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Aeschbacher, Simon

Pouyet, Fanny; Aeschbacher, Simon; Thiéry, Alexandre Benoit Xavier; Excoffier, Laurent (2018). Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences. eLife, 7, pp. 1-21. eLife Sciences Publications 10.7554/eLife.36317

Aeschbacher, Simon; Selby, Jessica P.; Willis, John H.; Coop, Graham (2017). Population-genomic inference of the strength and timing of selection against gene flow. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 114(27), pp. 7061-7066. National Academy of Sciences NAS 10.1073/pnas.1616755114

Alves, Isabel

Alves, Isabel; Arenas Busto, Miguel; Currat, Mathias; Sramkova Hanulova, Anna; Martins Conde e Sousa, Vitor; Ray, Nicolas; Excoffier, Laurent (2016). Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution, 33(4), pp. 946-958. Oxford University Press 10.1093/molbev/msv332

Alves, Isabel; Srámková Hanulová, A.; Foll, Matthieu; Excoffier, Laurent (2012). Genomic Data Reveal a Complex Making of Humans. PLoS genetics, 8(7), e1002837. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1002837

Amstutz, Ursula

Giger, Thomas; Excoffier, Laurent; Amstutz, Ursula; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Kelso, Janet; Largiadèr, Carlo R (2008). Population transcriptomics of life-history variation in the genus Salmo. Molecular Ecology, 17(13), pp. 3095-3108. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03820.x

Giger, Thomas; Amstutz, Ursula; Excoffier, Laurent; Champigneulle, Alexis; Day, Philip; Powell, Richard; Largiadèr, Carlo (2007). The genetic basis of smoltification: Functional genomics tools facilitate the search for the needle in the haystack. In: Harris, Graeme; Millner, Nigel (eds.) Sea Trout: Biology Conservation and Management (pp. 183-195). Chichester: John Wiley & Sons 10.1002/9780470996027.ch13

Arenas Busto, Miguel

Alves, Isabel; Arenas Busto, Miguel; Currat, Mathias; Sramkova Hanulova, Anna; Martins Conde e Sousa, Vitor; Ray, Nicolas; Excoffier, Laurent (2016). Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution, 33(4), pp. 946-958. Oxford University Press 10.1093/molbev/msv332

Mona, Stefano; Ray, Nicolas; Arenas Busto, Miguel; Excoffier, Laurent (2014). Genetic consequences of habitat fragmentation during a range expansion. Heredity, 112(3), pp. 291-299. Oliver and Boyd 10.1038/hdy.2013.105

Arenas Busto, Miguel; Mona, Stefano; Trochet, Audrey; Sramkova Hanulova, Anna; Currat, Mathias; Ray, Nicolas; Chikhi, Lounes; Rasteiro, Rita; Schmeller, Dirk S.; Excoffier, Laurent (2014). The scaling of genetic diversity in a changing and fragmented world. In: Henle, Klaus; Potts, Simon; Kunin, William; Matsinos, Yiannis; Simila, Jukka; Pantis, John; Grobelnik, Vesna; Penev, Lyubomir; Settele, Josef (eds.) Scaling in Ecology and Biodiversity Conservation. Advanced Books (pp. 55-60). Sofia, Bulgaria: Pensoft Publishers

Arenas, Miguel; François, Olivier; Currat, Mathias; Ray, Nicolas; Excoffier, Laurent (2013). Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients. Molecular Biology and Evolution, 30(1), pp. 57-61. Oxford University Press 10.1093/molbev/mss203

Arenas, M.; Ray, N.; Currat, M.; Excoffier, L. (2012). Consequences of Range Contractions and Range Shifts on Molecular Diversity. Molecular Biology and Evolution, 29(1), pp. 207-218. Oxford: Oxford University Press 10.1093/molbev/msr187

Arlettaz, Raphaël

Schmid, Sarah; Neuenschwander, Samuel; Pitteloud, Camille; Heckel, Gerald; Pajkovic, Mila; Arlettaz, Raphaël; Alvarez, Nadir (2018). Spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus revealed by museum genomics. Ecology and evolution, 8(3), pp. 1480-1495. John Wiley & Sons, Inc. 10.1002/ece3.3699

Resano Mayor, Jaime; Fernández-Martín, Àngel; Hernández-Gómez, Sergio; Toranzo, Ignasi; España, Antonio; Gil, Juan Antonio; de Gabriel, Miguel; Roa-Álvarez, Isabel; Strinella, Eliseo; Hobson, Keith A.; Heckel, Gerald; Arlettaz, Raphaël (2017). Integrating genetic and stable isotope analyses to infer the population structure of the White-winged Snowfinch Montifringilla nivalis in Western Europe. Journal of ornithology, 158(2), pp. 395-405. Springer 10.1007/s10336-016-1413-8

Kindler, E.; Arlettaz, R.; Heckel, G. (2012). Deep phylogeographic divergence and cytonuclear discordance in the grasshopper Oedaleus decorus. Molecular phylogenetics and evolution, 65(2), pp. 695-704. San Diego, Calif.: Elsevier 10.1016/j.ympev.2012.07.025

Avila Rojas, Dorita

Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076

Balloux, François

Balloux, François (2001). EASYPOP (Version 1.7): A Computer Program for Population Genetics Simulations. Journal of heredity, 92(3), pp. 301-302. Oxford University Press 10.1093/jhered/92.3.301

Bank, Claudia

Blanckaert, Alexandre; Sriram, Vedanth; Bank, Claudia (2023). In search of the Goldilocks zone for hybrid speciation II: hard times for hybrid speciation? Evolution, 77(10), pp. 2162-2172. Wiley 10.1093/evolut/qpad125

Marrec, Loïc; Bank, Claudia; Bertrand, Thibault (2023). Solving the stochastic dynamics of population growth. Ecology and evolution, 13(8), pp. 1-20. John Wiley & Sons, Inc. 10.1002/ece3.10295

Li, Juan; Amado, André; Bank, Claudia (2023). Rapid adaptation of recombining populations on tunable fitness landscapes. (In Press). Molecular ecology Wiley 10.1111/mec.16900

Amado, André; Li, Juan; Bank, Claudia (2023). STUN: forward-time simulation on TUnable fitNess landscapes in recombining populations. Bioinformatics advances, 3(1), vbad164. Oxford University Press 10.1093/bioadv/vbad164

Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644

Beysard, Mathias

Beysard, Mathias; Krebs-Wheaton, Rebecca; Heckel, Gerald (2015). Tracing reinforcement through asymmetrical partner preference in the European common vole Microtus arvalis. BMC evolutionary biology, 15(1) BioMed Central 10.1186/s12862-015-0455-5

Beysard, Mathias; Heckel, Gerald (2014). Structure and dynamics of hybrid zones at different stages of speciation in the common vole (Microtus arvalis). Molecular Ecology, 23(3), pp. 673-687. Wiley-Blackwell 10.1111/mec.12613

Beysard, Mathias (2014). Speciation and hybridization in the common vole (Microtus arvalis). (Dissertation, Institute of Ecology and Evolution, Faculty of Science)

Sutter, A.; Beysard, M.; Heckel, G. (2013). Sex-specific clines support incipient speciation in a common European mammal. Heredity, 110(4), pp. 398-404. Oliver and Boyd 10.1038/hdy.2012.124

Bosshard, Lars

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2020). Dissection of the mutation accumulation process during bacterial range expansions. BMC Genomics, 21(1) BioMed Central 10.1186/s12864-020-6676-z

Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2019). Mutational and Selective Processes Involved in Evolution during Bacterial Range Expansions. Molecular Biology and Evolution, 36(10), pp. 2313-2327. Oxford University Press 10.1093/molbev/msz148

Bosshard, Lars; Dupanloup, Isabelle; Tenaillon, Olivier; Bruggmann, Rémy; Ackermann, Martin; Peischl, Stephan; Excoffier, Laurent (2017). Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics, 207(2), pp. 669-684. Genetics Society of America 10.1534/genetics.117.300144

Braaker, Sonja

Braaker, Sonja; Heckel, Gerald (2009). Transalpine colonisation and partial phylogeographic erosion by dispersal in the common vole Microtus arvalis. Molecular Ecology, 18(11), pp. 2518-2531. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2009.04189.x

Bruggmann, Rémy

Meier, Joana; McGee, Matthew D; Marques, David A; Mwaiko, Salome; Kishe, Mary; Wandera, Sylvester; Neumann, Dirk; Mrosso, Hilary; Chapman, Lauren J; Chapman, Colin A; Kaufman, Les; Taabu-Munyaho, Anthony; Wagner, Catherine E; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2023). Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science, 381(6665), eade2833. American Association for the Advancement of Science 10.1126/science.ade2833

Mc Gee, Matthew D.; Borstein, Samuel R.; Meier, Joana I.; Marques, David A.; Mwaiko, Salome; Taabu, Anthony; Kishe, Mary A.; O’Meara, Brian; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2020). The ecological and genomic basis of explosive adaptive radiation. Nature, 586(7827), pp. 75-79. Springer Nature 10.1038/s41586-020-2652-7

Bosshard, Lars; Dupanloup, Isabelle; Tenaillon, Olivier; Bruggmann, Rémy; Ackermann, Martin; Peischl, Stephan; Excoffier, Laurent (2017). Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics, 207(2), pp. 669-684. Genetics Society of America 10.1534/genetics.117.300144

Currat, Mathias

Arenas, Miguel; François, Olivier; Currat, Mathias; Ray, Nicolas; Excoffier, Laurent (2013). Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients. Molecular Biology and Evolution, 30(1), pp. 57-61. Oxford University Press 10.1093/molbev/mss203

Cutivet, Emilie

Daub, Joséphine; Hofer, Tamara; Cutivet, Emilie; Duperret, Isabelle; Quintana-Murci, L; Robinson-Rechavi, M; Excoffier, Laurent (2013). Evidence for Polygenic Adaptation to Pathogens in the Human Genome. Molecular Biology and Evolution, 30(7), pp. 1544-1558. Oxford University Press 10.1093/molbev/mst080

Da Silva Oliveira, Sandra Raquel

Oliveira, Sandra; Fehn, Anne-Maria; Amorim, Beatriz; Stoneking, Mark; Rocha, Jorge (2023). Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry. Science Advances, 9(38), eadh3822. American Association for the Advancement of Science 10.1126/sciadv.adh3822

Stoneking, Mark; Arias, Leonardo; Liu, Dang; Oliveira, Sandra; Pugach, Irina; Rodriguez, Jae Joseph Russell B (2023). Genomic perspectives on human dispersals during the Holocene. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 120(4), e2209475119. National Academy of Sciences NAS 10.1073/pnas.2209475119

Daub, Joséphine

Daub, Joséphine; Moretti, S.; Davydov, I.I.; Excoffier, Laurent; Robinson-Rechavi, M. (2017). Detection of Pathways Affected by Positive Selection in Primate Lineages Ancestral to Humans. Molecular Biology and Evolution, 34(6), pp. 1391-1402. Oxford University Press 10.1093/molbev/msx083

Amorim, Carlos Eduardo G.; Daub, Joséphine; Salzano, Francisco M.; Foll, Matthieu; Excoffier, Laurent (2015). Detection of convergent genome-wide signals of adaptation to tropical forests in humans. PLoS ONE, 10(4), pp. 1-19. Public Library of Science 10.1371/journal.pone.0121557

Daub, Joséphine; Duperret, Isabelle; Robinson-Rechavi, Marc; Excoffier, Laurent (2015). Inference of evolutionary forces acting on human biological pathways. Genome biology and evolution, 7(6), pp. 1546-1558. Oxford University Press 10.1093/gbe/evv083

Foll, Matthieu; Gaggiotti, Oscar; Daub, Joséphine; Vatsiou, Alexandra; Excoffier, Laurent (2014). Widespread Signals of Convergent Adaptation to High Altitude in Asia and America. American journal of human genetics, 95(4), pp. 394-407. Cell Press 10.1016/j.ajhg.2014.09.002

Daub, Joséphine; Hofer, Tamara; Cutivet, Emilie; Duperret, Isabelle; Quintana-Murci, L; Robinson-Rechavi, M; Excoffier, Laurent (2013). Evidence for Polygenic Adaptation to Pathogens in the Human Genome. Molecular Biology and Evolution, 30(7), pp. 1544-1558. Oxford University Press 10.1093/molbev/mst080

Duperret, Isabelle

Sikora, Martin; Seguin-Orlando, Andaine; Martins Conde e Sousa, Vitor; Albrechtsen, Anders; Korneliussen, Thorfinn; Ko, Amy; Rasmussen, Simon; Dupanloup, Isabelle; Nigst, Philip R.; Bosch, Marjolein D.; Renaud, Gabriel; Allentoft, Morten E.; Margaryan, Ashot; Vasilyev, Sergey V.; Veselovskaya, Elizaveta V.; Borutskaya, Svetlana B.; Deviese, Thibaut; Comeskey, Dan; Higham, Tom; Manica, Andrea; ... (2017). Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers. Science, 358(6363), pp. 659-662. American Association for the Advancement of Science 10.1126/science.aao1807

Bosshard, Lars; Dupanloup, Isabelle; Tenaillon, Olivier; Bruggmann, Rémy; Ackermann, Martin; Peischl, Stephan; Excoffier, Laurent (2017). Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics, 207(2), pp. 669-684. Genetics Society of America 10.1534/genetics.117.300144

de Manuel, Marc; Kuhlwilm, Martin; Frandsen, Peter; Martins Conde e Sousa, Vitor; Desai, Tariq; Prado-Martinez, Javier; Hernandez-Rodriguez, Jessica; Duperret, Isabelle; Lao, Oscar; Hallast, Pille; Schmidt, Joshua M.; Herdia-Genestar, José María; Benazzo, Andrea; Barbujani, Guido; Peter, Benjamin M.; Kuderna, Lukas F. K.; Casals, Ferran; Angedakin, Samuel; Arandjelovic, Mimi; Boesch, Christophe; ... (2016). Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science, 354(6311), pp. 477-481. American Association for the Advancement of Science 10.1126/science.aag2602

