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Pouyet, Fanny; Aeschbacher, Simon; Thiéry, Alexandre Benoit Xavier; Excoffier, Laurent (2018). Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences. eLife, 7, pp. 1-21. eLife Sciences Publications 10.7554/eLife.36317
Aeschbacher, Simon; Selby, Jessica P.; Willis, John H.; Coop, Graham (2017). Population-genomic inference of the strength and timing of selection against gene flow. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 114(27), pp. 7061-7066. National Academy of Sciences NAS 10.1073/pnas.1616755114
Alves, Isabel; Arenas Busto, Miguel; Currat, Mathias; Sramkova Hanulova, Anna; Martins Conde e Sousa, Vitor; Ray, Nicolas; Excoffier, Laurent (2016). Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution, 33(4), pp. 946-958. Oxford University Press 10.1093/molbev/msv332
Alves, Isabel; Srámková Hanulová, A.; Foll, Matthieu; Excoffier, Laurent (2012). Genomic Data Reveal a Complex Making of Humans. PLoS genetics, 8(7), e1002837. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1002837
Giger, Thomas; Excoffier, Laurent; Amstutz, Ursula; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Kelso, Janet; Largiadèr, Carlo R (2008). Population transcriptomics of life-history variation in the genus Salmo. Molecular Ecology, 17(13), pp. 3095-3108. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03820.x
Giger, Thomas; Amstutz, Ursula; Excoffier, Laurent; Champigneulle, Alexis; Day, Philip; Powell, Richard; Largiadèr, Carlo (2007). The genetic basis of smoltification: Functional genomics tools facilitate the search for the needle in the haystack. In: Harris, Graeme; Millner, Nigel (eds.) Sea Trout: Biology Conservation and Management (pp. 183-195). Chichester: John Wiley & Sons 10.1002/9780470996027.ch13
Alves, Isabel; Arenas Busto, Miguel; Currat, Mathias; Sramkova Hanulova, Anna; Martins Conde e Sousa, Vitor; Ray, Nicolas; Excoffier, Laurent (2016). Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution, 33(4), pp. 946-958. Oxford University Press 10.1093/molbev/msv332
Mona, Stefano; Ray, Nicolas; Arenas Busto, Miguel; Excoffier, Laurent (2014). Genetic consequences of habitat fragmentation during a range expansion. Heredity, 112(3), pp. 291-299. Oliver and Boyd 10.1038/hdy.2013.105
Arenas Busto, Miguel; Mona, Stefano; Trochet, Audrey; Sramkova Hanulova, Anna; Currat, Mathias; Ray, Nicolas; Chikhi, Lounes; Rasteiro, Rita; Schmeller, Dirk S.; Excoffier, Laurent (2014). The scaling of genetic diversity in a changing and fragmented world. In: Henle, Klaus; Potts, Simon; Kunin, William; Matsinos, Yiannis; Simila, Jukka; Pantis, John; Grobelnik, Vesna; Penev, Lyubomir; Settele, Josef (eds.) Scaling in Ecology and Biodiversity Conservation. Advanced Books (pp. 55-60). Sofia, Bulgaria: Pensoft Publishers
Arenas, Miguel; François, Olivier; Currat, Mathias; Ray, Nicolas; Excoffier, Laurent (2013). Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients. Molecular Biology and Evolution, 30(1), pp. 57-61. Oxford University Press 10.1093/molbev/mss203
Arenas, M.; Ray, N.; Currat, M.; Excoffier, L. (2012). Consequences of Range Contractions and Range Shifts on Molecular Diversity. Molecular Biology and Evolution, 29(1), pp. 207-218. Oxford: Oxford University Press 10.1093/molbev/msr187
Schmid, Sarah; Neuenschwander, Samuel; Pitteloud, Camille; Heckel, Gerald; Pajkovic, Mila; Arlettaz, Raphaël; Alvarez, Nadir (2018). Spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus revealed by museum genomics. Ecology and evolution, 8(3), pp. 1480-1495. John Wiley & Sons, Inc. 10.1002/ece3.3699
Resano Mayor, Jaime; Fernández-Martín, Àngel; Hernández-Gómez, Sergio; Toranzo, Ignasi; España, Antonio; Gil, Juan Antonio; de Gabriel, Miguel; Roa-Álvarez, Isabel; Strinella, Eliseo; Hobson, Keith A.; Heckel, Gerald; Arlettaz, Raphaël (2017). Integrating genetic and stable isotope analyses to infer the population structure of the White-winged Snowfinch Montifringilla nivalis in Western Europe. Journal of ornithology, 158(2), pp. 395-405. Springer 10.1007/s10336-016-1413-8
Kindler, E.; Arlettaz, R.; Heckel, G. (2012). Deep phylogeographic divergence and cytonuclear discordance in the grasshopper Oedaleus decorus. Molecular phylogenetics and evolution, 65(2), pp. 695-704. San Diego, Calif.: Elsevier 10.1016/j.ympev.2012.07.025
Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076
Balloux, François (2001). EASYPOP (Version 1.7): A Computer Program for Population Genetics Simulations. Journal of heredity, 92(3), pp. 301-302. Oxford University Press 10.1093/jhered/92.3.301
Li, Juan; Amado, André; Bank, Claudia (2024). Rapid adaptation of recombining populations on tunable fitness landscapes. Molecular ecology, 33(10), e16900. Wiley 10.1111/mec.16900
Blanckaert, Alexandre; Sriram, Vedanth; Bank, Claudia (2023). In search of the Goldilocks zone for hybrid speciation II: hard times for hybrid speciation? Evolution, 77(10), pp. 2162-2172. Wiley 10.1093/evolut/qpad125
Marrec, Loïc; Bank, Claudia; Bertrand, Thibault (2023). Solving the stochastic dynamics of population growth. Ecology and evolution, 13(8), pp. 1-20. John Wiley & Sons, Inc. 10.1002/ece3.10295
Amado, André; Li, Juan; Bank, Claudia (2023). STUN: forward-time simulation on TUnable fitNess landscapes in recombining populations. Bioinformatics advances, 3(1), vbad164. Oxford University Press 10.1093/bioadv/vbad164
Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644
Beysard, Mathias; Krebs-Wheaton, Rebecca; Heckel, Gerald (2015). Tracing reinforcement through asymmetrical partner preference in the European common vole Microtus arvalis. BMC evolutionary biology, 15(1) BioMed Central 10.1186/s12862-015-0455-5
Beysard, Mathias; Heckel, Gerald (2014). Structure and dynamics of hybrid zones at different stages of speciation in the common vole (Microtus arvalis). Molecular Ecology, 23(3), pp. 673-687. Wiley-Blackwell 10.1111/mec.12613
Beysard, Mathias (2014). Speciation and hybridization in the common vole (Microtus arvalis). (Dissertation, Institute of Ecology and Evolution, Faculty of Science)
Sutter, A.; Beysard, M.; Heckel, G. (2013). Sex-specific clines support incipient speciation in a common European mammal. Heredity, 110(4), pp. 398-404. Oliver and Boyd 10.1038/hdy.2012.124
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2020). Dissection of the mutation accumulation process during bacterial range expansions. BMC Genomics, 21(1) BioMed Central 10.1186/s12864-020-6676-z
Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2019). Mutational and Selective Processes Involved in Evolution during Bacterial Range Expansions. Molecular Biology and Evolution, 36(10), pp. 2313-2327. Oxford University Press 10.1093/molbev/msz148
Bosshard, Lars; Dupanloup, Isabelle; Tenaillon, Olivier; Bruggmann, Rémy; Ackermann, Martin; Peischl, Stephan; Excoffier, Laurent (2017). Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics, 207(2), pp. 669-684. Genetics Society of America 10.1534/genetics.117.300144
Braaker, Sonja; Heckel, Gerald (2009). Transalpine colonisation and partial phylogeographic erosion by dispersal in the common vole Microtus arvalis. Molecular Ecology, 18(11), pp. 2518-2531. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2009.04189.x
Meier, Joana; McGee, Matthew D; Marques, David A; Mwaiko, Salome; Kishe, Mary; Wandera, Sylvester; Neumann, Dirk; Mrosso, Hilary; Chapman, Lauren J; Chapman, Colin A; Kaufman, Les; Taabu-Munyaho, Anthony; Wagner, Catherine E; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2023). Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science, 381(6665), eade2833. American Association for the Advancement of Science 10.1126/science.ade2833
Mc Gee, Matthew D.; Borstein, Samuel R.; Meier, Joana I.; Marques, David A.; Mwaiko, Salome; Taabu, Anthony; Kishe, Mary A.; O’Meara, Brian; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2020). The ecological and genomic basis of explosive adaptive radiation. Nature, 586(7827), pp. 75-79. Springer Nature 10.1038/s41586-020-2652-7
