeau, Cécile; Mercier, Isabelle K; Cavassini, Matthias; Fayet-Mello, Aurélie; Elzi, Luigia; Genné, Daniel; Rauch, Andri; Bernasconi, Enos; Hirschel, Bernard; Swiss HIV Cohort Study, (2011). A randomized crossover study to compare efavirenz and etravirine treatment. AIDS, 25(1), pp. 57-63. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833f9f63
Rauch, A; European AIDS Treatment Network (NEAT) Acute Hepatitis C Infecti, (2011). Acute hepatitis C in HIV-infected individuals: recommendations from the European AIDS Treatment Network (NEAT) consensus conference. AIDS, 25(4), pp. 399-409. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e328343443b
Rohrbach, Janine; Robinson, Nicola; Harcourt, Gillian; Hammond, Emma; Gaudieri, Silvana; Gorgievski, Meri; Telenti, Amalio; Keiser, Olivia; Günthard, Huldrych F; Hirschel, Bernhard; Hoffmann, Matthias; Bernasconi, Enos; Battegay, Manuel; Furrer, Hansjakob; Klenerman, Paul; Rauch, Andri (2010). Cellular immune responses to HCV core increase and HCV RNA levels decrease during successful antiretroviral therapy. Gut, 59(9), pp. 1252-1258. London: BMJ Publishing Group 10.1136/gut.2009.205971
Alizon, Samuel; von Wyl, Viktor; Stadler, Tanja; Kouyos, Roger D; Yerly, Sabine; Hirschel, Bernard; Böni, Jürg; Shah, Cyril; Klimkait, Thomas; Furrer, Hansjakob; Rauch, Andri; Vernazza, Pietro L; Bernasconi, Enos; Battegay, Manuel; Bürgisser, Philippe; Telenti, Amalio; Günthard, Huldrych F; Bonhoeffer, Sebastian; Swiss HIV Cohort Study, (2010). Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS pathogens, 6(9), e1001123. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1001123
Rauch, Andri; Kutalik, Zoltán; Descombes, Patrick; Cai, Tao; Di Iulio, Julia; Mueller, Tobias; Bochud, Murielle; Battegay, Manuel; Bernasconi, Enos; Borovicka, Jan; Colombo, Sara; Cerny, Andreas; Dufour, Jean-François; Furrer, Hansjakob; Günthard, Huldrych F; Heim, Markus; Hirschel, Bernard; Malinverni, Raffaele; Moradpour, Darius; Müllhaupt, Beat; ... (2010). Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study. Gastroenterology, 138(4), 1338-45, 1345.e1-7. Philadelphia, Pa.: Elsevier 10.1053/j.gastro.2009.12.056
Rauch, Andri; Rohrbach, Janine; Bochud, Pierre-Yves (2010). The recent breakthroughs in the understanding of host genomics in hepatitis C. European journal of clinical investigation EJCI, 40(10), pp. 950-9. Oxford: Wiley-Blackwell 10.1111/j.1365-2362.2010.02337.x
Casado, Concepción; Colombo, Sara; Rauch, Andri; Martínez, Raquel; Günthard, Huldrych F; Garcia, Soledad; Rodríguez, Carmen; Del Romero, Jorge; Telenti, Amalio; López-Galíndez, Cecilio (2010). Host and viral genetic correlates of clinical definitions of HIV-1 disease progression. PLoS ONE, 5(6), e11079. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0011079
Kovari, Helen; Ledergerber, Bruno; Battegay, Manuel; Rauch, Andri; Hirschel, Bernard; Foguena, Alain Kenfak; Vernazza, Pietro; Bernasconi, Enos; Mueller, Nicolas J; Weber, Rainer (2010). Incidence and risk factors for chronic elevation of alanine aminotransferase levels in HIV-infected persons without hepatitis b or c virus co-infection. Clinical infectious diseases, 50(4), pp. 502-11. Cary, N.C.: The University of Chicago Press 10.1086/649922
Ferry, Tristan; Hirschel, Bernard; Dang, Thanh; Meylan, Pascal; Delhumeau, Cécile; Rauch, Andri; Weber, Rainer; Elzi, Luigia; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Swiss HIV Cohort, Study (2010). Infrequent replication of parvovirus B19 and erythrovirus genotypes 2 and 3 among HIV-infected patients with chronic anemia. Clinical infectious diseases, 50(1), pp. 115-8. Cary, N.C.: The University of Chicago Press 10.1086/649004