Henn, Brenna M.; Botigué, Laura R.; Peischl, Stephan; Duperret, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Musharoff, Shaila; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2016). Distance from Sub-Saharan Africa Predicts Mutational Load in Diverse Human Genomes. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 113(4), E440-E449. National Academy of Sciences NAS 10.1073/pnas.1510805112

Botigué, Laura R.; Henn, Brenna M.; Peischl, Stephan; Dupanloup, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Yee, M.C.; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2015). The Out of Africa expansion affected accumulation of deleterious alleles in human genomes. American Journal of Physical Anthropology, 156(S60), pp. 90-91. Wiley

Daub, Joséphine; Duperret, Isabelle; Robinson-Rechavi, Marc; Excoffier, Laurent (2015). Inference of evolutionary forces acting on human biological pathways. Genome biology and evolution, 7(6), pp. 1546-1558. Oxford University Press 10.1093/gbe/evv083

Schubert, Mikkel; Jónsson, Hákon; Chang, Dan; Der Sarkissian, Clio; Ermini, Luca; Ginolhac, Aurélien; Albrechtsen, Anders; Dupanloup, Isabelle; Foucal, Adrien; Petersen, Bent; Fumagalli, Matteo; Raghavan, Maanasa; Seguin-Orlando, Andaine; Korneliussen, Thorfinn S.; Velazquez, Amhed M. V.; Stenderup, Jesper; Hoover, Cindi A.; Rubin, Carl-Johan; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; ... (2014). Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(52), E5661-E5669. National Academy of Sciences NAS 10.1073/pnas.1416991111

Excoffier, Laurent; Dupanloup, Isabelle; Huerta-Sánchez, Emilia; Sousa, Vitor C.; Foll, Matthieu (2013). Robust demographic inference from genomic and SNP data. PLoS genetics, 9(10), e1003905. Public Library of Science 10.1371/journal.pgen.1003905

Daub, Joséphine; Hofer, Tamara; Cutivet, Emilie; Duperret, Isabelle; Quintana-Murci, L; Robinson-Rechavi, M; Excoffier, Laurent (2013). Evidence for Polygenic Adaptation to Pathogens in the Human Genome. Molecular Biology and Evolution, 30(7), pp. 1544-1558. Oxford University Press 10.1093/molbev/mst080

Peischl, Stephan; Duperret, Isabelle; Kirkpatrick, Mark; Excoffier, Laurent (2013). On the accumulation of deleterious mutations during range expansions. Molecular Ecology, 22(24), pp. 5972-5982. Wiley-Blackwell 10.1111/mec.12524

Egger, Matthias

Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076

Excoffier, Laurent

Marchi, Nina; Kapopoulou, Adamantia; Excoffier, Laurent (2024). Demogenomic inference from spatially and temporally heterogeneous samples. Molecular ecology resources, 24(1), pp. 1-11. Wiley 10.1111/1755-0998.13877

Meier, Joana; McGee, Matthew D; Marques, David A; Mwaiko, Salome; Kishe, Mary; Wandera, Sylvester; Neumann, Dirk; Mrosso, Hilary; Chapman, Lauren J; Chapman, Colin A; Kaufman, Les; Taabu-Munyaho, Anthony; Wagner, Catherine E; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2023). Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science, 381(6665), eade2833. American Association for the Advancement of Science 10.1126/science.ade2833

Schlichta, Flávia; Peischl, Stephan; Excoffier, Laurent (2022). The impact of genetic surfing on neutral genomic diversity. Molecular Biology and Evolution, 39(11) Oxford University Press 10.1093/molbev/msac249

Johri, Parul; Aquadro, Charles F.; Beaumont, Mark; Charlesworth, Brian; Excoffier, Laurent; Eyre-Walker, Adam; Keightley, Peter D.; Lynch, Michael; McVean, Gil; Payseur, Bret A.; Pfeifer, Susanne P.; Stephan, Wolfgang; Jensen, Jeffrey D. (2022). Recommendations for improving statistical inference in population genomics. PLoS biology, 20(5), pp. 1-23. Public Library of Science 10.1371/journal.pbio.3001669

Moinet, Antoine; Schlichta, Flavia; Peischl, Stephan; Excoffier, Laurent (2022). Strong neutral sweeps occurring during a population contraction. Genetics, 220(4) Oxford University Press 10.1093/genetics/iyac021

Marchi, Nina; Winkelbach, Laura; Schulz, Ilektra; Brami, Maxime; Hofmanová, Zuzana; Blöcher, Jens; Reyna-Blanco, Carlos S.; Diekmann, Yoan; Thiéry, Alexandre; Kapopoulou, Adamandia; Link, Vivian; Piuz, Valérie; Kreutzer, Susanne; Figarska, Sylwia M.; Ganiatsou, Elissavet; Pukaj, Albert; Struck, Travis J.; Gutenkunst, Ryan N.; Karul, Necmi; Gerritsen, Fokke; ... (2022). The genomic origins of the world’s first farmers. Cell, 185(11), 1842-1859.e18. Cell Press 10.1016/j.cell.2022.04.008

Moinet, Antoine; Peischl, Stephan; Excoffier, Laurent (25 August 2021). Strong neutral sweeps occurring during a population contraction (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.25.457712

Foote, Andrew D.; Gilbert, M. Thomas P.; Gopalakrishnan, Shyam; Louis, Marie; Martin, Michael D.; Morin, Phillip A.; Nykänen, Milaja; Scharff-Olsen, Camilla Hjorth; Excoffier, Laurent (21 August 2021). Evidence of long-term purging of mutation load in killer whale genomes (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.21.457186

Foote, Andrew D.; Hooper, Rebecca; Alexander, Alana; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Excoffier, Laurent; Fordyce Martin, Sarah L.; Forney, Karin A.; Gerrodette, Tim; Gilbert, M. Thomas P.; Guinet, Christophe; ... (2021). Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology, 30(23), pp. 6162-6177. Wiley-Blackwell 10.1111/mec.16137

Currat, Mathias; Quilodrán, Claudio S.; Excoffier, Laurent (2021). Simulations of Human Dispersal and Genetic Diversity. In: Saitou, Naruya (ed.) Evolution of the Human Genome II. Evolutionary Studies (pp. 231-256). Tokyo: Springer Nature 10.1007/978-4-431-56904-6_12

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Choin, Jeremy; Mendoza-Revilla, Javier; Arauna, Lara R.; Cuadros-Espinoza, Sebastian; Cassar, Olivier; Larena, Maximilian; Min-Shan Ko, Albert; Harmant, Christine; Laurent, Romain; Verdu, Paul; Laval, Guillaume; Boland, Anne; Olaso, Robert; Deleuze, Jean-François; Valentin, Frédérique; Ko, Ying-Chin; Jakobsson, Mattias; Gessain, Antoine; Excoffier, Laurent; Stoneking, Mark; ... (2021). Genomic insights into population history and biological adaptation in Oceania. Nature, 592(7855), pp. 583-589. Springer Nature 10.1038/s41586-021-03236-5

Marchi, Nina; Schlichta, Flávia; Excoffier, Laurent (2021). Demographic inference. Current Biology, 31(6), R276-R279. Cell Press 10.1016/j.cub.2021.01.053

Armstrong, Ellie E.; Khan, Anubhab; Taylor, Ryan W.; Gouy, Alexandre; Greenbaum, Gili; Thiéry, Alexandre; Kang, Jonathan T.; Redondo, Sergio A.; Prost, Stefan; Barsh, Gregory; Kaelin, Christopher; Phalke, Sameer; Chugani, Anup; Gilbert, Martin; Miquelle, Dale; Zachariah, Arun; Borthakur, Udayan; Reddy, Anuradha; Louis, Edward; Ryder, Oliver A.; ... (2021). Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection. Molecular Biology and Evolution, 38(6), pp. 2366-2379. Oxford University Press 10.1093/molbev/msab032

Johri, Parul; Riall, Kellen; Becher, Hannes; Excoffier, Laurent; Charlesworth, Brian; Jensen, Jeffrey D. (2021). The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects. Molecular Biology and Evolution, 38(7), pp. 2986-3003. Oxford University Press 10.1093/molbev/msab050

Marques, David A.; Lucek, Kay; Sousa, Vitor C.; Excoffier, Laurent; Seehausen, Ole (2021). Reply to "Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin". Nature Communications, 12(1), p. 2807. Springer Nature 10.1038/s41467-021-23096-x

Excoffier, Laurent; Marchi, Nina; Marques, David Alexander; Matthey-Doret, Remi; Gouy, Alexandre; Sousa, Vitor C. (2021). fastsimcoal2 : demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), pp. 4882-4885. Oxford University Press 10.1093/bioinformatics/btab468

Marchi, Nina; Excoffier, Laurent (2020). Gene flow as a simple cause for an excess of high-frequency-derived alleles. Evolutionary applications, 13(9), pp. 2254-2263. Wiley 10.1111/eva.12998

Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2020). Dissection of the mutation accumulation process during bacterial range expansions. BMC Genomics, 21(1) BioMed Central 10.1186/s12864-020-6676-z

Gouy, Alexandre; Excoffier, Laurent (2020). Polygenic Patterns of Adaptive Introgression in Modern Humans Are Mainly Shaped by Response to Pathogens. Molecular Biology and Evolution, 37(5), pp. 1420-1433. Oxford University Press 10.1093/molbev/msz306

Gilbert, Kimberly J.; Pouyet, Fanny; Excoffier, Laurent; Peischl, Stephan (2020). Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination. Current Biology, 30(1), pp. 101-107. Cell Press 10.1016/j.cub.2019.11.063

Mc Gee, Matthew D.; Borstein, Samuel R.; Meier, Joana I.; Marques, David A.; Mwaiko, Salome; Taabu, Anthony; Kishe, Mary A.; O’Meara, Brian; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2020). The ecological and genomic basis of explosive adaptive radiation. Nature, 586(7827), pp. 75-79. Springer Nature 10.1038/s41586-020-2652-7

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Arenas, Miguel; François, Olivier; Currat, Mathias; Ray, Nicolas; Excoffier, Laurent (2013). Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients. Molecular Biology and Evolution, 30(1), pp. 57-61. Oxford University Press 10.1093/molbev/mss203

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Kormann, U.; Gugerli, F.; Ray, N.; Excoffier, L.; Bollmann, K. (2012). Parsimony-based pedigree analysis and individual-based landscape genetics suggest topography to restrict dispersal and connectivity in the endangered capercaillie. Biological conservation, 152, pp. 241-252. Barking, UK: Elsevier 10.1016/j.biocon.2012.04.011

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Pimenoff, V.N.; Laval, G.; Comas, D.; Palo, J.U.; Gut, I.; Cann, H.; Excoffier, L.; Sajantila, A. (2012). Similarity in recombination rate and linkage disequilibrium at CYP2C and CYP2D cytochrome P450 gene regions among Europeans indicates signs of selection and no advantage of using tagSNPs in population isolates. Pharmacogenetics and genomics, 22(12), pp. 846-857. London: Lippincott Williams & Wilkins 10.1097/FPC.0b013e32835a3a6d

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Widmer, I.; dal Grande, F.; Excoffier, L.; Holderegger, R.; Keller, C.; Mikryukov, V.S.; Scheidegger, C. (2012). European phylogeography of the epiphytic lichen fungus Lobaria pulmonaria and its green algal symbiont. Molecular Ecology, 21(23), pp. 5827-5844. Oxford: Wiley-Blackwell 10.1111/mec.12051

Bittner, David; Cossins, Andrew R; Segner, Helmut; Excoffier, Laurent; Largiadèr, Carlo R (2011). Identification of candidate genes and physiological pathways involved in gonad deformation in whitefish (Coregonus spp.) from Lake Thun, Switzerland. International journal of environmental research and public health, 8(7), pp. 2706-33. Basel: Molecular Diversity Preservation International MDPI 10.3390/ijerph8072706

Currat, Mathias; Excoffier, Laurent (2011). Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 108(37), pp. 15129-15134. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.1107450108

Excoffier, Laurent; Foll, Matthieu (2011). fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics, 27(9), pp. 1332-1334. Oxford: Oxford University Press 10.1093/bioinformatics/btr124

Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x

Laurent, S.; Werzner, A.; Excoffier, L.; Stephan, W. (2011). Approximate Bayesian analysis of Drosophila melanogaster polymorphism data reveals a recent colonization of Southeast Asia. Molecular Biology and Evolution, 28(7), pp. 2041-2051. Oxford: Oxford University Press 10.1093/molbev/msr031

Moreau, Claudia; Bhérer, Claude; Vézina, Hélène; Jomphe, Michèle; Labuda, Damian; Excoffier, Laurent (2011). Deep Human Genealogies Reveal a Selective Advantage to Be on an Expanding Wave Front. Science, 334(6059), pp. 1148-1150. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1212880

Bittner, D; Excoffier, L; Largiadèr, C R (2010). Patterns of morphological changes and hybridization between sympatric whitefish morphs (Coregonus spp.) in a Swiss lake: a role for eutrophication? Molecular Ecology, 19(10), pp. 2152-67. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04623.x

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Estoup, Arnaud; Baird, Stuart J.E.; Ray, Nicolas; Currat, Mathias; Cornuet, Jean-Marie; Santos, Filipe; Beaumont, Mark A.; Excoffier, Laurent (2010). Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus. Molecular ecology resources, 10(5), pp. 886-901. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02882.x

Excoffier, Laurent; Lischer, Heidi E.L. (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular ecology resources, 10(3), pp. 564-567. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02847.x

Fink, Sabine; Fischer, Martin C.; Excoffier, Laurent; Heckel, Gerald (2010). Genomic scans support repetitive continental colonization events during the rapid radiation of voles (Rodentia: Microtus): the utility of AFLPs versus mitochondrial and nuclear sequence markers. Systematic biology, 59(5), pp. 548-572. Cary, N.C.: Oxford University Press 10.1093/sysbio/syq042

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Peter, Benjamin P.; Wegmann, Daniel; Excoffier, Laurent (2010). Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Molecular Ecology, 19(21), pp. 4648-4660. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04783.x