Bosshard, Lars; Dupanloup, Isabelle; Tenaillon, Olivier; Bruggmann, Rémy; Ackermann, Martin; Peischl, Stephan; Excoffier, Laurent (2017). Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics, 207(2), pp. 669-684. Genetics Society of America 10.1534/genetics.117.300144
Arenas, Miguel; François, Olivier; Currat, Mathias; Ray, Nicolas; Excoffier, Laurent (2013). Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients. Molecular Biology and Evolution, 30(1), pp. 57-61. Oxford University Press 10.1093/molbev/mss203
Daub, Joséphine; Hofer, Tamara; Cutivet, Emilie; Duperret, Isabelle; Quintana-Murci, L; Robinson-Rechavi, M; Excoffier, Laurent (2013). Evidence for Polygenic Adaptation to Pathogens in the Human Genome. Molecular Biology and Evolution, 30(7), pp. 1544-1558. Oxford University Press 10.1093/molbev/mst080
Oliveira, Sandra; Marchi, Nina; Excoffier, Laurent (2024). Assessing the limits of local ancestry inference from small reference panels. Molecular ecology resources, 24(6), e13981. Wiley 10.1111/1755-0998.13981
Oliveira, Sandra; Fehn, Anne-Maria; Amorim, Beatriz; Stoneking, Mark; Rocha, Jorge (2023). Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry. Science Advances, 9(38), eadh3822. American Association for the Advancement of Science 10.1126/sciadv.adh3822
Stoneking, Mark; Arias, Leonardo; Liu, Dang; Oliveira, Sandra; Pugach, Irina; Rodriguez, Jae Joseph Russell B (2023). Genomic perspectives on human dispersals during the Holocene. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 120(4), e2209475119. National Academy of Sciences NAS 10.1073/pnas.2209475119
Daub, Joséphine; Moretti, S.; Davydov, I.I.; Excoffier, Laurent; Robinson-Rechavi, M. (2017). Detection of Pathways Affected by Positive Selection in Primate Lineages Ancestral to Humans. Molecular Biology and Evolution, 34(6), pp. 1391-1402. Oxford University Press 10.1093/molbev/msx083
Amorim, Carlos Eduardo G.; Daub, Joséphine; Salzano, Francisco M.; Foll, Matthieu; Excoffier, Laurent (2015). Detection of convergent genome-wide signals of adaptation to tropical forests in humans. PLoS ONE, 10(4), pp. 1-19. Public Library of Science 10.1371/journal.pone.0121557
Daub, Joséphine; Duperret, Isabelle; Robinson-Rechavi, Marc; Excoffier, Laurent (2015). Inference of evolutionary forces acting on human biological pathways. Genome biology and evolution, 7(6), pp. 1546-1558. Oxford University Press 10.1093/gbe/evv083
Foll, Matthieu; Gaggiotti, Oscar; Daub, Joséphine; Vatsiou, Alexandra; Excoffier, Laurent (2014). Widespread Signals of Convergent Adaptation to High Altitude in Asia and America. American journal of human genetics, 95(4), pp. 394-407. Cell Press 10.1016/j.ajhg.2014.09.002
Daub, Joséphine; Hofer, Tamara; Cutivet, Emilie; Duperret, Isabelle; Quintana-Murci, L; Robinson-Rechavi, M; Excoffier, Laurent (2013). Evidence for Polygenic Adaptation to Pathogens in the Human Genome. Molecular Biology and Evolution, 30(7), pp. 1544-1558. Oxford University Press 10.1093/molbev/mst080
Sikora, Martin; Seguin-Orlando, Andaine; Martins Conde e Sousa, Vitor; Albrechtsen, Anders; Korneliussen, Thorfinn; Ko, Amy; Rasmussen, Simon; Dupanloup, Isabelle; Nigst, Philip R.; Bosch, Marjolein D.; Renaud, Gabriel; Allentoft, Morten E.; Margaryan, Ashot; Vasilyev, Sergey V.; Veselovskaya, Elizaveta V.; Borutskaya, Svetlana B.; Deviese, Thibaut; Comeskey, Dan; Higham, Tom; Manica, Andrea; ... (2017). Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers. Science, 358(6363), pp. 659-662. American Association for the Advancement of Science 10.1126/science.aao1807
Bosshard, Lars; Dupanloup, Isabelle; Tenaillon, Olivier; Bruggmann, Rémy; Ackermann, Martin; Peischl, Stephan; Excoffier, Laurent (2017). Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics, 207(2), pp. 669-684. Genetics Society of America 10.1534/genetics.117.300144
de Manuel, Marc; Kuhlwilm, Martin; Frandsen, Peter; Martins Conde e Sousa, Vitor; Desai, Tariq; Prado-Martinez, Javier; Hernandez-Rodriguez, Jessica; Duperret, Isabelle; Lao, Oscar; Hallast, Pille; Schmidt, Joshua M.; Herdia-Genestar, José María; Benazzo, Andrea; Barbujani, Guido; Peter, Benjamin M.; Kuderna, Lukas F. K.; Casals, Ferran; Angedakin, Samuel; Arandjelovic, Mimi; Boesch, Christophe; ... (2016). Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science, 354(6311), pp. 477-481. American Association for the Advancement of Science 10.1126/science.aag2602
Henn, Brenna M.; Botigué, Laura R.; Peischl, Stephan; Duperret, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Musharoff, Shaila; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2016). Distance from Sub-Saharan Africa Predicts Mutational Load in Diverse Human Genomes. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 113(4), E440-E449. National Academy of Sciences NAS 10.1073/pnas.1510805112
Botigué, Laura R.; Henn, Brenna M.; Peischl, Stephan; Dupanloup, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Yee, M.C.; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2015). The Out of Africa expansion affected accumulation of deleterious alleles in human genomes. American Journal of Physical Anthropology, 156(S60), pp. 90-91. Wiley
Daub, Joséphine; Duperret, Isabelle; Robinson-Rechavi, Marc; Excoffier, Laurent (2015). Inference of evolutionary forces acting on human biological pathways. Genome biology and evolution, 7(6), pp. 1546-1558. Oxford University Press 10.1093/gbe/evv083
Schubert, Mikkel; Jónsson, Hákon; Chang, Dan; Der Sarkissian, Clio; Ermini, Luca; Ginolhac, Aurélien; Albrechtsen, Anders; Dupanloup, Isabelle; Foucal, Adrien; Petersen, Bent; Fumagalli, Matteo; Raghavan, Maanasa; Seguin-Orlando, Andaine; Korneliussen, Thorfinn S.; Velazquez, Amhed M. V.; Stenderup, Jesper; Hoover, Cindi A.; Rubin, Carl-Johan; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; ... (2014). Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(52), E5661-E5669. National Academy of Sciences NAS 10.1073/pnas.1416991111
Excoffier, Laurent; Dupanloup, Isabelle; Huerta-Sánchez, Emilia; Sousa, Vitor C.; Foll, Matthieu (2013). Robust demographic inference from genomic and SNP data. PLoS genetics, 9(10), e1003905. Public Library of Science 10.1371/journal.pgen.1003905
Daub, Joséphine; Hofer, Tamara; Cutivet, Emilie; Duperret, Isabelle; Quintana-Murci, L; Robinson-Rechavi, M; Excoffier, Laurent (2013). Evidence for Polygenic Adaptation to Pathogens in the Human Genome. Molecular Biology and Evolution, 30(7), pp. 1544-1558. Oxford University Press 10.1093/molbev/mst080
Peischl, Stephan; Duperret, Isabelle; Kirkpatrick, Mark; Excoffier, Laurent (2013). On the accumulation of deleterious mutations during range expansions. Molecular Ecology, 22(24), pp. 5972-5982. Wiley-Blackwell 10.1111/mec.12524
Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076
Oliveira, Sandra; Marchi, Nina; Excoffier, Laurent (2024). Assessing the limits of local ancestry inference from small reference panels. Molecular ecology resources, 24(6), e13981. Wiley 10.1111/1755-0998.13981
Marchi, Nina; Kapopoulou, Adamantia; Excoffier, Laurent (2024). Demogenomic inference from spatially and temporally heterogeneous samples. Molecular ecology resources, 24(1), pp. 1-11. Wiley 10.1111/1755-0998.13877
Meier, Joana; McGee, Matthew D; Marques, David A; Mwaiko, Salome; Kishe, Mary; Wandera, Sylvester; Neumann, Dirk; Mrosso, Hilary; Chapman, Lauren J; Chapman, Colin A; Kaufman, Les; Taabu-Munyaho, Anthony; Wagner, Catherine E; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2023). Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science, 381(6665), eade2833. American Association for the Advancement of Science 10.1126/science.ade2833
Schlichta, Flávia; Peischl, Stephan; Excoffier, Laurent (2022). The impact of genetic surfing on neutral genomic diversity. Molecular Biology and Evolution, 39(11) Oxford University Press 10.1093/molbev/msac249
Johri, Parul; Aquadro, Charles F.; Beaumont, Mark; Charlesworth, Brian; Excoffier, Laurent; Eyre-Walker, Adam; Keightley, Peter D.; Lynch, Michael; McVean, Gil; Payseur, Bret A.; Pfeifer, Susanne P.; Stephan, Wolfgang; Jensen, Jeffrey D. (2022). Recommendations for improving statistical inference in population genomics. PLoS biology, 20(5), pp. 1-23. Public Library of Science 10.1371/journal.pbio.3001669