May, Margaret; Wood, Robin; Myer, Landon; Taffé, Patrick; Rauch, Andri; Battegay, Manuel; Egger, Matthias (2009). CD4(+) T cell count decreases by ethnicity among untreated patients with HIV infection in South Africa and Switzerland. Journal of infectious diseases, 200(11), pp. 1729-35. Cary, N.C.: The University of Chicago Press 10.1086/648096
Tschochner, Monika; Chopra, Abha; Maiden, Tanya M; Ahmad, Imran F; James, Ian; Furrer, Hansjakob; Günthard, Huldrych F; Mallal, Simon; Rauch, Andri; John, Mina (2009). Effects of HIV type-1 immune selection on susceptability to integrase inhibitor resistance. Antiviral therapy, 14(7), pp. 953-64. London: International Medical Press 10.3851/IMP1419
Rauch, Andri; James, Ian; Pfafferott, Katja; Nolan, David; Klenerman, Paul; Cheng, Wendy; Mollison, Lindsay; McCaughan, Geoff; Shackel, Nick; Jeffrey, Gary P; Baker, Ross; Freitas, Elizabeth; Humphreys, Isla; Furrer, Hansjakob; Günthard, Huldrych F; Hirschel, Bernard; Mallal, Simon; John, Mina; Lucas, Michaela; Barnes, Eleanor; ... (2009). Divergent adaptation of hepatitis C virus genotypes 1 and 3 to human leukocyte antigen-restricted immune pressure. Hepatology, 50(4), pp. 1017-29. Hoboken, N.J.: Wiley Interscience 10.1002/hep.23101
Combescure, Christophe; Vallier, N; Ledergerber, B; Cavassini, M; Furrer, H; Rauch, A; Battegay, M; Bernasconi, E; Vernazza, P; Hirschel, B (2009). How reliable is an undetectable viral load? HIV medicine, 10(8), pp. 470-6. Oxford: Blackwell Science 10.1111/j.1468-1293.2009.00714.x
Gaudieri, Silvana; Rauch, Andri; Pfafferott, Katja; Barnes, Eleanor; Cheng, Wendy; McCaughan, Geoff; Shackel, Nick; Jeffrey, Gary P; Mollison, Lindsay; Baker, Ross; Furrer, Hansjakob; Günthard, Huldrych F; Freitas, Elizabeth; Humphreys, Isla; Klenerman, Paul; Mallal, Simon; James, Ian; Roberts, Stuart; Nolan, David and Lucas, Michaela (2009). Hepatitis C virus drug resistance and immune-driven adaptations: relevance to new antiviral therapy. Hepatology, 49(4), pp. 1069-82. Hoboken, N.J.: Wiley Interscience 10.1002/hep.22773
Kesselring, Anouk M; Wit, Ferdinand W; Sabin, Caroline A; Lundgren, Jens D; Gill, M John; Gatell, Jose M; Rauch, Andri; Montaner, Julio S; de Wolf, Frank; Reiss, Peter; Mocroft, Amanda (2009). Risk factors for treatment-limiting toxicities in patients starting nevirapine-containing antiretroviral therapy. AIDS, 23(13), pp. 1689-99. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32832d3b54
Rauch, Andri; Gaudieri, Silvana; Thio, Chloe; Bochud, Pierre-Yves (2009). Host genetic determinants of spontaneous hepatitis C clearance. Pharmacogenomics, 10(11), pp. 1819-37. London: Future Medicine 10.2217/PGS.09.121
Fux, Christoph A; Rauch, Andri; Simcock, Mathew; Bucher, Heiner C; Hirschel, Bernard; Opravil, Milos; Vernazza, Pietro; Cavassini, Matthias; Bernasconi, Enos; Elzi, Luigia; Furrer, Hansjakob (2008). Tenofovir use is associated with an increase in serum alkaline phosphatase in the Swiss HIV Cohort Study. Antiviral therapy, 13(8), pp. 1077-82. London: International Medical Press
Rauch, Andri; Nolan, David; Thurnheer, Christine; Fux, Christoph A; Cavassini, Matthias; Chave, Jean-Philippe; Opravil, Milos; Phillips, Elizabeth; Mallal, Simon; Furrer, Hansjakob (2008). Refining abacavir hypersensitivity diagnoses using a structured clinical assessment and genetic testing in the Swiss HIV Cohort Study. Antiviral therapy, 13(8), pp. 1019-28. London: International Medical Press