Ray, Nicolas; Currat, Mathias; Foll, Matthieu; Excoffier, Laurent (2010). SPLATCHE2: a spatially-explicit simulation framework for complex demography, genetic admixture and recombination. Bioinformatics, 26(23), pp. 2993-2994. Oxford: Oxford University Press 10.1093/bioinformatics/btq579

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Ray, Nicolas; Wegmann, Daniel; Fagundes, Nelson J.R.; Wang, S.; Ruiz-Linares, Andres; Excoffier, Laurent (2010). A statistical evaluation of models for the initial settlement of the American continent emphasizes the importance of gene flow with Asia. Molecular Biology and Evolution, 27(2), pp. 337-345. Oxford: Oxford University Press 10.1093/molbev/msp238

Wegmann, Daniel; Excoffier, Laurent (2010). Bayesian Inference of the Demographic History of Chimpanzees. Molecular Biology and Evolution, 27(6), pp. 1425-1435. Oxford: Oxford University Press 10.1093/molbev/msq028

Wegmann, Daniel; Leuenberger, Christoph; Neuenschwander, Samuel; Excoffier, Laurent (2010). ABCtoolbox: a versatile toolkit for approximate Bayesian computations. BMC bioinformatics, 11(1), p. 116. London: BioMed Central 10.1186/1471-2105-11-116

Yang, Ning Ning; Mazières, Stephane; Bravi, Claudio; Ray, Nicolas; Wang, Sijia; Burley, Mari-Wyn; Bedoya, Gabriel; Rojas, Winston; Parra, Maria V.; Molina, Julio A.; Gallo, Carla; Poletti, Giovanni; Hill, Kim; Hurtado, Ana M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; Klitz, William; Barrantes, Ramiro; Llop, Elena; Rothhammer, Francisco; ... (2010). Contrasting Patterns of Nuclear and mtDNA Diversity in Native American Populations. Annals of human genetics, 74(6), pp. 525-538. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2010.00608.x

Excoffier, Laurent; Foll, Matthieu; Petit, Rémy J. (2009). Genetic Consequences of Range Expansions. Annual review of ecology, evolution, and systematics, 40(1), pp. 481-501. Palo Alto, Calif.: Annual Reviews Inc. 10.1146/annurev.ecolsys.39.110707.173414

Excoffier, Laurent; Hofer, Tamara; Foll, Matthieu (2009). Detecting loci under selection in a hierarchically structured population. Heredity, 103(4), pp. 285-298. London: Oliver and Boyd 10.1038/hdy.2009.74

Hofer, Tamara; Ray, Nicolas; Wegmann, Daniel; Excoffier, Laurent (2009). Large allele frequency differences between human continental groups are more likely to have occurred by drift during range expansions than by selection. Annals of human genetics, 73(Part 1), pp. 95-108. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2008.00489.x

Makrythanasis, Periklis; Kapranov, Philipp; Bartoloni, Lucia; Reymond, Alexandre; Deutsch, Samuel; Guigo, Roderic; Denoeud, France; Drenkow, Jorg; Rossier, Colette; Ariani, Francesca; Capra, Valeria; Excoffier, Laurent; Renieri, Alessandra; Gingeras, Thomas R.; Antonarakis, Stylianos E. (2009). Variation in Novel Exons (RACEfrags) of the MECP2 Gene in Rett Syndrome Patients and Controls. Human mutation, 30(9), E866 - E879. Hoboken, N.J.: Wiley-Blackwell 10.1002/humu.21073

Petit, Rémy J.; Excoffier, Laurent (2009). Gene flow and species delimitation. Trends in ecology & evolution, 24(7), pp. 386-393. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2009.02.011

Poloni, Estella S.; Naciri, Yamama; Bucho, Rute; Niba, Régine; Kervaire, Barbara; Excoffier, Laurent; Langaney, André; Sanchez-Mazas, Alicia (2009). Genetic Evidence for Complexity in Ethnic Differentiation and History in East Africa. Annals of human genetics, 73(6), pp. 582-600. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2009.00541.x

Ray, Nicolas; Excoffier, Laurent (2009). Inferring past demography using spatially-explicit population genetic models. Human biology, 81(2-3), pp. 141-157. Detroit, Mich.: Wayne State University Press 10.3378/027.081.0303

Soland-Reckeweg, Gabriele; Heckel, Gerald; Neumann, Peter; Fluri, Peter; Excoffier, Laurent (2009). Gene flow in admixed populations and implications for the conservation of the Western honeybee, Apis mellifera. Journal of insect conservation, 13(3), pp. 317-328. London: Springer Netherlands 10.1007/s10841-008-9175-0

Wegmann, Daniel; Leuenberger, Christoph; Excoffier, Laurent (2009). Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood. Genetics, 182(4), pp. 1207-1218. Bethesda, Md.: Genetics Society of America 10.1534/genetics.109.102509

Giger, Thomas; Excoffier, Laurent; Amstutz, Ursula; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Kelso, Janet; Largiadèr, Carlo R (2008). Population transcriptomics of life-history variation in the genus Salmo. Molecular Ecology, 17(13), pp. 3095-3108. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03820.x

Neuenschwander, Samuel; Largiadèr, Carlo R; Ray, Nicolas; Currat, Mathias; Vonlanthen, Pascal; Excoffier, Laurent (2008). Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Molecular Ecology, 17(3), pp. 757-772. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03621.x

Currat, M.; Ray, N.; Excoffier, L. (2008). Genetic simulations of population interactions during past human expansions in Europe. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 37-47). Cambridge: McDonald Institute for Archaeological Research

Currat, Mathias; Ruedi, Manuel; Petit, Rémy J.; Excoffier, Laurent (2008). The hidden side of invasions: massive introgression by local genes. Evolution, 62(8), pp. 1908-1920. Hoboken, N.J.: Wiley 10.1111/j.1558-5646.2008.00413.x

Excoffier, Laurent; Ray, Nicolas (2008). Surfing during population expansions promotes genetic revolutions and structuration. Trends in ecology & evolution, 23(7), pp. 347-351. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2008.04.004

Excoffier, L.; Ray, N.; Currat, M. (2008). Where was Paradise? A simulation study of the spread of early modern humans in heterogeneous environments. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 9-18). Cambridge: McDonald Institute for Archaeological Research

Fagundes, Nelson J. R.; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco M.; Bonatto, Sandro L.; Excoffier, Laurent (2008). Reply to Garrigan and Hammer: Ancient lineages and assimilation. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 105(2), E4. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0711261105

Ray, N.; Currat, M.; Excoffier, L. (2008). Incorporating environmental heterogeneity in spatially-explicit simulations of human genetic diversity. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 103-117). Cambridge: McDonald Institute for Archaeological Research

Ruedi, Manuel; Walter, Simon; Fischer, Martin C.; Scaravelli, Dino; Excoffier, Laurent; Heckel, Gerald (2008). Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology, 17(7), pp. 1801-1814. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03702.x

Wang, Sijia; Ray, Nicolas; Rojas, Winston; Parra, Maria V.; Bedoya, Gabriel; Gallo, Carla; Poletti, Giovanni; Mazzotti, Guido; Hill, Kim; Hurtado, Ana M.; Camrena, Beatriz; Nicolini, Humberto; Klitz, William; Barrantes, Ramiro; Molina, Julio A.; Freimer, Nelson B.; Bortolini, Maria Cátira; Salzano, Francisco M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; ... (2008). Geographic Patterns of Genome Admixture in Latin American Mestizos. PLoS genetics, 4(3), e1000037. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1000037

Wegmann, Daniel; Dupanloup, Isabelle; Excoffier, Laurent (2008). Width of Gene Expression Profile Drives Alternative Splicing. PLoS ONE, 3(10), e3587. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0003587

Vonlanthen, Pascal; Excoffier, Laurent; Bittner, David; Persat, H; Neuenschwander, S; Largiadèr, Carlo (2007). Genetic analysis of potential postglacial watershed crossings in central Europe by the bullhead (Cottus gobio L). Molecular Ecology, 16(21), pp. 4572-4584. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03531.x

Giger, Thomas; Amstutz, Ursula; Excoffier, Laurent; Champigneulle, Alexis; Day, Philip; Powell, Richard; Largiadèr, Carlo (2007). The genetic basis of smoltification: Functional genomics tools facilitate the search for the needle in the haystack. In: Harris, Graeme; Millner, Nigel (eds.) Sea Trout: Biology Conservation and Management (pp. 183-195). Chichester: John Wiley & Sons 10.1002/9780470996027.ch13

Excoffier, Laurent (2007). Analysis of Population Subdivision. In: Balding, David J.; Bishop, Martin; Cannings, Chris (eds.) Handbook of Statistical Genetics (pp. 980-1020). Chichester: John Wiley & Sons

Fagundes, Nelson; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco; Bonatto, Sandro; Excoffier, Laurent (2007). Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 104(45), pp. 17614-17619. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0708280104

Fink, Sabine; Excoffier, Laurent; Heckel, Gerhard (2007). High variability and non-neutral evolution of the mammalian avpr1a gene. BMC evolutionary biology, 7(1), p. 176. London: BioMed Central 10.1186/1471-2148-7-176

Pawlowski, Jan; Fahrni, José; Lecroq, B; Longet, David; Cornelius, N; Excoffier, Laurent; Cedhagen, Tomas; Gooday, Andrew (2007). Bipolar gene flow in deep-sea benthic foraminifera. Molecular Ecology, 16(19), pp. 4089-4096. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03465.x

Schweizer, Manuel; Excoffier, Laurent; Heckel, Gerald (2007). Fine-scale genetic structure and dispersal in the common vole (Microtus arvalis). Molecular Ecology, 16(12), pp. 2463-2473. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03284.x

Wang, Sijia; Lewis, Cecil; Jakobsson, Mattias; Ramachandran, Sohini; Ray, Nicolas; Bedoya, Gabriel; Rojas, Winston; Parra, Maria; Molina, Julio; Gallo, Carla; Mazzotti, Guido; Poletti, Giovanni; Hill, Kim; Hurtado, Ana; Labuda, Damian; Klitz, William; Barrantes, Ramiro; Bortolini, Maria; Salzano, Francisco; Petzl-Erler, Maria; ... (2007). Genetic Variation and Population Structure in Native Americans. PLoS genetics, 3(11), e185. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.0030185

Giger, Thomas; Excoffier, Laurent; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Powell, Richard; Largiadèr, Carlo R (2006). Life history shapes gene expression in salmonids. Current Biology, 16(8), R281-R282. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.03.053

Currat, Mathias; Excoffier, Laurent; Maddison, Wayne; Otto, Sarah; Ray, Nicolas; Whitlock, Michael; Yeaman, Sam (2006). Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans". Science, 313(5784), p. 172. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1122712

Berthier, Pierre; Excoffier, Laurent; Ruedi, Manuel (2006). Replacement of mtDNA and cryptic hybridization between two sibling bat species Myotis myotis and Myotis blythii. Proceedings of the Royal Society. Series B - biological sciences, 273(1605), pp. 3101-3123. London: Royal Society of London 10.1098/rspb.2006.3680

Drake, Jared; Bird, Christine; Nemesh, James; Thomas, Daryl; Newton-Cheh, Christopher; Reymond, Alexandre; Excoffier, Laurent; Attar, Homa; Antonarakis, Stylianos; Dermitzakis, Emmanouil; Hirschhorn, Joel (2006). Conserved noncoding sequences are selectively constrained and not mutation cold spots. Nature genetics, 38(2), pp. 223-227. New York, N.Y.: Nature America 10.1038/ng1710

Excoffier, Laurent (2006). Neandertal genetic diversity: A fresh look from old samples. Current Biology, 16(16), R650-R652. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.07.035

Excoffier, Laurent; Heckel, Gerald (2006). Computer programs for population genetics data analysis: a survival guide. Nature Reviews. Genetics, 7(10), pp. 745-758. London: Natue Publishing Group 10.1038/nrg1904

Fink, Sabine; Excoffier, Laurent; Heckel, Gerald (2006). Mammalian monogamy is not controlled by a single gene. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 103(29), pp. 10956-10960. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0602380103

Klopfstein, Seraina; Currat, Mathias; Excoffier, Laurent (2006). The fate of mutations surfing on the wave of a range expansion. Molecular Biology and Evolution, 23(3), pp. 482-490. Oxford: Oxford University Press 10.1093/molbev/msj057

Wegmann, Daniel; Currat, Mathias; Excoffier, Laurent (2006). Molecular diversity after a range expansion in heterogeneous environments. Genetics, 174(4), pp. 2009-2020. Bethesda, Md.: Genetics Society of America 10.1534/genetics.106.062851

Currat, Mathias; Excoffier, Laurent (2004). Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe. PLoS biology, 2(12), e421. Public Library of Science 10.1371/journal.pbio.0020421

Laval, Guillaume; Excoffier, Laurent (2004). SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics, 20(15), pp. 2485-2487. Oxford University Press 10.1093/bioinformatics/bth264

Feller, Anna Fiona

Marques, David Alexander; Lucek, Kay Jurka Olaf; Häsler, Marcel; Feller, Anna Fiona; Meier, Joana; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Molecular Ecology, 26(1), pp. 7-24. Wiley-Blackwell 10.1111/mec.13774

Fernandez Trigo, Nerea

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Fink, Sabine

Heckel, G.; Fink, S. (2008). Evolution of the arginine vasopressin 1 a receptor and implications for mammalian social behavior. In: Landgraf, Rainer; Neumann, Inga (eds.) Advances in vasopressin and oxytocin - from gene to behavior 170 (pp. 321-330). Amsterdam: Elsevier 10.1016/S0079-6123(08)00426-3

Fischer, Martin

Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644

Fischer, Martin; Foll, Matthieu; Heckel, Gerald; Excoffier, Laurent (2014). Continental-Scale Footprint of Balancing and Positive Selection in a Small Rodent (Microtus arvalis). PLoS ONE, 9(11), e112332. Public Library of Science

Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x

Ruedi, Manuel; Walter, Simon; Fischer, Martin C.; Scaravelli, Dino; Excoffier, Laurent; Heckel, Gerald (2008). Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology, 17(7), pp. 1801-1814. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03702.x

Foll, Matthieu

Amorim, Carlos Eduardo G.; Daub, Joséphine; Salzano, Francisco M.; Foll, Matthieu; Excoffier, Laurent (2015). Detection of convergent genome-wide signals of adaptation to tropical forests in humans. PLoS ONE, 10(4), pp. 1-19. Public Library of Science 10.1371/journal.pone.0121557

Fischer, Martin; Foll, Matthieu; Heckel, Gerald; Excoffier, Laurent (2014). Continental-Scale Footprint of Balancing and Positive Selection in a Small Rodent (Microtus arvalis). PLoS ONE, 9(11), e112332. Public Library of Science

Foll, Matthieu; Gaggiotti, Oscar; Daub, Joséphine; Vatsiou, Alexandra; Excoffier, Laurent (2014). Widespread Signals of Convergent Adaptation to High Altitude in Asia and America. American journal of human genetics, 95(4), pp. 394-407. Cell Press 10.1016/j.ajhg.2014.09.002

Perry, George H.; Foll, Matthieu; Grenier, Jean-Christophe; Patin, Etienne; Nédélec, Yohann; Pacis, Alain; Barakatt, Maxime; Gravel, Simon; Zhou, Xiang; Nsobya, Sam L.; Excoffier, Laurent; Quintana-Murci, Lluis; Dominy, Nathaniel J.; Barreiro, Luis B. (2014). Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(35), E3596-E3603. National Academy of Sciences NAS 10.1073/pnas.1402875111

Excoffier, Laurent; Dupanloup, Isabelle; Huerta-Sánchez, Emilia; Sousa, Vitor C.; Foll, Matthieu (2013). Robust demographic inference from genomic and SNP data. PLoS genetics, 9(10), e1003905. Public Library of Science 10.1371/journal.pgen.1003905

Sunnaker, Mikael; Busetto, Alberto Giovanni; Numminen, Elina; Corander, Jukka; Foll, Matthieu; Dessimoz, Christophe (2013). Approximate Bayesian Computation. PLoS computational biology, 9(1), e1002803. Public Library of Science 10.1371/journal.pcbi.1002803

Alves, Isabel; Srámková Hanulová, A.; Foll, Matthieu; Excoffier, Laurent (2012). Genomic Data Reveal a Complex Making of Humans. PLoS genetics, 8(7), e1002837. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1002837

Hofer, Tamara; Foll, Matthieu; Excoffier, Laurent (2012). Evolutionary forces shaping genomic islands of population differentiation in humans. BMC Genomics, 13(1), p. 107. London: BioMed Central 10.1186/1471-2164-13-107

Excoffier, Laurent; Foll, Matthieu (2011). fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics, 27(9), pp. 1332-1334. Oxford: Oxford University Press 10.1093/bioinformatics/btr124

Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x

Gaggiotti, Oscar E.; Foll, Matthieu (2010). Quantifying population structure using the F-model. Molecular ecology resources, 10(5), pp. 821-830. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02873.x

Excoffier, Laurent; Foll, Matthieu; Petit, Rémy J. (2009). Genetic Consequences of Range Expansions. Annual review of ecology, evolution, and systematics, 40(1), pp. 481-501. Palo Alto, Calif.: Annual Reviews Inc. 10.1146/annurev.ecolsys.39.110707.173414

Excoffier, Laurent; Hofer, Tamara; Foll, Matthieu (2009). Detecting loci under selection in a hierarchically structured population. Heredity, 103(4), pp. 285-298. London: Oliver and Boyd 10.1038/hdy.2009.74

Gaggiotti, Oscar E.; Bekkevold, Dorte; Jorgensen, Hanne B.H.; Foll, Matthieu; Carvalho, Gary R.; Andre, Carl; Ruzzante, Daniel E. (2009). Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: atlantic herring as a case study. Evolution, 63(11), 2939 - 2951. Hoboken, N.J.: Wiley 10.1111/j.1558-5646.2009.00779.x

Guillot, Gilles; Foll, Matthieu (2009). Correcting for ascertainment bias in the inference of population structure. Bioinformatics, 25(4), pp. 552-554. Oxford: Oxford University Press 10.1093/bioinformatics/btn665

Foote, Andrew David

Foote, Andrew D.; Gilbert, M. Thomas P.; Gopalakrishnan, Shyam; Louis, Marie; Martin, Michael D.; Morin, Phillip A.; Nykänen, Milaja; Scharff-Olsen, Camilla Hjorth; Excoffier, Laurent (21 August 2021). Evidence of long-term purging of mutation load in killer whale genomes (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.21.457186

Foote, Andrew D.; Hooper, Rebecca; Alexander, Alana; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Excoffier, Laurent; Fordyce Martin, Sarah L.; Forney, Karin A.; Gerrodette, Tim; Gilbert, M. Thomas P.; Guinet, Christophe; ... (2021). Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology, 30(23), pp. 6162-6177. Wiley-Blackwell 10.1111/mec.16137

Foote, Andrew D.; Martin, Michael D.; Louis, Marie; Pacheco, George; Robertson, Kelly M.; Sinding, Mikkel-Holger S.; Amaral, Ana R.; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dabin, Willy; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Ferguson, Steven H.; ... (2019). Killer whale genomes reveal a complex history of recurrent admixture and vicariance. Molecular Ecology, 28(14), pp. 3427-3444. Wiley-Blackwell 10.1111/mec.15099

Foote, Andrew David; Vijay, Nagarjun; Ávila-Arcos, María C.; Baird, Robin W.; Durban, John W.; Fumagalli, Matteo; Gibbs, Richard A.; Hanson, M. Bradley; Korneliussen, Thorfinn S.; Martin, Michael D.; Robertson, Kelly M.; Martins Conde e Sousa, Vitor; Vieira, Filipe G.; Vinar, Tomás; Wade, Paul; Worley, Kim C.; Excoffier, Laurent; Morin, Phillip A.; Gilbert, M. Thomas P. and Wolf, Jochen B.W. (2016). Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nature communications, 7(7), p. 11693. Nature Publishing Group 10.1038/ncomms11693

Foucal, Adrien

Schubert, Mikkel; Jónsson, Hákon; Chang, Dan; Der Sarkissian, Clio; Ermini, Luca; Ginolhac, Aurélien; Albrechtsen, Anders; Dupanloup, Isabelle; Foucal, Adrien; Petersen, Bent; Fumagalli, Matteo; Raghavan, Maanasa; Seguin-Orlando, Andaine; Korneliussen, Thorfinn S.; Velazquez, Amhed M. V.; Stenderup, Jesper; Hoover, Cindi A.; Rubin, Carl-Johan; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; ... (2014). Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(52), E5661-E5669. National Academy of Sciences NAS 10.1073/pnas.1416991111

Ganal-Vonarburg, Stephanie Christine

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Gilbert, Kimberly Julie

Gilbert, Kimberly J.; Pouyet, Fanny; Excoffier, Laurent; Peischl, Stephan (2020). Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination. Current Biology, 30(1), pp. 101-107. Cell Press 10.1016/j.cub.2019.11.063

Gilbert, Kimberly J.; Peischl, Stephan; Excoffier, Laurent (2018). Mutation load dynamics during environmentally-driven range shifts. PLoS genetics, 14(9), pp. 1-18. Public Library of Science 10.1371/journal.pgen.1007450

Gomez de Agüero Tamargo, Maria de la Mercedes

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Gouy, Alexandre Pierre

Armstrong, Ellie E.; Khan, Anubhab; Taylor, Ryan W.; Gouy, Alexandre; Greenbaum, Gili; Thiéry, Alexandre; Kang, Jonathan T.; Redondo, Sergio A.; Prost, Stefan; Barsh, Gregory; Kaelin, Christopher; Phalke, Sameer; Chugani, Anup; Gilbert, Martin; Miquelle, Dale; Zachariah, Arun; Borthakur, Udayan; Reddy, Anuradha; Louis, Edward; Ryder, Oliver A.; ... (2021). Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection. Molecular Biology and Evolution, 38(6), pp. 2366-2379. Oxford University Press 10.1093/molbev/msab032

Excoffier, Laurent; Marchi, Nina; Marques, David Alexander; Matthey-Doret, Remi; Gouy, Alexandre; Sousa, Vitor C. (2021). fastsimcoal2 : demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), pp. 4882-4885. Oxford University Press 10.1093/bioinformatics/btab468

Gouy, Alexandre; Excoffier, Laurent (2020). Polygenic Patterns of Adaptive Introgression in Modern Humans Are Mainly Shaped by Response to Pathogens. Molecular Biology and Evolution, 37(5), pp. 1420-1433. Oxford University Press 10.1093/molbev/msz306

Gouy, Alexandre; Daub, Joséphine T.; Excoffier, Laurent (2017). Detecting gene subnetworks under selection in biological pathways. Nucleic acids research, 45(16), e149. Information Retrieval Ltd. 10.1093/nar/gkx626

Heckel, Gerald

Labutin, Anton; Heckel, Gerald (2024). Genome-wide support for incipient Tula hantavirus species within a single rodent host lineage. Virus evolution, 10(veae002) Oxford University Press 10.1093/ve/veae002

Wang, Xuejing; Peischl, Stephan; Heckel, Gerald (2023). Demographic history and genomic consequences of 10,000 generations of isolation in a wild mammal. Current biology, 33(10), 2051-2062.e4. Cell Press 10.1016/j.cub.2023.04.042

Mehl, Calvin; Wylezich, Claudia; Geiger, Christina; Schauerte, Nicole; Mätz-Rensing, Kerstin; Nesseler, Anne; Höper, Dirk; Linnenbrink, Miriam; Beer, Martin; Heckel, Gerald; Ulrich, Rainer G. (2023). Reemergence of Lymphocytic Choriomeningitis Mammarenavirus, Germany. Emerging infectious diseases, 29(3), pp. 631-634. Centers for Disease Control and Prevention 10.3201/eid2903.221822

Baca, Mateusz; Popović, Danijela; Lemanik, Anna; Bañuls-Cardona, Sandra; Conard, Nicholas J.; Cuenca-Bescós, Gloria; Desclaux, Emmanuel; Fewlass, Helen; Garcia, Jesus T.; Hadravova, Tereza; Heckel, Gerald; Horáček, Ivan; Vlasta Knul, Monika; Lebreton, Loïc; López-García, Juan Manuel; Luzi, Elisa; Marković, Zoran; Mauch Lenardić, Jadranka; Murelaga, Xabier; Noiret, Pierre; ... (2023). Ancient DNA reveals interstadials as a driver of common vole population dynamics during the last glacial period. Journal of biogeography, 50(1), pp. 183-196. Wiley 10.1111/jbi.14521

Jeske, Kathrin; Schulz, Jana; Tekemen, Duygu; Balciauskas, Linas; Balciauskiene, Laima; Hiltbrunner, Melanie; Drewes, Stephan; Mayer-Scholl, Anne; Heckel, Gerald; Ulrich, Rainer G. (2022). Cocirculation of Leptospira spp. andmultiple orthohantaviruses in rodents, Lithuania, Northern Europe. Transboundary and emerging diseases, 69(5), e3196-e3201. Wiley 10.1111/tbed.14470

Jeske, Kathrin; Herzig-Straschil, Barbara; Răileanu, Cristian; Kunec, Dusan; Tauchmann, Oliver; Emirhar, Duygu; Schmidt, Sabrina; Trimpert, Jakob; Silaghi, Cornelia; Heckel, Gerald; Ulrich, Rainer G.; Drewes, Stephan (2022). Zoonotic pathogen screening of striped field mice (Apodemus agrarius) from Austria. Transboundary and emerging diseases, 69(2), pp. 886-890. Wiley 10.1111/tbed.14015

Saxenhofer, Moritz; Labutin, Anton; White, Thomas A.; Heckel, Gerald (2022). Host genetic factors associated with the range limit of a European hantavirus. Molecular Ecology, 31(1), pp. 252-265. Wiley-Blackwell 10.1111/mec.16211

Tang, Qindong; Burri, Reto; Liu, Yang; Suh, Alexander; Sundev, Gombobaatar; Heckel, Gerald; Schweizer, Manuel (2022). Seasonal migration patterns and the maintenance of evolutionary diversity in a cryptic bird radiation. Molecular Ecology, 31(2), pp. 632-645. Wiley-Blackwell 10.1111/mec.16241

Duarte, Margarida Alexandra; Rodríguez Fernandes, Carlos; Heckel, Gerald; da Luz Mathias, Maria; Bastos-Silveira, Cristiane (2021). Variation and Selection in the Putative Sperm-Binding Region of ZP3 in Muroid Rodents: A Comparison between Cricetids and Murines. Genes, 12(9), p. 1450. MDPI, Molecular Diversity Preservation International 10.3390/genes12091450

Jeske, Kathrin; Emirhar, Duygu; García, Jesús T.; González-Barrio, David; Olea, Pedro P.; Ruiz Fons, Francisco; Schulz, Jana; Mayer-Scholl, Anne; Heckel, Gerald; Ulrich, Rainer G. (2021). FREQUENT LEPTOSPIRA SPP. DETECTION BUT ABSENCE OF TULA ORTHOHANTAVIRUS IN MICROTUS SPP. VOLES, NORTHWESTERN SPAIN. Journal of wildlife diseases, 57(4), pp. 733-742. Wildlife Disease Association 10.7589/JWD-D-20-00109

Schneider, Julia; Hoffmann, Bernd; Fevola, Cristina; Schmidt, Marie Luisa; Imholt, Christian; Fischer, Stefan; Ecke, Frauke; Hörnfeldt, Birger; Magnusson, Magnus; Olsson, Gert E.; Rizzoli, Annapaola; Tagliapietra, Valentina; Chiari, Mario; Reusken, Chantal; Bužan, Elena; Kazimirova, Maria; Stanko, Michal; White, Thomas A.; Reil, Daniela; Obiegala, Anna; ... (2021). Geographical Distribution and Genetic Diversity of Bank Vole Hepaciviruses in Europe. Viruses, 13(7), p. 1258. Molecular Diversity Preservation International MDPI 10.3390/v13071258