Moinet, Antoine; Schlichta, Flavia; Peischl, Stephan; Excoffier, Laurent (2022). Strong neutral sweeps occurring during a population contraction. Genetics, 220(4) Oxford University Press 10.1093/genetics/iyac021
Marchi, Nina; Winkelbach, Laura; Schulz, Ilektra; Brami, Maxime; Hofmanová, Zuzana; Blöcher, Jens; Reyna-Blanco, Carlos S.; Diekmann, Yoan; Thiéry, Alexandre; Kapopoulou, Adamandia; Link, Vivian; Piuz, Valérie; Kreutzer, Susanne; Figarska, Sylwia M.; Ganiatsou, Elissavet; Pukaj, Albert; Struck, Travis J.; Gutenkunst, Ryan N.; Karul, Necmi; Gerritsen, Fokke; ... (2022). The genomic origins of the world’s first farmers. Cell, 185(11), 1842-1859.e18. Cell Press 10.1016/j.cell.2022.04.008
Moinet, Antoine; Peischl, Stephan; Excoffier, Laurent (25 August 2021). Strong neutral sweeps occurring during a population contraction (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.25.457712
Foote, Andrew D.; Gilbert, M. Thomas P.; Gopalakrishnan, Shyam; Louis, Marie; Martin, Michael D.; Morin, Phillip A.; Nykänen, Milaja; Scharff-Olsen, Camilla Hjorth; Excoffier, Laurent (21 August 2021). Evidence of long-term purging of mutation load in killer whale genomes (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.21.457186
Foote, Andrew D.; Hooper, Rebecca; Alexander, Alana; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Excoffier, Laurent; Fordyce Martin, Sarah L.; Forney, Karin A.; Gerrodette, Tim; Gilbert, M. Thomas P.; Guinet, Christophe; ... (2021). Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology, 30(23), pp. 6162-6177. Wiley-Blackwell 10.1111/mec.16137
Currat, Mathias; Quilodrán, Claudio S.; Excoffier, Laurent (2021). Simulations of Human Dispersal and Genetic Diversity. In: Saitou, Naruya (ed.) Evolution of the Human Genome II. Evolutionary Studies (pp. 231-256). Tokyo: Springer Nature 10.1007/978-4-431-56904-6_12
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Choin, Jeremy; Mendoza-Revilla, Javier; Arauna, Lara R.; Cuadros-Espinoza, Sebastian; Cassar, Olivier; Larena, Maximilian; Min-Shan Ko, Albert; Harmant, Christine; Laurent, Romain; Verdu, Paul; Laval, Guillaume; Boland, Anne; Olaso, Robert; Deleuze, Jean-François; Valentin, Frédérique; Ko, Ying-Chin; Jakobsson, Mattias; Gessain, Antoine; Excoffier, Laurent; Stoneking, Mark; ... (2021). Genomic insights into population history and biological adaptation in Oceania. Nature, 592(7855), pp. 583-589. Springer Nature 10.1038/s41586-021-03236-5
Marchi, Nina; Schlichta, Flávia; Excoffier, Laurent (2021). Demographic inference. Current Biology, 31(6), R276-R279. Cell Press 10.1016/j.cub.2021.01.053
Armstrong, Ellie E.; Khan, Anubhab; Taylor, Ryan W.; Gouy, Alexandre; Greenbaum, Gili; Thiéry, Alexandre; Kang, Jonathan T.; Redondo, Sergio A.; Prost, Stefan; Barsh, Gregory; Kaelin, Christopher; Phalke, Sameer; Chugani, Anup; Gilbert, Martin; Miquelle, Dale; Zachariah, Arun; Borthakur, Udayan; Reddy, Anuradha; Louis, Edward; Ryder, Oliver A.; ... (2021). Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection. Molecular Biology and Evolution, 38(6), pp. 2366-2379. Oxford University Press 10.1093/molbev/msab032
Johri, Parul; Riall, Kellen; Becher, Hannes; Excoffier, Laurent; Charlesworth, Brian; Jensen, Jeffrey D. (2021). The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects. Molecular Biology and Evolution, 38(7), pp. 2986-3003. Oxford University Press 10.1093/molbev/msab050
Marques, David A.; Lucek, Kay; Sousa, Vitor C.; Excoffier, Laurent; Seehausen, Ole (2021). Reply to "Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin". Nature Communications, 12(1), p. 2807. Springer Nature 10.1038/s41467-021-23096-x
Excoffier, Laurent; Marchi, Nina; Marques, David Alexander; Matthey-Doret, Remi; Gouy, Alexandre; Sousa, Vitor C. (2021). fastsimcoal2 : demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), pp. 4882-4885. Oxford University Press 10.1093/bioinformatics/btab468
Marchi, Nina; Excoffier, Laurent (2020). Gene flow as a simple cause for an excess of high-frequency-derived alleles. Evolutionary applications, 13(9), pp. 2254-2263. Wiley 10.1111/eva.12998
Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2020). Dissection of the mutation accumulation process during bacterial range expansions. BMC Genomics, 21(1) BioMed Central 10.1186/s12864-020-6676-z
Gouy, Alexandre; Excoffier, Laurent (2020). Polygenic Patterns of Adaptive Introgression in Modern Humans Are Mainly Shaped by Response to Pathogens. Molecular Biology and Evolution, 37(5), pp. 1420-1433. Oxford University Press 10.1093/molbev/msz306
Gilbert, Kimberly J.; Pouyet, Fanny; Excoffier, Laurent; Peischl, Stephan (2020). Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination. Current Biology, 30(1), pp. 101-107. Cell Press 10.1016/j.cub.2019.11.063
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Excoffier, Laurent; Hofer, Tamara; Foll, Matthieu (2009). Detecting loci under selection in a hierarchically structured population. Heredity, 103(4), pp. 285-298. London: Oliver and Boyd 10.1038/hdy.2009.74
Hofer, Tamara; Ray, Nicolas; Wegmann, Daniel; Excoffier, Laurent (2009). Large allele frequency differences between human continental groups are more likely to have occurred by drift during range expansions than by selection. Annals of human genetics, 73(Part 1), pp. 95-108. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2008.00489.x
Makrythanasis, Periklis; Kapranov, Philipp; Bartoloni, Lucia; Reymond, Alexandre; Deutsch, Samuel; Guigo, Roderic; Denoeud, France; Drenkow, Jorg; Rossier, Colette; Ariani, Francesca; Capra, Valeria; Excoffier, Laurent; Renieri, Alessandra; Gingeras, Thomas R.; Antonarakis, Stylianos E. (2009). Variation in Novel Exons (RACEfrags) of the MECP2 Gene in Rett Syndrome Patients and Controls. Human mutation, 30(9), E866 - E879. Hoboken, N.J.: Wiley-Blackwell 10.1002/humu.21073
Petit, Rémy J.; Excoffier, Laurent (2009). Gene flow and species delimitation. Trends in ecology & evolution, 24(7), pp. 386-393. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2009.02.011
Poloni, Estella S.; Naciri, Yamama; Bucho, Rute; Niba, Régine; Kervaire, Barbara; Excoffier, Laurent; Langaney, André; Sanchez-Mazas, Alicia (2009). Genetic Evidence for Complexity in Ethnic Differentiation and History in East Africa. Annals of human genetics, 73(6), pp. 582-600. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2009.00541.x
Ray, Nicolas; Excoffier, Laurent (2009). Inferring past demography using spatially-explicit population genetic models. Human biology, 81(2-3), pp. 141-157. Detroit, Mich.: Wayne State University Press 10.3378/027.081.0303
Soland-Reckeweg, Gabriele; Heckel, Gerald; Neumann, Peter; Fluri, Peter; Excoffier, Laurent (2009). Gene flow in admixed populations and implications for the conservation of the Western honeybee, Apis mellifera. Journal of insect conservation, 13(3), pp. 317-328. London: Springer Netherlands 10.1007/s10841-008-9175-0
Wegmann, Daniel; Leuenberger, Christoph; Excoffier, Laurent (2009). Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood. Genetics, 182(4), pp. 1207-1218. Bethesda, Md.: Genetics Society of America 10.1534/genetics.109.102509
Giger, Thomas; Excoffier, Laurent; Amstutz, Ursula; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Kelso, Janet; Largiadèr, Carlo R (2008). Population transcriptomics of life-history variation in the genus Salmo. Molecular Ecology, 17(13), pp. 3095-3108. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03820.x
Neuenschwander, Samuel; Largiadèr, Carlo R; Ray, Nicolas; Currat, Mathias; Vonlanthen, Pascal; Excoffier, Laurent (2008). Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Molecular Ecology, 17(3), pp. 757-772. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03621.x
Currat, M.; Ray, N.; Excoffier, L. (2008). Genetic simulations of population interactions during past human expansions in Europe. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 37-47). Cambridge: McDonald Institute for Archaeological Research