Colombo, Sara; Rauch, Andri; Rotger, Margalida; Fellay, Jacques; Martinez, Raquel; Fux, Christoph; Thurnheer, Christine; Günthard, Huldrych F; Goldstein, David B; Furrer, Hansjakob; Telenti, Amalio (2008). The HCP5 single-nucleotide polymorphism: a simple screening tool for prediction of hypersensitivity reaction to abacavir. Journal of infectious diseases, 198(6), pp. 864-7. Cary, N.C.: The University of Chicago Press 10.1086/591184
Rauch, Andri; Gaudieri, Silvana; Evison, John; Nolan, David; Cavassini, Matthias; Weber, Rainer; James, Ian; Furrer, Hansjakob (2008). Low current and nadir CD4+ T-cell counts are associated with higher hepatitis C virus RNA levels in the Swiss HIV cohort study. Antiviral therapy, 13(3), pp. 455-60. London: International Medical Press
Rauch, Andri; Nolan, David; Furrer, Hansjakob; McKinnon, Elizabeth; John, Mina; Mallal, Simon; Gaudieri, Silvana; Günthard, Huldrych F; Schmid, Patrick; Battegay, Manuel; Hirschel, Bernard; Telenti, Amalio; James, Ian (2008). HLA-Bw4 homozygosity is associated with an impaired CD4 T cell recovery after initiation of antiretroviral therapy. Clinical infectious diseases, 46(12), pp. 1921-5. Cary, N.C.: The University of Chicago Press 10.1086/588479
Clifford, Gary M; Rickenbach, Martin; Polesel, Jerry; Dal Maso, Luigino; Steffen, Ingrid; Ledergerber, Bruno; Rauch, Andri; Probst-Hensch, Nicole M; Bouchardy, Christine; Levi, Fabio; Franceschi, Silvia (2008). Influence of HIV-related immunodeficiency on the risk of hepatocellular carcinoma. AIDS, 22(16), pp. 2135-41. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32831103ad
Rauch, A; Laird, R; McKinnon, E; Telenti, A; Furrer, H; Weber, R; Smillie, D; Gaudieri, S; the, Swiss HIV Cohort Study (2007). Influence of inhibitory killer immunoglobulin-like receptors and their HLA-C ligands on resolving hepatitis C virus infection. Tissue antigens, 69 Suppl 1, pp. 237-240. Oxford: Wiley-Blackwell 10.1111/j.1399-0039.2006.773_4.x
Lucas, Michaela; Ulsenheimer, Axel; Pfafferot, Katja; Heeg, Malte H J; Gaudieri, Silvana; Grüner, Norbert; Rauch, Andri; Gerlach, J Tilman; Jung, Maria-Christina; Zachoval, Reinhart; Pape, Gerd R; Schraut, Winfried; Santantonio, Teresa; Nitschko, Hans; Obermeier, Martin; Phillips, Rodney; Scriba, Thomas J; Semmo, Nasser; Day, Cheryl; Weber, Jonathan N; ... (2007). Tracking virus-specific CD4+ T cells during and after acute hepatitis C virus infection. PLoS ONE, 2(7), e649. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0000649
Gaudieri, Silvana; Rauch, Andri; Park, Lawrence P; Freitas, Elizabeth; Herrmann, Susan; Jeffrey, Gary; Cheng, Wendy; Pfafferott, Katja; Naidoo, Kiloshni; Chapman, Russell; Battegay, Manuel; Weber, Rainer; Telenti, Amalio; Furrer, Hansjakob; James, Ian; Lucas, Michaela; Mallal, Simon A (2006). Evidence of viral adaptation to HLA class I-restricted immune pressure in chronic hepatitis C virus infection. Journal of virology, 80(22), pp. 11094-104. Baltimore: American Society for Microbiology 10.1128/JVI.00912-06
Martin, Annalise; Nolan, David; Almeida, Coral-Ann; Rauch, Andri; Mallal, Simon (2006). Predicting and diagnosing abacavir and nevirapine drug hypersensitivity: from bedside to bench and back again. Pharmacogenomics, 7(1), pp. 15-23. London: Future Medicine 10.2217/14622416.7.1.15
Rauch, A; Nolan, D; Martin, A; McKinnon, E; Almeida, C; Mallal, Simon (2006). Prospective genetic screening decreases the incidence of abacavir hypersensitivity reactions in the Western Australian HIV cohort study. Clinical infectious diseases, 43(1), pp. 99-102. Cary, N.C.: The University of Chicago Press 10.1086/504874