Schmidt, Sabrina; Reil, Daniela; Jeske, Kathrin; Drewes, Stephan; Rosenfeld, Ulrike M.; Fischer, Stefan; Spierling, Nastasja G.; Labutin, Anton; Heckel, Gerald; Jacob, Jens; Ulrich, Rainer G.; Imholt, Christian (2021). Spatial and Temporal Dynamics and Molecular Evolution of Tula orthohantavirus in German Vole Populations. Viruses, 13(6), p. 1132. Molecular Diversity Preservation International MDPI 10.3390/v13061132

Cierniak, Filip; von Arnim, Felicitas; Heckel, Gerald; Ulrich, Rainer G.; Groschup, Martin H.; Eiden, Martin (2021). A Putative Novel Hepatitis E Virus Genotype 3 Subtype Identified in Rabbit, Germany 2016. Viruses, 13(6), p. 1065. Molecular Diversity Preservation International MDPI 10.3390/v13061065

Drewes, Stephan; Jeske, Kathrin; Straková, Petra; Balciauskas, Linas; Ryll, René; Balciauskiene, Laima; Kohlhause, David; Schnidrig, Guy-Alain; Hiltbrunner, Melanie; Špakova, Aliona; Insodaite, Rasa; Petraityte-Burneikiene, Rasa; Heckel, Gerald; Ulrich, Rainer G. (2021). Identification of a novel hantavirus strain in the root vole (Microtus oeconomus) in Lithuania, Eastern Europe. Infection, genetics and evolution, 90, p. 104520. Elsevier 10.1016/j.meegid.2020.104520

Li, Hao-Sen; Huang, Yu-Hao; Chen, Mei-Lan; Ren, Zhan; Qiu, Bo-Yuan; De Clercq, Patrick; Heckel, Gerald; Pang, Hong (2021). Genomic insight into diet adaptation in the biological control agent Cryptolaemus montrouzieri. BMC Genomics, 22(135), pp. 1-12. BioMed Central 10.1186/s12864-021-07442-3

Jeske, K.; Jacob, J.; Drewes, S.; Pfeffer, M.; Heckel, G.; Ulrich, R. G.; Imholt, C. (2021). Hantavirus–Leptospira coinfections in small mammals from central Germany. Epidemiology and infection, 149(e97), pp. 1-10. Cambridge University Press 10.1017/S0950268821000443

Hiltbrunner, Melanie; Heckel, Gerald (2020). Assessing Genome-Wide Diversity in European Hantaviruses through Sequence Capture from Natural Host Samples. Viruses, 12(7), p. 749. Molecular Diversity Preservation International MDPI 10.3390/v12070749

Binder, Florian; Ryll, René; Drewes, Stephan; Jagdmann, Sandra; Reil, Daniela; Hiltbrunner, Melanie; Rosenfeld, Ulrike M.; Imholt, Christian; Jacob, Jens; Heckel, Gerald; Ulrich, Rainer G. (2020). Spatial and Temporal Evolutionary Patterns in Puumala Orthohantavirus (PUUV) S Segment. Pathogens, 9(7) MDPI AG 10.3390/pathogens9070548

Jeske, Kathrin; Hiltbrunner, Melanie; Drewes, Stephan; Ryll, René; Wenk, Matthias; Špakova, Aliona; Petraitytė‑Burneikienė, Rasa; Heckel, Gerald; Ulrich, Rainer G. (2019). Field vole‑associated Traemmersee hantavirus from Germany represents a novel hantavirus species. Virus genes, 55(6), pp. 848-853. Springer 10.1007/s11262-019-01706-7

Ryll, René; Heckel, Gerald; Corman, Victor M.; Drexler, Jan Felix; Ulrich, Rainer G. (2019). Genomic and spatial variability of a European common vole hepevirus. Archives of virology, 164(11), pp. 2671-2682. Springer 10.1007/s00705-019-04347-1

Wang, Xuejing; Que, Pinjia; Heckel, Gerald; Hu, Junhua; Zhang, Xuecong; Chiang, Chung-Yu; Zhang, Nan; Huang, Qin; Liu, Simin; Martinez, Jonathan; Pagani-Núñez, Emilio; Dingle, Caroline; Leung, Yu Yan; Székely, Tamás; Zhang, Zhengwang; Liu, Yang (2019). Genetic, phenotypic and ecological differentiation suggests incipient speciation in two Charadrius plovers along the Chinese coast. BMC evolutionary biology, 19(1), pp. 1-18. BioMed Central 10.1186/s12862-019-1449-5

Saxenhofer, Moritz; Schmidt, Sabrina; Ulrich, Rainer G.; Heckel, Gerald (2019). Secondary contact between diverged host lineages entails ecological speciation in a European hantavirus. PLoS biology, 17(2), e3000142. Public Library of Science 10.1371/journal.pbio.3000142

Li, Hao-Sen; Heckel, Gerald; Huang, Yu-Hao; Fan, Wei-Jian; Ślipiński, Adam; Pang, Hong (2019). Genomic changes in the biological control agent Cryptolaemus montrouzieri associated with introduction. Evolutionary applications, 12(5), pp. 989-1000. Wiley 10.1111/eva.12774

Pedreschi, Debbi; García-Rodríguez, Oxala; Yannic, Glenn; Cantarello, Elena; Diaz, Anita; Golicher, Duncan; Korstjens, Amanda H.; Heckel, Gerald; Searle, Jeremy B.; Gillingham, Phillipa; Hardouin, Emilie A.; Stewart, John R. (2019). Challenging the European southern refugium hypothesis: Species‐specific structures versus general patterns of genetic diversity and differentiation among small mammals. Global Ecology and Biogeography, 28(2), pp. 262-274. Wiley-Blackwell 10.1111/geb.12828

Bize, Pierre; Lowe, Imogen; Hürlimann, Mikko Lehto; Heckel, Gerald (2018). Effects of the Mitochondrial and Nuclear Genomes on Nonshivering Thermogenesis in a Wild Derived Rodent. Integrative and comparative biology, 58(3), pp. 532-543. Oxford University Press 10.1093/icb/icy072

Zemanova, Miriam Andela; Broennimann, Olivier; Guisan, Antoine; Knop, Eva; Heckel, Gerald (2018). Slimy invasion: Climatic niche and current and future biogeography of Arion slug invaders. Diversity and Distributions, 24(11), pp. 1627-1640. Wiley-Blackwell 10.1111/ddi.12789

Ryll, R; Eiden, M; Heuser, E; Weinhardt, M; Ziege, M; Höper, D; Groschup, MH; Heckel, Gerald; Johne, R; Ulrich, RG (2018). Hepatitis E virus in feral rabbits along a rural-urban transect in Central Germany. Infection, genetics and evolution, 61(61), pp. 155-159. Elsevier 10.1016/j.meegid.2018.03.019

Schmid, Sarah; Neuenschwander, Samuel; Pitteloud, Camille; Heckel, Gerald; Pajkovic, Mila; Arlettaz, Raphaël; Alvarez, Nadir (2018). Spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus revealed by museum genomics. Ecology and evolution, 8(3), pp. 1480-1495. John Wiley & Sons, Inc. 10.1002/ece3.3699

Saxenhofer, Moritz; Weber de Melo, Vanessa; Ulrich, Rainer G.; Heckel, Gerald (2017). Revised time scales of RNA virus evolution based on spatial information. Proceedings of the Royal Society. Series B - biological sciences, 284(1860), p. 20170857. Royal Society of London 10.1098/rspb.2017.0857

Ryll, René; Bernstein, Samuel; Heuser, Elisa; Schlegel, Mathias; Dremsek, Paul; Zumpe, Maxi; Wolf, Sandro; Pépin, Michel; Bajomi, Daniel; Müller, Gabi; Heiberg, Ann-Charlotte; Spahr, Carina; Lang, Johannes; Groschup, Martin H.; Ansorge, Hermann; Freise, Jona; Guenther, Sebastian; Baert, Kristof; Ruiz-Fons, Francisco; Pikula, Jiri; ... (2017). Detection of rat hepatitis E virus in wild Norway rats (Rattus norvegicus) and Black rats (Rattus rattus) from 11 European countries. Veterinary microbiology, 208(208), pp. 58-68. Elsevier 10.1016/j.vetmic.2017.07.001

Rosenfeld, Ulrike M.; Drewes, Stephan; Sheikh Ali, Hanan; Sadowska, Edyta T.; Mikowska, Magdalena; Heckel, Gerald; Koteja, Pawel; Ulrich, Rainer G. (2017). A highly divergent Puumala virus lineage in southern Poland. Archives of virology, 162(5), pp. 1177-1185. Springer 10.1007/s00705-016-3200-5

Drewes, Stephan; Sheikh Ali, Hanan; Saxenhofer, Moritz; Rosenfeld, Ulrike M.; Binder, Florian; Cuypers, Fabian; Schlegel, Mathias; Röhrs, Susanne; Heckel, Gerald; Ulrich, Rainer G. (2017). Host-Associated Absence of Human Puumala Virus Infections in Northern and Eastern Germany. Emerging infectious diseases, 23(1), pp. 83-86. U.S. National Center for Infectious Diseases 10.3201/eid2301.160224

Resano Mayor, Jaime; Fernández-Martín, Àngel; Hernández-Gómez, Sergio; Toranzo, Ignasi; España, Antonio; Gil, Juan Antonio; de Gabriel, Miguel; Roa-Álvarez, Isabel; Strinella, Eliseo; Hobson, Keith A.; Heckel, Gerald; Arlettaz, Raphaël (2017). Integrating genetic and stable isotope analyses to infer the population structure of the White-winged Snowfinch Montifringilla nivalis in Western Europe. Journal of ornithology, 158(2), pp. 395-405. Springer 10.1007/s10336-016-1413-8

Duarte, Margarida Alexandra; Heckel, Gerald; da Luz Mathias, Maria; Bastos-Silveira, Cristiane (2016). Olfactory receptors and behavioural isolation: a study on Microtus voles. Mammal resarch, 61(4), pp. 399-407. Springer 10.1007/s13364-016-0266-0

Schmidt, Sabrina; Saxenhofer, Moritz; Drewes, Stephan; Schlegel, Mathias; Wanka, Konrad M.; Frank, Raphael; Klimpel, Sven; von Blanckenhagen, Felix; Maaz, Denny; Herden, Christiane; Freise, Jona; Wolf, Ronny; Stubbe, Michael; Borkenhagen, Peter; Ansorge, Hermann; Eccard, Jana A.; Lang, Johannes; Jourdain, Elsa; Jacob, Jens; Marianneau, Philippe; ... (2016). High genetic structuring of Tula hantavirus. Archives of virology, 161(5), pp. 1135-1149. Springer 10.1007/s00705-016-2762-6

Weber de Melo, Vanessa; Sheikh Ali, Hanan; Freise, Jona; Kühnert, Denise; Essbauer, Sandra; Mertens, Marc; Wanka, Konrad M.; Drewes, Stephan; Ulrich, Rainer G.; Heckel, Gerald (2015). Spatiotemporal dynamics of Puumala hantavirus associated with its rodent host, Myodes glareolus. Evolutionary applications, 8(6), pp. 545-559. Wiley 10.1111/eva.12263

Zemanova, Miriam Andela; Knop, Eva; Heckel, Gerald (2015). Development and characterization of novel microsatellite markers for Arion slug species. Conservation genetics resources, 7(2), pp. 501-503. Springer 10.1007/s12686-014-0406-2

Sheikh Ali, Hanan; Drewes, Stephan; Weber de Melo, Vanessa; Schlegel, Mathias; Freise, Jona; Groschup, Martin H.; Heckel, Gerald; Ulrich, Rainer G. (2015). Complete genome of a Puumala virus strain from Central Europe. Virus genes, 50(2), pp. 292-298. Nijhoff 10.1007/s11262-014-1157-6

Beysard, Mathias; Krebs-Wheaton, Rebecca; Heckel, Gerald (2015). Tracing reinforcement through asymmetrical partner preference in the European common vole Microtus arvalis. BMC evolutionary biology, 15(1) BioMed Central 10.1186/s12862-015-0455-5

Beysard, Mathias; Heckel, Gerald (2014). Structure and dynamics of hybrid zones at different stages of speciation in the common vole (Microtus arvalis). Molecular Ecology, 23(3), pp. 673-687. Wiley-Blackwell 10.1111/mec.12613

Cucchi, Thomas; Barnett, Ross; Martínková, Natália; Renaud, Sabrina; Renvoisé, Elodie; Evin, Allowen; Sheridan, Alison; Mainland, Ingrid; Wickham-Jones, Caroline; Tougard, Christelle; Quéré, Jean-Pierre; Pascal, Michel; Pascal, Marine; Heckel, Gerald; O'Higgins, Paul; Searle, Jeremy B.; Dobney, Keith M. (2014). The changing pace of insular life: 5000 years of microevolution in the Orkney vole (Microtus arvalis orcadensis). Evolution, 68(10), pp. 2804-2820. Wiley 10.1111/evo.12476

Fischer, Martin; Foll, Matthieu; Heckel, Gerald; Excoffier, Laurent (2014). Continental-Scale Footprint of Balancing and Positive Selection in a Small Rodent (Microtus arvalis). PLoS ONE, 9(11), e112332. Public Library of Science

Johne, Reimar; Dremsek, Paul; Reetz, Jochen; Heckel, Gerald; Hess, Michael; Ulrich, Rainer G. (2014). Hepeviridae: An expanding family of vertebrate viruses. Infection, genetics and evolution, 27, pp. 212-229. Elsevier 10.1016/j.meegid.2014.06.024

Lischer, Heidi; Excoffier, Laurent; Heckel, Gerald (2014). Ignoring heterozygous sites biases phylogenomic estimates of divergence times: implications for the evolutionary history of Microtus voles. Molecular Biology and Evolution, 31(4), pp. 817-831. Oxford University Press 10.1093/molbev/mst271