Currat, Mathias; Ruedi, Manuel; Petit, Rémy J.; Excoffier, Laurent (2008). The hidden side of invasions: massive introgression by local genes. Evolution, 62(8), pp. 1908-1920. Hoboken, N.J.: Wiley 10.1111/j.1558-5646.2008.00413.x
Excoffier, Laurent; Ray, Nicolas (2008). Surfing during population expansions promotes genetic revolutions and structuration. Trends in ecology & evolution, 23(7), pp. 347-351. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2008.04.004
Excoffier, L.; Ray, N.; Currat, M. (2008). Where was Paradise? A simulation study of the spread of early modern humans in heterogeneous environments. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 9-18). Cambridge: McDonald Institute for Archaeological Research
Fagundes, Nelson J. R.; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco M.; Bonatto, Sandro L.; Excoffier, Laurent (2008). Reply to Garrigan and Hammer: Ancient lineages and assimilation. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 105(2), E4. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0711261105
Ray, N.; Currat, M.; Excoffier, L. (2008). Incorporating environmental heterogeneity in spatially-explicit simulations of human genetic diversity. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 103-117). Cambridge: McDonald Institute for Archaeological Research
Ruedi, Manuel; Walter, Simon; Fischer, Martin C.; Scaravelli, Dino; Excoffier, Laurent; Heckel, Gerald (2008). Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology, 17(7), pp. 1801-1814. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03702.x
Wang, Sijia; Ray, Nicolas; Rojas, Winston; Parra, Maria V.; Bedoya, Gabriel; Gallo, Carla; Poletti, Giovanni; Mazzotti, Guido; Hill, Kim; Hurtado, Ana M.; Camrena, Beatriz; Nicolini, Humberto; Klitz, William; Barrantes, Ramiro; Molina, Julio A.; Freimer, Nelson B.; Bortolini, Maria Cátira; Salzano, Francisco M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; ... (2008). Geographic Patterns of Genome Admixture in Latin American Mestizos. PLoS genetics, 4(3), e1000037. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1000037
Wegmann, Daniel; Dupanloup, Isabelle; Excoffier, Laurent (2008). Width of Gene Expression Profile Drives Alternative Splicing. PLoS ONE, 3(10), e3587. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0003587
Vonlanthen, Pascal; Excoffier, Laurent; Bittner, David; Persat, H; Neuenschwander, S; Largiadèr, Carlo (2007). Genetic analysis of potential postglacial watershed crossings in central Europe by the bullhead (Cottus gobio L). Molecular Ecology, 16(21), pp. 4572-4584. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03531.x
Giger, Thomas; Amstutz, Ursula; Excoffier, Laurent; Champigneulle, Alexis; Day, Philip; Powell, Richard; Largiadèr, Carlo (2007). The genetic basis of smoltification: Functional genomics tools facilitate the search for the needle in the haystack. In: Harris, Graeme; Millner, Nigel (eds.) Sea Trout: Biology Conservation and Management (pp. 183-195). Chichester: John Wiley & Sons 10.1002/9780470996027.ch13
Excoffier, Laurent (2007). Analysis of Population Subdivision. In: Balding, David J.; Bishop, Martin; Cannings, Chris (eds.) Handbook of Statistical Genetics (pp. 980-1020). Chichester: John Wiley & Sons
Fagundes, Nelson; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco; Bonatto, Sandro; Excoffier, Laurent (2007). Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 104(45), pp. 17614-17619. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0708280104
Fink, Sabine; Excoffier, Laurent; Heckel, Gerhard (2007). High variability and non-neutral evolution of the mammalian avpr1a gene. BMC evolutionary biology, 7(1), p. 176. London: BioMed Central 10.1186/1471-2148-7-176
Pawlowski, Jan; Fahrni, José; Lecroq, B; Longet, David; Cornelius, N; Excoffier, Laurent; Cedhagen, Tomas; Gooday, Andrew (2007). Bipolar gene flow in deep-sea benthic foraminifera. Molecular Ecology, 16(19), pp. 4089-4096. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03465.x
Schweizer, Manuel; Excoffier, Laurent; Heckel, Gerald (2007). Fine-scale genetic structure and dispersal in the common vole (Microtus arvalis). Molecular Ecology, 16(12), pp. 2463-2473. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03284.x
Wang, Sijia; Lewis, Cecil; Jakobsson, Mattias; Ramachandran, Sohini; Ray, Nicolas; Bedoya, Gabriel; Rojas, Winston; Parra, Maria; Molina, Julio; Gallo, Carla; Mazzotti, Guido; Poletti, Giovanni; Hill, Kim; Hurtado, Ana; Labuda, Damian; Klitz, William; Barrantes, Ramiro; Bortolini, Maria; Salzano, Francisco; Petzl-Erler, Maria; ... (2007). Genetic Variation and Population Structure in Native Americans. PLoS genetics, 3(11), e185. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.0030185
Giger, Thomas; Excoffier, Laurent; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Powell, Richard; Largiadèr, Carlo R (2006). Life history shapes gene expression in salmonids. Current Biology, 16(8), R281-R282. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.03.053
Currat, Mathias; Excoffier, Laurent; Maddison, Wayne; Otto, Sarah; Ray, Nicolas; Whitlock, Michael; Yeaman, Sam (2006). Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans". Science, 313(5784), p. 172. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1122712
Berthier, Pierre; Excoffier, Laurent; Ruedi, Manuel (2006). Replacement of mtDNA and cryptic hybridization between two sibling bat species Myotis myotis and Myotis blythii. Proceedings of the Royal Society. Series B - biological sciences, 273(1605), pp. 3101-3123. London: Royal Society of London 10.1098/rspb.2006.3680
Drake, Jared; Bird, Christine; Nemesh, James; Thomas, Daryl; Newton-Cheh, Christopher; Reymond, Alexandre; Excoffier, Laurent; Attar, Homa; Antonarakis, Stylianos; Dermitzakis, Emmanouil; Hirschhorn, Joel (2006). Conserved noncoding sequences are selectively constrained and not mutation cold spots. Nature genetics, 38(2), pp. 223-227. New York, N.Y.: Nature America 10.1038/ng1710
Excoffier, Laurent (2006). Neandertal genetic diversity: A fresh look from old samples. Current Biology, 16(16), R650-R652. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.07.035
Excoffier, Laurent; Heckel, Gerald (2006). Computer programs for population genetics data analysis: a survival guide. Nature Reviews. Genetics, 7(10), pp. 745-758. London: Natue Publishing Group 10.1038/nrg1904
Fink, Sabine; Excoffier, Laurent; Heckel, Gerald (2006). Mammalian monogamy is not controlled by a single gene. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 103(29), pp. 10956-10960. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0602380103
Klopfstein, Seraina; Currat, Mathias; Excoffier, Laurent (2006). The fate of mutations surfing on the wave of a range expansion. Molecular Biology and Evolution, 23(3), pp. 482-490. Oxford: Oxford University Press 10.1093/molbev/msj057
Wegmann, Daniel; Currat, Mathias; Excoffier, Laurent (2006). Molecular diversity after a range expansion in heterogeneous environments. Genetics, 174(4), pp. 2009-2020. Bethesda, Md.: Genetics Society of America 10.1534/genetics.106.062851
Currat, Mathias; Excoffier, Laurent (2004). Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe. PLoS biology, 2(12), e421. Public Library of Science 10.1371/journal.pbio.0020421
Laval, Guillaume; Excoffier, Laurent (2004). SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics, 20(15), pp. 2485-2487. Oxford University Press 10.1093/bioinformatics/bth264
Marques, David Alexander; Lucek, Kay Jurka Olaf; Häsler, Marcel; Feller, Anna Fiona; Meier, Joana; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Molecular Ecology, 26(1), pp. 7-24. Wiley-Blackwell 10.1111/mec.13774
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Heckel, G.; Fink, S. (2008). Evolution of the arginine vasopressin 1 a receptor and implications for mammalian social behavior. In: Landgraf, Rainer; Neumann, Inga (eds.) Advances in vasopressin and oxytocin - from gene to behavior 170 (pp. 321-330). Amsterdam: Elsevier 10.1016/S0079-6123(08)00426-3
Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644
Fischer, Martin; Foll, Matthieu; Heckel, Gerald; Excoffier, Laurent (2014). Continental-Scale Footprint of Balancing and Positive Selection in a Small Rodent (Microtus arvalis). PLoS ONE, 9(11), e112332. Public Library of Science
Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x
Ruedi, Manuel; Walter, Simon; Fischer, Martin C.; Scaravelli, Dino; Excoffier, Laurent; Heckel, Gerald (2008). Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology, 17(7), pp. 1801-1814. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03702.x
Amorim, Carlos Eduardo G.; Daub, Joséphine; Salzano, Francisco M.; Foll, Matthieu; Excoffier, Laurent (2015). Detection of convergent genome-wide signals of adaptation to tropical forests in humans. PLoS ONE, 10(4), pp. 1-19. Public Library of Science 10.1371/journal.pone.0121557
Fischer, Martin; Foll, Matthieu; Heckel, Gerald; Excoffier, Laurent (2014). Continental-Scale Footprint of Balancing and Positive Selection in a Small Rodent (Microtus arvalis). PLoS ONE, 9(11), e112332. Public Library of Science
Foll, Matthieu; Gaggiotti, Oscar; Daub, Joséphine; Vatsiou, Alexandra; Excoffier, Laurent (2014). Widespread Signals of Convergent Adaptation to High Altitude in Asia and America. American journal of human genetics, 95(4), pp. 394-407. Cell Press 10.1016/j.ajhg.2014.09.002
Perry, George H.; Foll, Matthieu; Grenier, Jean-Christophe; Patin, Etienne; Nédélec, Yohann; Pacis, Alain; Barakatt, Maxime; Gravel, Simon; Zhou, Xiang; Nsobya, Sam L.; Excoffier, Laurent; Quintana-Murci, Lluis; Dominy, Nathaniel J.; Barreiro, Luis B. (2014). Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(35), E3596-E3603. National Academy of Sciences NAS 10.1073/pnas.1402875111
Excoffier, Laurent; Dupanloup, Isabelle; Huerta-Sánchez, Emilia; Sousa, Vitor C.; Foll, Matthieu (2013). Robust demographic inference from genomic and SNP data. PLoS genetics, 9(10), e1003905. Public Library of Science 10.1371/journal.pgen.1003905
Sunnaker, Mikael; Busetto, Alberto Giovanni; Numminen, Elina; Corander, Jukka; Foll, Matthieu; Dessimoz, Christophe (2013). Approximate Bayesian Computation. PLoS computational biology, 9(1), e1002803. Public Library of Science 10.1371/journal.pcbi.1002803
Alves, Isabel; Srámková Hanulová, A.; Foll, Matthieu; Excoffier, Laurent (2012). Genomic Data Reveal a Complex Making of Humans. PLoS genetics, 8(7), e1002837. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1002837
Hofer, Tamara; Foll, Matthieu; Excoffier, Laurent (2012). Evolutionary forces shaping genomic islands of population differentiation in humans. BMC Genomics, 13(1), p. 107. London: BioMed Central 10.1186/1471-2164-13-107
Excoffier, Laurent; Foll, Matthieu (2011). fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics, 27(9), pp. 1332-1334. Oxford: Oxford University Press 10.1093/bioinformatics/btr124
Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x
Gaggiotti, Oscar E.; Foll, Matthieu (2010). Quantifying population structure using the F-model. Molecular ecology resources, 10(5), pp. 821-830. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02873.x
Excoffier, Laurent; Foll, Matthieu; Petit, Rémy J. (2009). Genetic Consequences of Range Expansions. Annual review of ecology, evolution, and systematics, 40(1), pp. 481-501. Palo Alto, Calif.: Annual Reviews Inc. 10.1146/annurev.ecolsys.39.110707.173414
Excoffier, Laurent; Hofer, Tamara; Foll, Matthieu (2009). Detecting loci under selection in a hierarchically structured population. Heredity, 103(4), pp. 285-298. London: Oliver and Boyd 10.1038/hdy.2009.74
Gaggiotti, Oscar E.; Bekkevold, Dorte; Jorgensen, Hanne B.H.; Foll, Matthieu; Carvalho, Gary R.; Andre, Carl; Ruzzante, Daniel E. (2009). Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: atlantic herring as a case study. Evolution, 63(11), 2939 - 2951. Hoboken, N.J.: Wiley 10.1111/j.1558-5646.2009.00779.x
Guillot, Gilles; Foll, Matthieu (2009). Correcting for ascertainment bias in the inference of population structure. Bioinformatics, 25(4), pp. 552-554. Oxford: Oxford University Press 10.1093/bioinformatics/btn665
Foote, Andrew D.; Gilbert, M. Thomas P.; Gopalakrishnan, Shyam; Louis, Marie; Martin, Michael D.; Morin, Phillip A.; Nykänen, Milaja; Scharff-Olsen, Camilla Hjorth; Excoffier, Laurent (21 August 2021). Evidence of long-term purging of mutation load in killer whale genomes (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.21.457186
Foote, Andrew D.; Hooper, Rebecca; Alexander, Alana; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Excoffier, Laurent; Fordyce Martin, Sarah L.; Forney, Karin A.; Gerrodette, Tim; Gilbert, M. Thomas P.; Guinet, Christophe; ... (2021). Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology, 30(23), pp. 6162-6177. Wiley-Blackwell 10.1111/mec.16137
Foote, Andrew D.; Martin, Michael D.; Louis, Marie; Pacheco, George; Robertson, Kelly M.; Sinding, Mikkel-Holger S.; Amaral, Ana R.; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dabin, Willy; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Ferguson, Steven H.; ... (2019). Killer whale genomes reveal a complex history of recurrent admixture and vicariance. Molecular Ecology, 28(14), pp. 3427-3444. Wiley-Blackwell 10.1111/mec.15099
Foote, Andrew David; Vijay, Nagarjun; Ávila-Arcos, María C.; Baird, Robin W.; Durban, John W.; Fumagalli, Matteo; Gibbs, Richard A.; Hanson, M. Bradley; Korneliussen, Thorfinn S.; Martin, Michael D.; Robertson, Kelly M.; Martins Conde e Sousa, Vitor; Vieira, Filipe G.; Vinar, Tomás; Wade, Paul; Worley, Kim C.; Excoffier, Laurent; Morin, Phillip A.; Gilbert, M. Thomas P. and Wolf, Jochen B.W. (2016). Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nature communications, 7(7), p. 11693. Nature Publishing Group 10.1038/ncomms11693
Schubert, Mikkel; Jónsson, Hákon; Chang, Dan; Der Sarkissian, Clio; Ermini, Luca; Ginolhac, Aurélien; Albrechtsen, Anders; Dupanloup, Isabelle; Foucal, Adrien; Petersen, Bent; Fumagalli, Matteo; Raghavan, Maanasa; Seguin-Orlando, Andaine; Korneliussen, Thorfinn S.; Velazquez, Amhed M. V.; Stenderup, Jesper; Hoover, Cindi A.; Rubin, Carl-Johan; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; ... (2014). Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(52), E5661-E5669. National Academy of Sciences NAS 10.1073/pnas.1416991111
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Gilbert, Kimberly J.; Pouyet, Fanny; Excoffier, Laurent; Peischl, Stephan (2020). Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination. Current Biology, 30(1), pp. 101-107. Cell Press 10.1016/j.cub.2019.11.063
Gilbert, Kimberly J.; Peischl, Stephan; Excoffier, Laurent (2018). Mutation load dynamics during environmentally-driven range shifts. PLoS genetics, 14(9), pp. 1-18. Public Library of Science 10.1371/journal.pgen.1007450
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Armstrong, Ellie E.; Khan, Anubhab; Taylor, Ryan W.; Gouy, Alexandre; Greenbaum, Gili; Thiéry, Alexandre; Kang, Jonathan T.; Redondo, Sergio A.; Prost, Stefan; Barsh, Gregory; Kaelin, Christopher; Phalke, Sameer; Chugani, Anup; Gilbert, Martin; Miquelle, Dale; Zachariah, Arun; Borthakur, Udayan; Reddy, Anuradha; Louis, Edward; Ryder, Oliver A.; ... (2021). Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection. Molecular Biology and Evolution, 38(6), pp. 2366-2379. Oxford University Press 10.1093/molbev/msab032
Excoffier, Laurent; Marchi, Nina; Marques, David Alexander; Matthey-Doret, Remi; Gouy, Alexandre; Sousa, Vitor C. (2021). fastsimcoal2 : demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), pp. 4882-4885. Oxford University Press 10.1093/bioinformatics/btab468
Gouy, Alexandre; Excoffier, Laurent (2020). Polygenic Patterns of Adaptive Introgression in Modern Humans Are Mainly Shaped by Response to Pathogens. Molecular Biology and Evolution, 37(5), pp. 1420-1433. Oxford University Press 10.1093/molbev/msz306
Gouy, Alexandre; Daub, Joséphine T.; Excoffier, Laurent (2017). Detecting gene subnetworks under selection in biological pathways. Nucleic acids research, 45(16), e149. Information Retrieval Ltd. 10.1093/nar/gkx626