Schmidt, Sabrina; Essbauer, Sandra S.; Mayer-Scholl, Anne; Poppert, Sven; Schmidt-Chanasit, Jonas; Klempa, Boris; Henning, Klaus; Schares, Gereon; Groschup, Martin H.; Spitzenberger, Friederike; Richter, Dania; Heckel, Gerald; Ulrich, Rainer G. (2014). Multiple infections of rodents with zoonotic pathogens in Austria. Vector-Borne and Zoonotic Diseases, 14(7), pp. 467-475. Mary Ann Liebert 10.1089/vbz.2013.1504

Sheikh Ali, Hanan; Drewes, Stephan; Sadowska, Edyta T.; Mikowska, Magdalena; Groschup, Martin H.; Heckel, Gerald; Koteja, Pawel; Ulrich, Rainer G. (2014). First Molecular Evidence for Puumala Hantavirus in Poland. Viruses, 6(1), pp. 340-353. Molecular Diversity Preservation International MDPI 10.3390/v6010340

Kittl, Sonja; Heckel, Gerald; Korczak, Bozena; Kuhnert, Peter (2013). Source attribution of human Campylobacter isolates by MLST and fla-typing and association of genotypes with quinolone resistance. PLoS ONE, 8(11), e81796. Public Library of Science 10.1371/journal.pone.0081796

Martinkova, Natália; Barnett, Ross; Cucchi, Thomas; Struchen, Rahel; Pascal, Marine; Pascal, Michel; Fischer, Martin C.; Higham, Thomas; Brace, Selina; Ho, Simon Y. W.; Quere, Jean-Pierre; O'Higgins, Paul; Excoffier, Laurent; Heckel, Gerald; Hoelzel, A. Rus; Dobney, Keith M.; Searle, Jeremy B. (2013). Divergent evolutionary processes associated with colonization of offshore islands. Molecular Ecology, 22(20), pp. 5205-5220. Wiley-Blackwell 10.1111/mec.12462

Liu, Yang; Keller, Irene; Heckel, Gerald (2013). Temporal genetic structure and relatedness in the Tufted Duck Aythya fuligula suggests limited kin association in winter. Ibis, 155(3), pp. 499-507. Wiley-Blackwell 10.1111/ibi.12059

Dong, Lu; Heckel, Gerald; Liang, Wei; Zhang, Yanyun (2013). Phylogeography of silver pheasant (Lophura nycthemera L.) across China: aggregate effects of refugia, introgression, and riverine barriers. Molecular Ecology, 22(12), pp. 3376-3390. Wiley-Blackwell 10.1111/mec.12315

White, Thomas A.; Perkins, Sarah E.; Heckel, Gerald; Searle, Jeremy B. (2013). Adaptive evolution during an ongoing range expansion: the invasive bank vole (Myodes glareolus) in Ireland. Molecular Ecology, 22(11), pp. 2971-2985. Wiley-Blackwell 10.1111/mec.12343

Kindler, Eveline; Trojnar, Eva; Heckel, Gerald; Otto, Peter H.; Johne, Reimar (2013). Analysis of rotavirus species diversity and evolution including the newly determined full-length genome sequences of rotavirus F and G. Infection, genetics and evolution, 14, pp. 58-67. Elsevier 10.1016/j.meegid.2012.11.015

Sutter, A.; Beysard, M.; Heckel, G. (2013). Sex-specific clines support incipient speciation in a common European mammal. Heredity, 110(4), pp. 398-404. Oliver and Boyd 10.1038/hdy.2012.124

Bastos-Silveira, C.; Santos, S.M.; Monarca, R.; Mathias Mda, L.; Heckel, G. (2012). Deep mitochondrial introgression and hybridization among ecologically divergent vole species. Molecular Ecology, 21(21), pp. 5309-5323. Oxford: Wiley-Blackwell 10.1111/mec.12018

Beysard, M.; Perrin, N.; Jaarola, M.; Heckel, G.; Vogel, P. (2012). Asymmetric and differential gene introgression at a contact zone between two highly divergent lineages of field voles (Microtus agrestis). Journal of Evolutionary Biology, 25(2), pp. 400-408. Basel: Wiley 10.1111/j.1420-9101.2011.02432.x

Johne, R.; Dremsek, P.; Kindler, E.; Schielke, A.; Plenge-Bönig, A.; Gregersen, H.; Wessels, U.; Schmidt, K.; Rietschel, W.; Groschup, M.H.; Guenther, S.; Heckel, G.; Ulrich, R.G. (2012). Rat hepatitis E virus: geographical clustering within Germany and serological detection in wild Norway rats (Rattus norvegicus). Infection, genetics and evolution, 12(5), pp. 947-956. Amsterdam: Elsevier 10.1016/j.meegid.2012.02.021

Kindler, E.; Arlettaz, R.; Heckel, G. (2012). Deep phylogeographic divergence and cytonuclear discordance in the grasshopper Oedaleus decorus. Molecular phylogenetics and evolution, 65(2), pp. 695-704. San Diego, Calif.: Elsevier 10.1016/j.ympev.2012.07.025

Kotrschal, A.; Heckel, G.; Bonfils, D.; Taborsky, B. (2012). Life-stage specific environments in a cichlid fish: implications for inducible maternal effects. Evolutionary ecology, 26(1), pp. 123-137. London: Springer Netherlands 10.1007/s10682-011-9495-5

Liu, Y.; Keller, I.; Heckel, G. (2012). Breeding site fidelity and winter admixture in a long-distance migrant, the tufted duck (Aythya fuligula). Heredity, 109(2), pp. 108-116. London: Oliver and Boyd 10.1038/hdy.2012.19

Schlegel, M.; Kindler, E.; Essbauer, S.S.; Wolf, R.; Thiel, J.; Groschup, M.H.; Heckel, G.; Oehme, R.M.; Ulrich, R.G. (2012). Tula Virus Infections in the Eurasian Water Vole in Central Europe. Vector-Borne and Zoonotic Diseases, 12(6), pp. 503-513. Larchmont, N.Y.: Mary Ann Liebert 10.1089/vbz.2011.0784

White, TA; Lundy, MG; Montgomery, WI; Montgomery, S; Perkins, SE; Lawton, C; Meehan, JM; Hayden, TJ; Heckel, G; Reid N Searle, JB (2012). Range expansion in an invasive small mammal: influence of life-history and habitat quality. Biological invasions, 14(10), pp. 2203-2215. Dordrecht: Springer Netherlands 10.1007/s10530-012-0225-x

Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x

Hahne, Joerg; Jenkins, Tania; Halle, Stefan; Heckel, Gerald (2011). Establishment success and resulting fitness consequences for vole dispersers. Oikos, 120(1), pp. 95-105. Oxford: Blackwell 10.1111/j.1600-0706.2010.18589.x

Johne, R.; Heckel, G.; Plenge-Bonig, A.; Kindler, E.; Maresch, C.; Reetz, J.; Schielke, A.; Ulrich, R.G. (2011). Complete genome of a novel hepatitis E virus genotype in Norway rat, Germany [response]. Emerging infectious diseases, 17, pp. 1982-1983. Atlanta, Ga.: U.S. National Center for Infectious Diseases

Liu, Y.; Keller, I.; Heckel, G. (2011). Range-wide genetic population structure in common pochard (Aythya ferina) a potentially important vector of highly pathogenic avian influenza viruses. Ecology, 1(4), pp. 529-545. Washington, D.C.: Ecological Society of America 10.1002/ece3.46

Mertens, M.; Kindler, E.; Emmerich, P.; Esser, J.; Wagner-Wiening, C.; Wolfel, R.; Petraityte-Burneikiene, R.; Schmidt-Chanasit, J.; Zvirbliene, A.; Groschup, M.H.; Dobler, G.; Pfeffer, M.; Heckel, G.; Ulrich, R.G.; Essbauer, S.S. (2011). Phylogenetic analysis of Puumala virus subtype Bavaria, characterization and diagnostic use of its recombinant nucleocapsid protein. Virus genes, 43(2), pp. 177-191. Boston, Mass.: Nijhoff 10.1007/s11262-011-0620-x

Stovicek, O.; Cizkova, D.; Liu, Y.; Alrecht, T.; Heckel, G.; Vyscocilova, M.; Kresinger, J. (2011). Development of microsatellite markers for a diving duck, the common pochard (Aythya ferina). Conservation genetics resources, 3(3), pp. 573-576. Dordrecht: Springer 10.1007/s12686-011-9407-6

Halami, Mohammad Yahya; Dorrestein, Gerry M.; Couteel, Peter; Heckel, Gerald; Muller, Hermann; Johne, Reimar (2010). Whole genome characterization of a novel polyomavirus detected in fatally diseased canary birds. Journal of general virology, 91(12), pp. 3016-3022. Reading: Society for General Microbiology 10.1099/vir.0.023549-0

Johne, Reimar; Heckel, Gerald; Plenge-Bönig, Anita; Kindler, Eveline; Maresch, Christina; Reetz, Jochen; Schielke, Anika; Ulrich, Rainer G. (2010). Novel hepatitis E virus genotype in Norway rats, Germany. Emerging infectious diseases, 16(9), pp. 1452-1455. Atlanta, Ga.: U.S. National Center for Infectious Diseases 10.3201/eid1609.100444

Schmidt-Chanasit, Jonas; Essbauer, Sandra; Petraityte, Rasa; Yoshimatsu, Kumiko; Tackmann, Kirsten; Conraths, Franz J.; Sasnauskas, Kestutis; Arikawa, Jiro; Thomas, Astrid; Pfeffer, Martin; Scharninghausen, Jerrold J.; Splettstoesser, Wolf; Wenk, Matthias; Heckel, Gerald; Ulrich, Rainer G. (2010). Extensive host sharing of Central European Tula virus. Journal of virology, 84(1), pp. 459-474. Baltimore: American Society for Microbiology 10.1128/JVI.01226-09

Braaker, Sonja; Heckel, Gerald (2009). Transalpine colonisation and partial phylogeographic erosion by dispersal in the common vole Microtus arvalis. Molecular Ecology, 18(11), pp. 2518-2531. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2009.04189.x

Soland-Reckeweg, Gabriele; Heckel, Gerald; Neumann, Peter; Fluri, Peter; Excoffier, Laurent (2009). Gene flow in admixed populations and implications for the conservation of the Western honeybee, Apis mellifera. Journal of insect conservation, 13(3), pp. 317-328. London: Springer Netherlands 10.1007/s10841-008-9175-0

Ulrich, RG; Heckel, Gerald; Pelz, HJ; Wieler, LH; Nordhoff, M.; Dobler, G.; Freise, J.; Matuschka, FR; Jacob, J.; Schmidt-Chanasit, J.; Gerstengarbe, FW; Jaekel, T.; Suess, J.; Ehlers, B.; Nitsche, A.; Kallies, R.; Johne, R.; Guenther, S.; Henning, K.; Grunow, R.; ... (2009). Nagetiere und Nagetierassoziierte Krankheitserreger (Rodents and rodent associated disease pathogen). Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz, 52(3), pp. 352-369. Heidelberg: Springer-Medizin-Verlag 10.1007/s00103-009-0798-4

Heckel, G.; Fink, S. (2008). Evolution of the arginine vasopressin 1 a receptor and implications for mammalian social behavior. In: Landgraf, Rainer; Neumann, Inga (eds.) Advances in vasopressin and oxytocin - from gene to behavior 170 (pp. 321-330). Amsterdam: Elsevier 10.1016/S0079-6123(08)00426-3

Ruedi, Manuel; Walter, Simon; Fischer, Martin C.; Scaravelli, Dino; Excoffier, Laurent; Heckel, Gerald (2008). Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology, 17(7), pp. 1801-1814. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03702.x

Schmidt-Chanasit, Jonas; Ölschläger, Stephan; Günther, Stephan; Jaeger, Gerold; Bleymehl, Karoline; Schäd, Susanne G.; Heckel, Gerald; Ulrich, Rainer G.; Doerr, Hans Wilhelm (2008). Molecular Analysis of Varicella-Zoster Virus Strains Circulating in Tanzania Demonstrating the Presence of Genotype M1. Journal of clinical microbiology, 46(10), pp. 3530-3533. Washington, D.C.: American Society for Microbiology 10.1128/JCM.01057-08

Ulrich, R. G.; Schmidt-Chanasit, J.; Schlegel, M.; Jacob, J.; Pelz, H.-J.; Mertens, M.; Wenk, M.; Büchner, T.; Masur, D.; Sevke, K.; Groschup, M. H.; Gerstengarbe, F.-W.; Pfeffer, M.; Oehme, R.; Wegener, W.; Bemmann, M.; Ohlmeyer, L.; Wolf, R.; Zoller, H.; Koch, J.; ... (2008). Network "Rodent-borne pathogens" in Germany: longitudinal studies on the geographical distribution and prevalence of hantavirus infections. Parasitology research, 103(Supplement 1), pp. 121-129. Berlin: Springer 10.1007/s00436-008-1054-9

Walser, Barbara; Heckel, Gerald (2008). Microsatellite markers for the common vole (Microtus arvalis) and their cross-species utility. Conservation genetics, 9(2), pp. 479-481. Dordrecht: Springer Netherlands 10.1007/s10592-007-9355-6

Nagy, Martina; Heckel, Gerald; Voigt, Christian; Mayer, Frieder (2007). Female-biased dispersal and patrilocal kin groups in a mammal with resource-defence polygyny. Proceedings of the Royal Society. Series B - biological sciences, 274(1628), pp. 3019-3025. London: Royal Society of London 10.1098/rspb.2007.1008

Schmidt-Chanasit, Jonas; Sturmer, Martin; Hahn, Anke; Schad, Susanne; Gross, Gerd; Ulrich, Rainer; Heckel, Gerald; Doerr, Hans (2007). Novel approach for genotyping varicella-zoster virus strains from Germany. Journal of clinical microbiology, 45(11), pp. 3540-3545. Washington, D.C.: American Society for Microbiology 10.1128/JCM.00979-07