Wang, Xuejing; Heckel, Gerald (2024). Genome-wide relaxation of selection and the evolution of the island syndrome in Orkney voles. Genome research, 34(6), pp. 851-862. Cold Spring Harbor, N.Y 10.1101/gr.278487.123
Labutin, Anton; Heckel, Gerald (2024). Genome-wide support for incipient Tula hantavirus species within a single rodent host lineage. Virus evolution, 10(veae002) Oxford University Press 10.1093/ve/veae002
Wang, Xuejing; Peischl, Stephan; Heckel, Gerald (2023). Demographic history and genomic consequences of 10,000 generations of isolation in a wild mammal. Current biology, 33(10), 2051-2062.e4. Cell Press 10.1016/j.cub.2023.04.042
Mehl, Calvin; Wylezich, Claudia; Geiger, Christina; Schauerte, Nicole; Mätz-Rensing, Kerstin; Nesseler, Anne; Höper, Dirk; Linnenbrink, Miriam; Beer, Martin; Heckel, Gerald; Ulrich, Rainer G. (2023). Reemergence of Lymphocytic Choriomeningitis Mammarenavirus, Germany. Emerging infectious diseases, 29(3), pp. 631-634. Centers for Disease Control and Prevention 10.3201/eid2903.221822
Baca, Mateusz; Popović, Danijela; Lemanik, Anna; Bañuls-Cardona, Sandra; Conard, Nicholas J.; Cuenca-Bescós, Gloria; Desclaux, Emmanuel; Fewlass, Helen; Garcia, Jesus T.; Hadravova, Tereza; Heckel, Gerald; Horáček, Ivan; Vlasta Knul, Monika; Lebreton, Loïc; López-García, Juan Manuel; Luzi, Elisa; Marković, Zoran; Mauch Lenardić, Jadranka; Murelaga, Xabier; Noiret, Pierre; ... (2023). Ancient DNA reveals interstadials as a driver of common vole population dynamics during the last glacial period. Journal of biogeography, 50(1), pp. 183-196. Wiley 10.1111/jbi.14521
Jeske, Kathrin; Schulz, Jana; Tekemen, Duygu; Balciauskas, Linas; Balciauskiene, Laima; Hiltbrunner, Melanie; Drewes, Stephan; Mayer-Scholl, Anne; Heckel, Gerald; Ulrich, Rainer G. (2022). Cocirculation of Leptospira spp. andmultiple orthohantaviruses in rodents, Lithuania, Northern Europe. Transboundary and emerging diseases, 69(5), e3196-e3201. Wiley 10.1111/tbed.14470
Jeske, Kathrin; Herzig-Straschil, Barbara; Răileanu, Cristian; Kunec, Dusan; Tauchmann, Oliver; Emirhar, Duygu; Schmidt, Sabrina; Trimpert, Jakob; Silaghi, Cornelia; Heckel, Gerald; Ulrich, Rainer G.; Drewes, Stephan (2022). Zoonotic pathogen screening of striped field mice (Apodemus agrarius) from Austria. Transboundary and emerging diseases, 69(2), pp. 886-890. Wiley 10.1111/tbed.14015
Saxenhofer, Moritz; Labutin, Anton; White, Thomas A.; Heckel, Gerald (2022). Host genetic factors associated with the range limit of a European hantavirus. Molecular Ecology, 31(1), pp. 252-265. Wiley-Blackwell 10.1111/mec.16211
Tang, Qindong; Burri, Reto; Liu, Yang; Suh, Alexander; Sundev, Gombobaatar; Heckel, Gerald; Schweizer, Manuel (2022). Seasonal migration patterns and the maintenance of evolutionary diversity in a cryptic bird radiation. Molecular Ecology, 31(2), pp. 632-645. Wiley-Blackwell 10.1111/mec.16241
Duarte, Margarida Alexandra; Rodríguez Fernandes, Carlos; Heckel, Gerald; da Luz Mathias, Maria; Bastos-Silveira, Cristiane (2021). Variation and Selection in the Putative Sperm-Binding Region of ZP3 in Muroid Rodents: A Comparison between Cricetids and Murines. Genes, 12(9), p. 1450. MDPI 10.3390/genes12091450
Jeske, Kathrin; Emirhar, Duygu; García, Jesús T.; González-Barrio, David; Olea, Pedro P.; Ruiz Fons, Francisco; Schulz, Jana; Mayer-Scholl, Anne; Heckel, Gerald; Ulrich, Rainer G. (2021). FREQUENT LEPTOSPIRA SPP. DETECTION BUT ABSENCE OF TULA ORTHOHANTAVIRUS IN MICROTUS SPP. VOLES, NORTHWESTERN SPAIN. Journal of wildlife diseases, 57(4), pp. 733-742. Wildlife Disease Association 10.7589/JWD-D-20-00109
Schneider, Julia; Hoffmann, Bernd; Fevola, Cristina; Schmidt, Marie Luisa; Imholt, Christian; Fischer, Stefan; Ecke, Frauke; Hörnfeldt, Birger; Magnusson, Magnus; Olsson, Gert E.; Rizzoli, Annapaola; Tagliapietra, Valentina; Chiari, Mario; Reusken, Chantal; Bužan, Elena; Kazimirova, Maria; Stanko, Michal; White, Thomas A.; Reil, Daniela; Obiegala, Anna; ... (2021). Geographical Distribution and Genetic Diversity of Bank Vole Hepaciviruses in Europe. Viruses, 13(7), p. 1258. MDPI 10.3390/v13071258
Schmidt, Sabrina; Reil, Daniela; Jeske, Kathrin; Drewes, Stephan; Rosenfeld, Ulrike M.; Fischer, Stefan; Spierling, Nastasja G.; Labutin, Anton; Heckel, Gerald; Jacob, Jens; Ulrich, Rainer G.; Imholt, Christian (2021). Spatial and Temporal Dynamics and Molecular Evolution of Tula orthohantavirus in German Vole Populations. Viruses, 13(6), p. 1132. MDPI 10.3390/v13061132
Cierniak, Filip; von Arnim, Felicitas; Heckel, Gerald; Ulrich, Rainer G.; Groschup, Martin H.; Eiden, Martin (2021). A Putative Novel Hepatitis E Virus Genotype 3 Subtype Identified in Rabbit, Germany 2016. Viruses, 13(6), p. 1065. MDPI 10.3390/v13061065
Drewes, Stephan; Jeske, Kathrin; Straková, Petra; Balciauskas, Linas; Ryll, René; Balciauskiene, Laima; Kohlhause, David; Schnidrig, Guy-Alain; Hiltbrunner, Melanie; Špakova, Aliona; Insodaite, Rasa; Petraityte-Burneikiene, Rasa; Heckel, Gerald; Ulrich, Rainer G. (2021). Identification of a novel hantavirus strain in the root vole (Microtus oeconomus) in Lithuania, Eastern Europe. Infection, genetics and evolution, 90, p. 104520. Elsevier 10.1016/j.meegid.2020.104520
Li, Hao-Sen; Huang, Yu-Hao; Chen, Mei-Lan; Ren, Zhan; Qiu, Bo-Yuan; De Clercq, Patrick; Heckel, Gerald; Pang, Hong (2021). Genomic insight into diet adaptation in the biological control agent Cryptolaemus montrouzieri. BMC Genomics, 22(135), pp. 1-12. BioMed Central 10.1186/s12864-021-07442-3
Jeske, K.; Jacob, J.; Drewes, S.; Pfeffer, M.; Heckel, G.; Ulrich, R. G.; Imholt, C. (2021). Hantavirus–Leptospira coinfections in small mammals from central Germany. Epidemiology and infection, 149(e97), pp. 1-10. Cambridge University Press 10.1017/S0950268821000443
Hiltbrunner, Melanie; Heckel, Gerald (2020). Assessing Genome-Wide Diversity in European Hantaviruses through Sequence Capture from Natural Host Samples. Viruses, 12(7), p. 749. MDPI 10.3390/v12070749
Binder, Florian; Ryll, René; Drewes, Stephan; Jagdmann, Sandra; Reil, Daniela; Hiltbrunner, Melanie; Rosenfeld, Ulrike M.; Imholt, Christian; Jacob, Jens; Heckel, Gerald; Ulrich, Rainer G. (2020). Spatial and Temporal Evolutionary Patterns in Puumala Orthohantavirus (PUUV) S Segment. Pathogens, 9(7) MDPI AG 10.3390/pathogens9070548
Jeske, Kathrin; Hiltbrunner, Melanie; Drewes, Stephan; Ryll, René; Wenk, Matthias; Špakova, Aliona; Petraitytė‑Burneikienė, Rasa; Heckel, Gerald; Ulrich, Rainer G. (2019). Field vole‑associated Traemmersee hantavirus from Germany represents a novel hantavirus species. Virus genes, 55(6), pp. 848-853. Springer 10.1007/s11262-019-01706-7
Ryll, René; Heckel, Gerald; Corman, Victor M.; Drexler, Jan Felix; Ulrich, Rainer G. (2019). Genomic and spatial variability of a European common vole hepevirus. Archives of virology, 164(11), pp. 2671-2682. Springer 10.1007/s00705-019-04347-1
Wang, Xuejing; Que, Pinjia; Heckel, Gerald; Hu, Junhua; Zhang, Xuecong; Chiang, Chung-Yu; Zhang, Nan; Huang, Qin; Liu, Simin; Martinez, Jonathan; Pagani-Núñez, Emilio; Dingle, Caroline; Leung, Yu Yan; Székely, Tamás; Zhang, Zhengwang; Liu, Yang (2019). Genetic, phenotypic and ecological differentiation suggests incipient speciation in two Charadrius plovers along the Chinese coast. BMC evolutionary biology, 19(1), pp. 1-18. BioMed Central 10.1186/s12862-019-1449-5
Saxenhofer, Moritz; Schmidt, Sabrina; Ulrich, Rainer G.; Heckel, Gerald (2019). Secondary contact between diverged host lineages entails ecological speciation in a European hantavirus. PLoS biology, 17(2), e3000142. Public Library of Science 10.1371/journal.pbio.3000142
Li, Hao-Sen; Heckel, Gerald; Huang, Yu-Hao; Fan, Wei-Jian; Ślipiński, Adam; Pang, Hong (2019). Genomic changes in the biological control agent Cryptolaemus montrouzieri associated with introduction. Evolutionary applications, 12(5), pp. 989-1000. Wiley 10.1111/eva.12774
Pedreschi, Debbi; García-Rodríguez, Oxala; Yannic, Glenn; Cantarello, Elena; Diaz, Anita; Golicher, Duncan; Korstjens, Amanda H.; Heckel, Gerald; Searle, Jeremy B.; Gillingham, Phillipa; Hardouin, Emilie A.; Stewart, John R. (2019). Challenging the European southern refugium hypothesis: Species‐specific structures versus general patterns of genetic diversity and differentiation among small mammals. Global Ecology and Biogeography, 28(2), pp. 262-274. Wiley-Blackwell 10.1111/geb.12828
Bize, Pierre; Lowe, Imogen; Hürlimann, Mikko Lehto; Heckel, Gerald (2018). Effects of the Mitochondrial and Nuclear Genomes on Nonshivering Thermogenesis in a Wild Derived Rodent. Integrative and comparative biology, 58(3), pp. 532-543. Oxford University Press 10.1093/icb/icy072
Zemanova, Miriam Andela; Broennimann, Olivier; Guisan, Antoine; Knop, Eva; Heckel, Gerald (2018). Slimy invasion: Climatic niche and current and future biogeography of Arion slug invaders. Diversity and Distributions, 24(11), pp. 1627-1640. Wiley-Blackwell 10.1111/ddi.12789
Ryll, R; Eiden, M; Heuser, E; Weinhardt, M; Ziege, M; Höper, D; Groschup, MH; Heckel, Gerald; Johne, R; Ulrich, RG (2018). Hepatitis E virus in feral rabbits along a rural-urban transect in Central Germany. Infection, genetics and evolution, 61(61), pp. 155-159. Elsevier 10.1016/j.meegid.2018.03.019
Schmid, Sarah; Neuenschwander, Samuel; Pitteloud, Camille; Heckel, Gerald; Pajkovic, Mila; Arlettaz, Raphaël; Alvarez, Nadir (2018). Spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus revealed by museum genomics. Ecology and evolution, 8(3), pp. 1480-1495. John Wiley & Sons, Inc. 10.1002/ece3.3699
Saxenhofer, Moritz; Weber de Melo, Vanessa; Ulrich, Rainer G.; Heckel, Gerald (2017). Revised time scales of RNA virus evolution based on spatial information. Proceedings of the Royal Society. Series B - biological sciences, 284(1860), p. 20170857. Royal Society of London 10.1098/rspb.2017.0857
Ryll, René; Bernstein, Samuel; Heuser, Elisa; Schlegel, Mathias; Dremsek, Paul; Zumpe, Maxi; Wolf, Sandro; Pépin, Michel; Bajomi, Daniel; Müller, Gabi; Heiberg, Ann-Charlotte; Spahr, Carina; Lang, Johannes; Groschup, Martin H.; Ansorge, Hermann; Freise, Jona; Guenther, Sebastian; Baert, Kristof; Ruiz-Fons, Francisco; Pikula, Jiri; ... (2017). Detection of rat hepatitis E virus in wild Norway rats (Rattus norvegicus) and Black rats (Rattus rattus) from 11 European countries. Veterinary microbiology, 208(208), pp. 58-68. Elsevier 10.1016/j.vetmic.2017.07.001
Rosenfeld, Ulrike M.; Drewes, Stephan; Sheikh Ali, Hanan; Sadowska, Edyta T.; Mikowska, Magdalena; Heckel, Gerald; Koteja, Pawel; Ulrich, Rainer G. (2017). A highly divergent Puumala virus lineage in southern Poland. Archives of virology, 162(5), pp. 1177-1185. Springer 10.1007/s00705-016-3200-5
Drewes, Stephan; Sheikh Ali, Hanan; Saxenhofer, Moritz; Rosenfeld, Ulrike M.; Binder, Florian; Cuypers, Fabian; Schlegel, Mathias; Röhrs, Susanne; Heckel, Gerald; Ulrich, Rainer G. (2017). Host-Associated Absence of Human Puumala Virus Infections in Northern and Eastern Germany. Emerging infectious diseases, 23(1), pp. 83-86. U.S. National Center for Infectious Diseases 10.3201/eid2301.160224
Resano Mayor, Jaime; Fernández-Martín, Àngel; Hernández-Gómez, Sergio; Toranzo, Ignasi; España, Antonio; Gil, Juan Antonio; de Gabriel, Miguel; Roa-Álvarez, Isabel; Strinella, Eliseo; Hobson, Keith A.; Heckel, Gerald; Arlettaz, Raphaël (2017). Integrating genetic and stable isotope analyses to infer the population structure of the White-winged Snowfinch Montifringilla nivalis in Western Europe. Journal of ornithology, 158(2), pp. 395-405. Springer 10.1007/s10336-016-1413-8
Duarte, Margarida Alexandra; Heckel, Gerald; da Luz Mathias, Maria; Bastos-Silveira, Cristiane (2016). Olfactory receptors and behavioural isolation: a study on Microtus voles. Mammal resarch, 61(4), pp. 399-407. Springer 10.1007/s13364-016-0266-0
Schmidt, Sabrina; Saxenhofer, Moritz; Drewes, Stephan; Schlegel, Mathias; Wanka, Konrad M.; Frank, Raphael; Klimpel, Sven; von Blanckenhagen, Felix; Maaz, Denny; Herden, Christiane; Freise, Jona; Wolf, Ronny; Stubbe, Michael; Borkenhagen, Peter; Ansorge, Hermann; Eccard, Jana A.; Lang, Johannes; Jourdain, Elsa; Jacob, Jens; Marianneau, Philippe; ... (2016). High genetic structuring of Tula hantavirus. Archives of virology, 161(5), pp. 1135-1149. Springer 10.1007/s00705-016-2762-6
Weber de Melo, Vanessa; Sheikh Ali, Hanan; Freise, Jona; Kühnert, Denise; Essbauer, Sandra; Mertens, Marc; Wanka, Konrad M.; Drewes, Stephan; Ulrich, Rainer G.; Heckel, Gerald (2015). Spatiotemporal dynamics of Puumala hantavirus associated with its rodent host, Myodes glareolus. Evolutionary applications, 8(6), pp. 545-559. Wiley 10.1111/eva.12263
Zemanova, Miriam Andela; Knop, Eva; Heckel, Gerald (2015). Development and characterization of novel microsatellite markers for Arion slug species. Conservation genetics resources, 7(2), pp. 501-503. Springer 10.1007/s12686-014-0406-2
Sheikh Ali, Hanan; Drewes, Stephan; Weber de Melo, Vanessa; Schlegel, Mathias; Freise, Jona; Groschup, Martin H.; Heckel, Gerald; Ulrich, Rainer G. (2015). Complete genome of a Puumala virus strain from Central Europe. Virus genes, 50(2), pp. 292-298. Nijhoff 10.1007/s11262-014-1157-6
Beysard, Mathias; Krebs-Wheaton, Rebecca; Heckel, Gerald (2015). Tracing reinforcement through asymmetrical partner preference in the European common vole Microtus arvalis. BMC evolutionary biology, 15(1) BioMed Central 10.1186/s12862-015-0455-5
Beysard, Mathias; Heckel, Gerald (2014). Structure and dynamics of hybrid zones at different stages of speciation in the common vole (Microtus arvalis). Molecular Ecology, 23(3), pp. 673-687. Wiley-Blackwell 10.1111/mec.12613
Cucchi, Thomas; Barnett, Ross; Martínková, Natália; Renaud, Sabrina; Renvoisé, Elodie; Evin, Allowen; Sheridan, Alison; Mainland, Ingrid; Wickham-Jones, Caroline; Tougard, Christelle; Quéré, Jean-Pierre; Pascal, Michel; Pascal, Marine; Heckel, Gerald; O'Higgins, Paul; Searle, Jeremy B.; Dobney, Keith M. (2014). The changing pace of insular life: 5000 years of microevolution in the Orkney vole (Microtus arvalis orcadensis). Evolution, 68(10), pp. 2804-2820. Wiley 10.1111/evo.12476
Fischer, Martin; Foll, Matthieu; Heckel, Gerald; Excoffier, Laurent (2014). Continental-Scale Footprint of Balancing and Positive Selection in a Small Rodent (Microtus arvalis). PLoS ONE, 9(11), e112332. Public Library of Science
Johne, Reimar; Dremsek, Paul; Reetz, Jochen; Heckel, Gerald; Hess, Michael; Ulrich, Rainer G. (2014). Hepeviridae: An expanding family of vertebrate viruses. Infection, genetics and evolution, 27, pp. 212-229. Elsevier 10.1016/j.meegid.2014.06.024
Lischer, Heidi; Excoffier, Laurent; Heckel, Gerald (2014). Ignoring heterozygous sites biases phylogenomic estimates of divergence times: implications for the evolutionary history of Microtus voles. Molecular Biology and Evolution, 31(4), pp. 817-831. Oxford University Press 10.1093/molbev/mst271
Schmidt, Sabrina; Essbauer, Sandra S.; Mayer-Scholl, Anne; Poppert, Sven; Schmidt-Chanasit, Jonas; Klempa, Boris; Henning, Klaus; Schares, Gereon; Groschup, Martin H.; Spitzenberger, Friederike; Richter, Dania; Heckel, Gerald; Ulrich, Rainer G. (2014). Multiple infections of rodents with zoonotic pathogens in Austria. Vector-Borne and Zoonotic Diseases, 14(7), pp. 467-475. Mary Ann Liebert 10.1089/vbz.2013.1504
Sheikh Ali, Hanan; Drewes, Stephan; Sadowska, Edyta T.; Mikowska, Magdalena; Groschup, Martin H.; Heckel, Gerald; Koteja, Pawel; Ulrich, Rainer G. (2014). First Molecular Evidence for Puumala Hantavirus in Poland. Viruses, 6(1), pp. 340-353. MDPI 10.3390/v6010340
Kittl, Sonja; Heckel, Gerald; Korczak, Bozena; Kuhnert, Peter (2013). Source attribution of human Campylobacter isolates by MLST and fla-typing and association of genotypes with quinolone resistance. PLoS ONE, 8(11), e81796. Public Library of Science 10.1371/journal.pone.0081796
Martinkova, Natália; Barnett, Ross; Cucchi, Thomas; Struchen, Rahel; Pascal, Marine; Pascal, Michel; Fischer, Martin C.; Higham, Thomas; Brace, Selina; Ho, Simon Y. W.; Quere, Jean-Pierre; O'Higgins, Paul; Excoffier, Laurent; Heckel, Gerald; Hoelzel, A. Rus; Dobney, Keith M.; Searle, Jeremy B. (2013). Divergent evolutionary processes associated with colonization of offshore islands. Molecular Ecology, 22(20), pp. 5205-5220. Wiley-Blackwell 10.1111/mec.12462