Behr, Oliver; von Helversen, Otto; Heckel, Gerald; Nagy, Martina; Voigt, Christian; Mayer, Frieder (2006). Territorial songs indicate male quality in the sac-winged bat Saccopteryx bilineata (Emballonuridae). Behavioral Ecology, 17(5), pp. 810-817. New York, N.Y.: Oxford University Press 10.1093/beheco/arl013

Voigt, Christian; Heckel, Gerald; von Helversen, Otto (2006). Conflicts and strategies in the harem polygynous mating system of the sac-winged bat Saccopteryx bilineata. In: Kunz, Thomas; Zubaid, Akbar; McCracken, Gary F. (eds.) Functional and Evolutionary Ecology of Bats (pp. 269-289). Oxford: Oxford University Press

Hiltbrunner, Melanie

Jeske, Kathrin; Schulz, Jana; Tekemen, Duygu; Balciauskas, Linas; Balciauskiene, Laima; Hiltbrunner, Melanie; Drewes, Stephan; Mayer-Scholl, Anne; Heckel, Gerald; Ulrich, Rainer G. (2022). Cocirculation of Leptospira spp. andmultiple orthohantaviruses in rodents, Lithuania, Northern Europe. Transboundary and emerging diseases, 69(5), e3196-e3201. Wiley 10.1111/tbed.14470

Drewes, Stephan; Jeske, Kathrin; Straková, Petra; Balciauskas, Linas; Ryll, René; Balciauskiene, Laima; Kohlhause, David; Schnidrig, Guy-Alain; Hiltbrunner, Melanie; Špakova, Aliona; Insodaite, Rasa; Petraityte-Burneikiene, Rasa; Heckel, Gerald; Ulrich, Rainer G. (2021). Identification of a novel hantavirus strain in the root vole (Microtus oeconomus) in Lithuania, Eastern Europe. Infection, genetics and evolution, 90, p. 104520. Elsevier 10.1016/j.meegid.2020.104520

Hiltbrunner, Melanie; Heckel, Gerald (2020). Assessing Genome-Wide Diversity in European Hantaviruses through Sequence Capture from Natural Host Samples. Viruses, 12(7), p. 749. Molecular Diversity Preservation International MDPI 10.3390/v12070749

Binder, Florian; Ryll, René; Drewes, Stephan; Jagdmann, Sandra; Reil, Daniela; Hiltbrunner, Melanie; Rosenfeld, Ulrike M.; Imholt, Christian; Jacob, Jens; Heckel, Gerald; Ulrich, Rainer G. (2020). Spatial and Temporal Evolutionary Patterns in Puumala Orthohantavirus (PUUV) S Segment. Pathogens, 9(7) MDPI AG 10.3390/pathogens9070548

Jeske, Kathrin; Hiltbrunner, Melanie; Drewes, Stephan; Ryll, René; Wenk, Matthias; Špakova, Aliona; Petraitytė‑Burneikienė, Rasa; Heckel, Gerald; Ulrich, Rainer G. (2019). Field vole‑associated Traemmersee hantavirus from Germany represents a novel hantavirus species. Virus genes, 55(6), pp. 848-853. Springer 10.1007/s11262-019-01706-7

Hofer, Tamara

Daub, Joséphine; Hofer, Tamara; Cutivet, Emilie; Duperret, Isabelle; Quintana-Murci, L; Robinson-Rechavi, M; Excoffier, Laurent (2013). Evidence for Polygenic Adaptation to Pathogens in the Human Genome. Molecular Biology and Evolution, 30(7), pp. 1544-1558. Oxford University Press 10.1093/molbev/mst080

Hofer, Tamara; Foll, Matthieu; Excoffier, Laurent (2012). Evolutionary forces shaping genomic islands of population differentiation in humans. BMC Genomics, 13(1), p. 107. London: BioMed Central 10.1186/1471-2164-13-107

Excoffier, Laurent; Hofer, Tamara; Foll, Matthieu (2009). Detecting loci under selection in a hierarchically structured population. Heredity, 103(4), pp. 285-298. London: Oliver and Boyd 10.1038/hdy.2009.74

Häsler, Marcel

Marques, David Alexander; Lucek, Kay Jurka Olaf; Häsler, Marcel; Feller, Anna Fiona; Meier, Joana; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Molecular Ecology, 26(1), pp. 7-24. Wiley-Blackwell 10.1111/mec.13774

Kaessmann, Henrik

Dupanloup, Isabelle; Kaessmann, Henrik (2006). Evolutionary simulations to detect functional lineage-specific genes. Bioinformatics, 22(15), pp. 1815-1822. Oxford University Press 10.1093/bioinformatics/btl280

Kapopoulou, Adamantia

Marchi, Nina; Kapopoulou, Adamantia; Excoffier, Laurent (2024). Demogenomic inference from spatially and temporally heterogeneous samples. Molecular ecology resources, 24(1), pp. 1-11. Wiley 10.1111/1755-0998.13877

Joshi, Manas; Kapopoulou, Adamantia; Laurent, Stefan (2021). Impact of Genetic Variation in Gene Regulatory Sequences: A Population Genomics Perspective. Frontiers in genetics, 12(660899), p. 660899. Frontiers Media SA 10.3389/fgene.2021.660899

Keiser, Olivia

Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076

Keller, Irene

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644

Liu, Yang; Keller, Irene; Heckel, Gerald (2013). Temporal genetic structure and relatedness in the Tufted Duck Aythya fuligula suggests limited kin association in winter. Ibis, 155(3), pp. 499-507. Wiley-Blackwell 10.1111/ibi.12059

Liu, Y.; Keller, I.; Heckel, G. (2012). Breeding site fidelity and winter admixture in a long-distance migrant, the tufted duck (Aythya fuligula). Heredity, 109(2), pp. 108-116. London: Oliver and Boyd 10.1038/hdy.2012.19

Kindler, Eveline

Kindler, Eveline; Trojnar, Eva; Heckel, Gerald; Otto, Peter H.; Johne, Reimar (2013). Analysis of rotavirus species diversity and evolution including the newly determined full-length genome sequences of rotavirus F and G. Infection, genetics and evolution, 14, pp. 58-67. Elsevier 10.1016/j.meegid.2012.11.015

Kindler, E.; Arlettaz, R.; Heckel, G. (2012). Deep phylogeographic divergence and cytonuclear discordance in the grasshopper Oedaleus decorus. Molecular phylogenetics and evolution, 65(2), pp. 695-704. San Diego, Calif.: Elsevier 10.1016/j.ympev.2012.07.025

Schlegel, M.; Kindler, E.; Essbauer, S.S.; Wolf, R.; Thiel, J.; Groschup, M.H.; Heckel, G.; Oehme, R.M.; Ulrich, R.G. (2012). Tula Virus Infections in the Eurasian Water Vole in Central Europe. Vector-Borne and Zoonotic Diseases, 12(6), pp. 503-513. Larchmont, N.Y.: Mary Ann Liebert 10.1089/vbz.2011.0784

Johne, R.; Heckel, G.; Plenge-Bonig, A.; Kindler, E.; Maresch, C.; Reetz, J.; Schielke, A.; Ulrich, R.G. (2011). Complete genome of a novel hepatitis E virus genotype in Norway rat, Germany [response]. Emerging infectious diseases, 17, pp. 1982-1983. Atlanta, Ga.: U.S. National Center for Infectious Diseases

Mertens, M.; Kindler, E.; Emmerich, P.; Esser, J.; Wagner-Wiening, C.; Wolfel, R.; Petraityte-Burneikiene, R.; Schmidt-Chanasit, J.; Zvirbliene, A.; Groschup, M.H.; Dobler, G.; Pfeffer, M.; Heckel, G.; Ulrich, R.G.; Essbauer, S.S. (2011). Phylogenetic analysis of Puumala virus subtype Bavaria, characterization and diagnostic use of its recombinant nucleocapsid protein. Virus genes, 43(2), pp. 177-191. Boston, Mass.: Nijhoff 10.1007/s11262-011-0620-x

Kirkpatrick, Mark

Peischl, Stephan; Duperret, Isabelle; Kirkpatrick, Mark; Excoffier, Laurent (2013). On the accumulation of deleterious mutations during range expansions. Molecular Ecology, 22(24), pp. 5972-5982. Wiley-Blackwell 10.1111/mec.12524

Peischl, Stephan; Koch, E.; Guerrero, R. F.; Kirkpatrick, Mark (2013). A sequential coalescent algorithm for chromosomal inversions. Heredity, 111(3), pp. 200-209. Oliver and Boyd 10.1038/hdy.2013.38

Peischl, Stephan; Kirkpatrick, Mark (2012). Establishment of new mutations in changing environments. Genetics, 191(3), pp. 895-906. Genetics Society of America 10.1534/genetics.112.140756

Kirkpatrick, Mark; Peischl, Stephan (2012). Evolutionary rescue by beneficial mutations in environments that change in space and time. Proceedings of the Royal Society. Series B - biological sciences, 368(1610), p. 20120082. Royal Society of London 10.1098/rstb.2012.0082

Kittl, Sonja Cornelia

Kittl, Sonja; Heckel, Gerald; Korczak, Bozena; Kuhnert, Peter (2013). Source attribution of human Campylobacter isolates by MLST and fla-typing and association of genotypes with quinolone resistance. PLoS ONE, 8(11), e81796. Public Library of Science 10.1371/journal.pone.0081796

Knop, Eva

Zemanova, Miriam Andela; Broennimann, Olivier; Guisan, Antoine; Knop, Eva; Heckel, Gerald (2018). Slimy invasion: Climatic niche and current and future biogeography of Arion slug invaders. Diversity and Distributions, 24(11), pp. 1627-1640. Wiley-Blackwell 10.1111/ddi.12789

Zemanova, Miriam Andela; Knop, Eva; Heckel, Gerald (2015). Development and characterization of novel microsatellite markers for Arion slug species. Conservation genetics resources, 7(2), pp. 501-503. Springer 10.1007/s12686-014-0406-2

Korczak, Bozena

Kittl, Sonja; Heckel, Gerald; Korczak, Bozena; Kuhnert, Peter (2013). Source attribution of human Campylobacter isolates by MLST and fla-typing and association of genotypes with quinolone resistance. PLoS ONE, 8(11), e81796. Public Library of Science 10.1371/journal.pone.0081796

Kuhnert, Peter

Kittl, Sonja; Heckel, Gerald; Korczak, Bozena; Kuhnert, Peter (2013). Source attribution of human Campylobacter isolates by MLST and fla-typing and association of genotypes with quinolone resistance. PLoS ONE, 8(11), e81796. Public Library of Science 10.1371/journal.pone.0081796

Labutin, Anton

Labutin, Anton; Heckel, Gerald (2024). Genome-wide support for incipient Tula hantavirus species within a single rodent host lineage. Virus evolution, 10(veae002) Oxford University Press 10.1093/ve/veae002

Saxenhofer, Moritz; Labutin, Anton; White, Thomas A.; Heckel, Gerald (2022). Host genetic factors associated with the range limit of a European hantavirus. Molecular Ecology, 31(1), pp. 252-265. Wiley-Blackwell 10.1111/mec.16211

Schmidt, Sabrina; Reil, Daniela; Jeske, Kathrin; Drewes, Stephan; Rosenfeld, Ulrike M.; Fischer, Stefan; Spierling, Nastasja G.; Labutin, Anton; Heckel, Gerald; Jacob, Jens; Ulrich, Rainer G.; Imholt, Christian (2021). Spatial and Temporal Dynamics and Molecular Evolution of Tula orthohantavirus in German Vole Populations. Viruses, 13(6), p. 1132. Molecular Diversity Preservation International MDPI 10.3390/v13061132

Largiadèr, Carlo Rodolfo

Bittner, David; Cossins, Andrew R; Segner, Helmut; Excoffier, Laurent; Largiadèr, Carlo R (2011). Identification of candidate genes and physiological pathways involved in gonad deformation in whitefish (Coregonus spp.) from Lake Thun, Switzerland. International journal of environmental research and public health, 8(7), pp. 2706-33. Basel: Molecular Diversity Preservation International MDPI 10.3390/ijerph8072706

Bittner, D; Excoffier, L; Largiadèr, C R (2010). Patterns of morphological changes and hybridization between sympatric whitefish morphs (Coregonus spp.) in a Swiss lake: a role for eutrophication? Molecular Ecology, 19(10), pp. 2152-67. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04623.x

Giger, Thomas; Excoffier, Laurent; Amstutz, Ursula; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Kelso, Janet; Largiadèr, Carlo R (2008). Population transcriptomics of life-history variation in the genus Salmo. Molecular Ecology, 17(13), pp. 3095-3108. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03820.x

Neuenschwander, Samuel; Largiadèr, Carlo R; Ray, Nicolas; Currat, Mathias; Vonlanthen, Pascal; Excoffier, Laurent (2008). Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Molecular Ecology, 17(3), pp. 757-772. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03621.x

Vonlanthen, Pascal; Excoffier, Laurent; Bittner, David; Persat, H; Neuenschwander, S; Largiadèr, Carlo (2007). Genetic analysis of potential postglacial watershed crossings in central Europe by the bullhead (Cottus gobio L). Molecular Ecology, 16(21), pp. 4572-4584. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03531.x

Giger, Thomas; Amstutz, Ursula; Excoffier, Laurent; Champigneulle, Alexis; Day, Philip; Powell, Richard; Largiadèr, Carlo (2007). The genetic basis of smoltification: Functional genomics tools facilitate the search for the needle in the haystack. In: Harris, Graeme; Millner, Nigel (eds.) Sea Trout: Biology Conservation and Management (pp. 183-195). Chichester: John Wiley & Sons 10.1002/9780470996027.ch13

Giger, Thomas; Excoffier, Laurent; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Powell, Richard; Largiadèr, Carlo R (2006). Life history shapes gene expression in salmonids. Current Biology, 16(8), R281-R282. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.03.053

Li, Hai

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Li, Juan

Li, Juan; Amado, André; Bank, Claudia (2023). Rapid adaptation of recombining populations on tunable fitness landscapes. (In Press). Molecular ecology Wiley 10.1111/mec.16900