Liu, Yang; Keller, Irene; Heckel, Gerald (2013). Temporal genetic structure and relatedness in the Tufted Duck Aythya fuligula suggests limited kin association in winter. Ibis, 155(3), pp. 499-507. Wiley-Blackwell 10.1111/ibi.12059
Dong, Lu; Heckel, Gerald; Liang, Wei; Zhang, Yanyun (2013). Phylogeography of silver pheasant (Lophura nycthemera L.) across China: aggregate effects of refugia, introgression, and riverine barriers. Molecular Ecology, 22(12), pp. 3376-3390. Wiley-Blackwell 10.1111/mec.12315
White, Thomas A.; Perkins, Sarah E.; Heckel, Gerald; Searle, Jeremy B. (2013). Adaptive evolution during an ongoing range expansion: the invasive bank vole (Myodes glareolus) in Ireland. Molecular Ecology, 22(11), pp. 2971-2985. Wiley-Blackwell 10.1111/mec.12343
Kindler, Eveline; Trojnar, Eva; Heckel, Gerald; Otto, Peter H.; Johne, Reimar (2013). Analysis of rotavirus species diversity and evolution including the newly determined full-length genome sequences of rotavirus F and G. Infection, genetics and evolution, 14, pp. 58-67. Elsevier 10.1016/j.meegid.2012.11.015
Sutter, A.; Beysard, M.; Heckel, G. (2013). Sex-specific clines support incipient speciation in a common European mammal. Heredity, 110(4), pp. 398-404. Oliver and Boyd 10.1038/hdy.2012.124
Bastos-Silveira, C.; Santos, S.M.; Monarca, R.; Mathias Mda, L.; Heckel, G. (2012). Deep mitochondrial introgression and hybridization among ecologically divergent vole species. Molecular Ecology, 21(21), pp. 5309-5323. Oxford: Wiley-Blackwell 10.1111/mec.12018
Beysard, M.; Perrin, N.; Jaarola, M.; Heckel, G.; Vogel, P. (2012). Asymmetric and differential gene introgression at a contact zone between two highly divergent lineages of field voles (Microtus agrestis). Journal of Evolutionary Biology, 25(2), pp. 400-408. Basel: Wiley 10.1111/j.1420-9101.2011.02432.x
Johne, R.; Dremsek, P.; Kindler, E.; Schielke, A.; Plenge-Bönig, A.; Gregersen, H.; Wessels, U.; Schmidt, K.; Rietschel, W.; Groschup, M.H.; Guenther, S.; Heckel, G.; Ulrich, R.G. (2012). Rat hepatitis E virus: geographical clustering within Germany and serological detection in wild Norway rats (Rattus norvegicus). Infection, genetics and evolution, 12(5), pp. 947-956. Amsterdam: Elsevier 10.1016/j.meegid.2012.02.021
Kindler, E.; Arlettaz, R.; Heckel, G. (2012). Deep phylogeographic divergence and cytonuclear discordance in the grasshopper Oedaleus decorus. Molecular phylogenetics and evolution, 65(2), pp. 695-704. San Diego, Calif.: Elsevier 10.1016/j.ympev.2012.07.025
Kotrschal, A.; Heckel, G.; Bonfils, D.; Taborsky, B. (2012). Life-stage specific environments in a cichlid fish: implications for inducible maternal effects. Evolutionary ecology, 26(1), pp. 123-137. London: Springer Netherlands 10.1007/s10682-011-9495-5
Liu, Y.; Keller, I.; Heckel, G. (2012). Breeding site fidelity and winter admixture in a long-distance migrant, the tufted duck (Aythya fuligula). Heredity, 109(2), pp. 108-116. London: Oliver and Boyd 10.1038/hdy.2012.19
Schlegel, M.; Kindler, E.; Essbauer, S.S.; Wolf, R.; Thiel, J.; Groschup, M.H.; Heckel, G.; Oehme, R.M.; Ulrich, R.G. (2012). Tula Virus Infections in the Eurasian Water Vole in Central Europe. Vector-Borne and Zoonotic Diseases, 12(6), pp. 503-513. Larchmont, N.Y.: Mary Ann Liebert 10.1089/vbz.2011.0784
White, TA; Lundy, MG; Montgomery, WI; Montgomery, S; Perkins, SE; Lawton, C; Meehan, JM; Hayden, TJ; Heckel, G; Reid N Searle, JB (2012). Range expansion in an invasive small mammal: influence of life-history and habitat quality. Biological invasions, 14(10), pp. 2203-2215. Dordrecht: Springer Netherlands 10.1007/s10530-012-0225-x
Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x
Hahne, Joerg; Jenkins, Tania; Halle, Stefan; Heckel, Gerald (2011). Establishment success and resulting fitness consequences for vole dispersers. Oikos, 120(1), pp. 95-105. Oxford: Blackwell 10.1111/j.1600-0706.2010.18589.x
Johne, R.; Heckel, G.; Plenge-Bonig, A.; Kindler, E.; Maresch, C.; Reetz, J.; Schielke, A.; Ulrich, R.G. (2011). Complete genome of a novel hepatitis E virus genotype in Norway rat, Germany [response]. Emerging infectious diseases, 17, pp. 1982-1983. Atlanta, Ga.: U.S. National Center for Infectious Diseases
Liu, Y.; Keller, I.; Heckel, G. (2011). Range-wide genetic population structure in common pochard (Aythya ferina) a potentially important vector of highly pathogenic avian influenza viruses. Ecology, 1(4), pp. 529-545. Washington, D.C.: Ecological Society of America 10.1002/ece3.46
Mertens, M.; Kindler, E.; Emmerich, P.; Esser, J.; Wagner-Wiening, C.; Wolfel, R.; Petraityte-Burneikiene, R.; Schmidt-Chanasit, J.; Zvirbliene, A.; Groschup, M.H.; Dobler, G.; Pfeffer, M.; Heckel, G.; Ulrich, R.G.; Essbauer, S.S. (2011). Phylogenetic analysis of Puumala virus subtype Bavaria, characterization and diagnostic use of its recombinant nucleocapsid protein. Virus genes, 43(2), pp. 177-191. Boston, Mass.: Nijhoff 10.1007/s11262-011-0620-x
Stovicek, O.; Cizkova, D.; Liu, Y.; Alrecht, T.; Heckel, G.; Vyscocilova, M.; Kresinger, J. (2011). Development of microsatellite markers for a diving duck, the common pochard (Aythya ferina). Conservation genetics resources, 3(3), pp. 573-576. Dordrecht: Springer 10.1007/s12686-011-9407-6
Halami, Mohammad Yahya; Dorrestein, Gerry M.; Couteel, Peter; Heckel, Gerald; Muller, Hermann; Johne, Reimar (2010). Whole genome characterization of a novel polyomavirus detected in fatally diseased canary birds. Journal of general virology, 91(12), pp. 3016-3022. Reading: Society for General Microbiology 10.1099/vir.0.023549-0
Johne, Reimar; Heckel, Gerald; Plenge-Bönig, Anita; Kindler, Eveline; Maresch, Christina; Reetz, Jochen; Schielke, Anika; Ulrich, Rainer G. (2010). Novel hepatitis E virus genotype in Norway rats, Germany. Emerging infectious diseases, 16(9), pp. 1452-1455. Atlanta, Ga.: U.S. National Center for Infectious Diseases 10.3201/eid1609.100444
Schmidt-Chanasit, Jonas; Essbauer, Sandra; Petraityte, Rasa; Yoshimatsu, Kumiko; Tackmann, Kirsten; Conraths, Franz J.; Sasnauskas, Kestutis; Arikawa, Jiro; Thomas, Astrid; Pfeffer, Martin; Scharninghausen, Jerrold J.; Splettstoesser, Wolf; Wenk, Matthias; Heckel, Gerald; Ulrich, Rainer G. (2010). Extensive host sharing of Central European Tula virus. Journal of virology, 84(1), pp. 459-474. Baltimore: American Society for Microbiology 10.1128/JVI.01226-09
Braaker, Sonja; Heckel, Gerald (2009). Transalpine colonisation and partial phylogeographic erosion by dispersal in the common vole Microtus arvalis. Molecular Ecology, 18(11), pp. 2518-2531. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2009.04189.x
Soland-Reckeweg, Gabriele; Heckel, Gerald; Neumann, Peter; Fluri, Peter; Excoffier, Laurent (2009). Gene flow in admixed populations and implications for the conservation of the Western honeybee, Apis mellifera. Journal of insect conservation, 13(3), pp. 317-328. London: Springer Netherlands 10.1007/s10841-008-9175-0
Ulrich, RG; Heckel, Gerald; Pelz, HJ; Wieler, LH; Nordhoff, M.; Dobler, G.; Freise, J.; Matuschka, FR; Jacob, J.; Schmidt-Chanasit, J.; Gerstengarbe, FW; Jaekel, T.; Suess, J.; Ehlers, B.; Nitsche, A.; Kallies, R.; Johne, R.; Guenther, S.; Henning, K.; Grunow, R.; ... (2009). Nagetiere und Nagetierassoziierte Krankheitserreger (Rodents and rodent associated disease pathogen). Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz, 52(3), pp. 352-369. Heidelberg: Springer-Medizin-Verlag 10.1007/s00103-009-0798-4
Heckel, G.; Fink, S. (2008). Evolution of the arginine vasopressin 1 a receptor and implications for mammalian social behavior. In: Landgraf, Rainer; Neumann, Inga (eds.) Advances in vasopressin and oxytocin - from gene to behavior 170 (pp. 321-330). Amsterdam: Elsevier 10.1016/S0079-6123(08)00426-3
Ruedi, Manuel; Walter, Simon; Fischer, Martin C.; Scaravelli, Dino; Excoffier, Laurent; Heckel, Gerald (2008). Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology, 17(7), pp. 1801-1814. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03702.x
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