Amado, André; Li, Juan; Bank, Claudia (2023). STUN: forward-time simulation on TUnable fitNess landscapes in recombining populations. Bioinformatics advances, 3(1), vbad164. Oxford University Press 10.1093/bioadv/vbad164

Limenitakis, Julien Periclis Jean

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Liu, Yang

Liu, Yang; Keller, Irene; Heckel, Gerald (2013). Temporal genetic structure and relatedness in the Tufted Duck Aythya fuligula suggests limited kin association in winter. Ibis, 155(3), pp. 499-507. Wiley-Blackwell 10.1111/ibi.12059

Liu, Y.; Keller, I.; Heckel, G. (2012). Breeding site fidelity and winter admixture in a long-distance migrant, the tufted duck (Aythya fuligula). Heredity, 109(2), pp. 108-116. London: Oliver and Boyd 10.1038/hdy.2012.19

Liu, Y.; Keller, I.; Heckel, G. (2011). Range-wide genetic population structure in common pochard (Aythya ferina) a potentially important vector of highly pathogenic avian influenza viruses. Ecology, 1(4), pp. 529-545. Washington, D.C.: Ecological Society of America 10.1002/ece3.46

Stovicek, O.; Cizkova, D.; Liu, Y.; Alrecht, T.; Heckel, G.; Vyscocilova, M.; Kresinger, J. (2011). Development of microsatellite markers for a diving duck, the common pochard (Aythya ferina). Conservation genetics resources, 3(3), pp. 573-576. Dordrecht: Springer 10.1007/s12686-011-9407-6

Crottini, Angelica; Galimberti, Andrea; Boto, Alberto; Serra, Lorenzo; Liu, Yang; Yeung, Carol; Yang, Xiaojun; Barbuto, Michela; Casiraghia, Maurizio (2010). Toward a resolution of a taxonomic enigma: First genetic analyses of Paradoxornis webbianus and Paradoxornis alphonsianus (Aves: Paradoxornithidae) from China and Italy. Molecular phylogenetics and evolution, 57(3), pp. 1312-1318. San Diego, Calif.: Elsevier 10.1016/j.ympev.2010.09.009

Liang, Lu; Xu, Bing; Chen, Yanlei; Liu, Yang; Cao, Wuchun; Fang, Liqun; Feng, Limin; Goodchild, Michael F.; Gong, Peng (2010). Combining spatial-temporal and phylogenetic analysis approaches for improved understanding on global H5N1 transmission. PLoS ONE, 5(10), e13575. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0013575

Chen, Shuihua; Chan, Shou-hua; Liu, Yang; Chan, Simba; Fan, Zhongyong; Chen, Cangsong; Yan, Chung-wei; Guo, Dongsheng (2009). A small population and severe threats: status of the Critically Endangered Chinese crested tern Sterna bernsteini. Oryx, 43(2), pp. 209-212. London: Cambridge University Press 10.1017/S0030605308001142

Wang, Ning; Liu, Yang; Zhang, Zeng-wang (2009). Characterization of nine microsatellite loci for a globally vulnerable species, Reeves pheasant (Syrmaticus reevesii). Conservation genetics, 10(5), pp. 1511-1514. Dordrecht: Springer 10.1007/s10592-008-9773-0

Lucek, Kay Jurka Olaf

Marques, David A.; Lucek, Kay; Sousa, Vitor; Excoffier, Laurent; Seehausen, Ole (2019). Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature communications, 10(1) Nature Publishing Group 10.1038/s41467-019-12182-w

Marques, David Alexander; Lucek, Kay Jurka Olaf; Meier, Joana; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. PLoS genetics, 12(2), e1005887. Public Library of Science 10.1371/journal.pgen.1005887

Marques, David Alexander; Lucek, Kay Jurka Olaf; Häsler, Marcel; Feller, Anna Fiona; Meier, Joana; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Molecular Ecology, 26(1), pp. 7-24. Wiley-Blackwell 10.1111/mec.13774

Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644

Maan, Martine

Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644

Macpherson, Andrew

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Marchi, Nina

Marchi, Nina; Kapopoulou, Adamantia; Excoffier, Laurent (2024). Demogenomic inference from spatially and temporally heterogeneous samples. Molecular ecology resources, 24(1), pp. 1-11. Wiley 10.1111/1755-0998.13877

Marchi, Nina; Winkelbach, Laura; Schulz, Ilektra; Brami, Maxime; Hofmanová, Zuzana; Blöcher, Jens; Reyna-Blanco, Carlos S.; Diekmann, Yoan; Thiéry, Alexandre; Kapopoulou, Adamandia; Link, Vivian; Piuz, Valérie; Kreutzer, Susanne; Figarska, Sylwia M.; Ganiatsou, Elissavet; Pukaj, Albert; Struck, Travis J.; Gutenkunst, Ryan N.; Karul, Necmi; Gerritsen, Fokke; ... (2022). The genomic origins of the world’s first farmers. Cell, 185(11), 1842-1859.e18. Cell Press 10.1016/j.cell.2022.04.008

Marchi, Nina; Schlichta, Flávia; Excoffier, Laurent (2021). Demographic inference. Current Biology, 31(6), R276-R279. Cell Press 10.1016/j.cub.2021.01.053

Excoffier, Laurent; Marchi, Nina; Marques, David Alexander; Matthey-Doret, Remi; Gouy, Alexandre; Sousa, Vitor C. (2021). fastsimcoal2 : demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), pp. 4882-4885. Oxford University Press 10.1093/bioinformatics/btab468

Marchi, Nina; Excoffier, Laurent (2020). Gene flow as a simple cause for an excess of high-frequency-derived alleles. Evolutionary applications, 13(9), pp. 2254-2263. Wiley 10.1111/eva.12998

Marques, David Alexander

Meier, Joana; McGee, Matthew D; Marques, David A; Mwaiko, Salome; Kishe, Mary; Wandera, Sylvester; Neumann, Dirk; Mrosso, Hilary; Chapman, Lauren J; Chapman, Colin A; Kaufman, Les; Taabu-Munyaho, Anthony; Wagner, Catherine E; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2023). Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science, 381(6665), eade2833. American Association for the Advancement of Science 10.1126/science.ade2833

Marques, David A.; Lucek, Kay; Sousa, Vitor C.; Excoffier, Laurent; Seehausen, Ole (2021). Reply to "Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin". Nature Communications, 12(1), p. 2807. Springer Nature 10.1038/s41467-021-23096-x

Excoffier, Laurent; Marchi, Nina; Marques, David Alexander; Matthey-Doret, Remi; Gouy, Alexandre; Sousa, Vitor C. (2021). fastsimcoal2 : demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), pp. 4882-4885. Oxford University Press 10.1093/bioinformatics/btab468

Mc Gee, Matthew D.; Borstein, Samuel R.; Meier, Joana I.; Marques, David A.; Mwaiko, Salome; Taabu, Anthony; Kishe, Mary A.; O’Meara, Brian; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2020). The ecological and genomic basis of explosive adaptive radiation. Nature, 586(7827), pp. 75-79. Springer Nature 10.1038/s41586-020-2652-7

Marques, David A.; Lucek, Kay; Sousa, Vitor; Excoffier, Laurent; Seehausen, Ole (2019). Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature communications, 10(1) Nature Publishing Group 10.1038/s41467-019-12182-w

Meier, Joana; Marques, David Alexander; Wagner, Catherine Elise; Excoffier, Laurent; Seehausen, Ole (2018). Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids. Molecular Biology and Evolution, 35(6), pp. 1489-1506. Oxford University Press 10.1093/molbev/msy051

Meier, Joana; Marques, David Alexander; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2017). Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature communications, 8(14363), p. 14363. Nature Publishing Group 10.1038/ncomms14363

Marques, David Alexander; Lucek, Kay Jurka Olaf; Meier, Joana; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. PLoS genetics, 12(2), e1005887. Public Library of Science 10.1371/journal.pgen.1005887

Marques, David Alexander; Lucek, Kay Jurka Olaf; Häsler, Marcel; Feller, Anna Fiona; Meier, Joana; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Molecular Ecology, 26(1), pp. 7-24. Wiley-Blackwell 10.1111/mec.13774

Meier, Joana; Martins Conde e Sousa, Vitor; Marques, David Alexander; Selz, Oliver; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Demographic modeling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology, 26(1), pp. 123-141. Wiley-Blackwell 10.1111/mec.13838

Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644

Marrec, Loïc

Marrec, Loïc; Bank, Claudia; Bertrand, Thibault (2023). Solving the stochastic dynamics of population growth. Ecology and evolution, 13(8), pp. 1-20. John Wiley & Sons, Inc. 10.1002/ece3.10295

Martins Conde e Sousa, Vitor

Marques, David A.; Lucek, Kay; Sousa, Vitor C.; Excoffier, Laurent; Seehausen, Ole (2021). Reply to "Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin". Nature Communications, 12(1), p. 2807. Springer Nature 10.1038/s41467-021-23096-x

Sikora, Martin; Pitulko, Vladimir V.; Sousa, Vitor C.; Allentoft, Morten E.; Vinner, Lasse; Rasmussen, Simon; Margaryan, Ashot; de Barros Damgaard, Peter; de la Fuente, Constanza; Renaud, Gabriel; Yang, Melinda A.; Fu, Qiaomei; Dupanloup, Isabelle; Giampoudakis, Konstantinos; Nogués-Bravo, David; Rahbek, Carsten; Kroonen, Guus; Peyrot, Michaël; McColl, Hugh; Vasilyev, Sergey V.; ... (2019). The population history of northeastern Siberia since the Pleistocene. Nature, 570, pp. 182-188. Macmillan Journals Ltd. https://doi.org/10.1038/s41586-019-1279-z

Kuhlwilm, Martin; Han, Sojung; Sousa, Vitor C.; Excoffier, Laurent; Marques-Bonet, Tomas (2019). Ancient admixture from an extinct ape lineage into bonobos. Nature ecology & evolution, 3(6), pp. 957-965. Springer Nature 10.1038/s41559-019-0881-7

Marques, David A.; Lucek, Kay; Sousa, Vitor; Excoffier, Laurent; Seehausen, Ole (2019). Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature communications, 10(1) Nature Publishing Group 10.1038/s41467-019-12182-w

Pfeifer, Susanne P.; Laurent, Stefan; Martins Conde e Sousa, Vitor; Linnen, Catherine R.; Foll, Matthieu; Excoffier, Laurent; Hoekstra, Hopi E.; Jensen, Jeffrey D. (2018). The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow. Molecular Biology and Evolution, 35(4), pp. 792-806. Oxford University Press 10.1093/molbev/msy004

Sikora, Martin; Seguin-Orlando, Andaine; Martins Conde e Sousa, Vitor; Albrechtsen, Anders; Korneliussen, Thorfinn; Ko, Amy; Rasmussen, Simon; Dupanloup, Isabelle; Nigst, Philip R.; Bosch, Marjolein D.; Renaud, Gabriel; Allentoft, Morten E.; Margaryan, Ashot; Vasilyev, Sergey V.; Veselovskaya, Elizaveta V.; Borutskaya, Svetlana B.; Deviese, Thibaut; Comeskey, Dan; Higham, Tom; Manica, Andrea; ... (2017). Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers. Science, 358(6363), pp. 659-662. American Association for the Advancement of Science 10.1126/science.aao1807

de Manuel, Marc; Kuhlwilm, Martin; Frandsen, Peter; Martins Conde e Sousa, Vitor; Desai, Tariq; Prado-Martinez, Javier; Hernandez-Rodriguez, Jessica; Duperret, Isabelle; Lao, Oscar; Hallast, Pille; Schmidt, Joshua M.; Herdia-Genestar, José María; Benazzo, Andrea; Barbujani, Guido; Peter, Benjamin M.; Kuderna, Lukas F. K.; Casals, Ferran; Angedakin, Samuel; Arandjelovic, Mimi; Boesch, Christophe; ... (2016). Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science, 354(6311), pp. 477-481. American Association for the Advancement of Science 10.1126/science.aag2602

Foote, Andrew David; Vijay, Nagarjun; Ávila-Arcos, María C.; Baird, Robin W.; Durban, John W.; Fumagalli, Matteo; Gibbs, Richard A.; Hanson, M. Bradley; Korneliussen, Thorfinn S.; Martin, Michael D.; Robertson, Kelly M.; Martins Conde e Sousa, Vitor; Vieira, Filipe G.; Vinar, Tomás; Wade, Paul; Worley, Kim C.; Excoffier, Laurent; Morin, Phillip A.; Gilbert, M. Thomas P. and Wolf, Jochen B.W. (2016). Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nature communications, 7(7), p. 11693. Nature Publishing Group 10.1038/ncomms11693

Alves, Isabel; Arenas Busto, Miguel; Currat, Mathias; Sramkova Hanulova, Anna; Martins Conde e Sousa, Vitor; Ray, Nicolas; Excoffier, Laurent (2016). Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution, 33(4), pp. 946-958. Oxford University Press 10.1093/molbev/msv332

Meier, Joana; Martins Conde e Sousa, Vitor; Marques, David Alexander; Selz, Oliver; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Demographic modeling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology, 26(1), pp. 123-141. Wiley-Blackwell 10.1111/mec.13838

Martins Conde e Sousa, Vitor; Peischl, Stephan; Excoffier, Laurent (2014). Impact of range expansions on current human genomic diversity. Current opinion in genetics & development, 29, pp. 22-30. Elsevier 10.1016/j.gde.2014.07.007

Excoffier, Laurent; Dupanloup, Isabelle; Huerta-Sánchez, Emilia; Sousa, Vitor C.; Foll, Matthieu (2013). Robust demographic inference from genomic and SNP data. PLoS genetics, 9(10), e1003905. Public Library of Science 10.1371/journal.pgen.1003905

Matthey-Doret, Rémi

Grummer, Jared A; Booker, Tom R; Matthey-Doret, Remi; Nietlisbach, Pirmin; Thomaz, Andréa T; Whitlock, Michael C (2022). The immediate costs and long-term benefits of assisted gene flow in large populations. Conservation biology, 36(4), e13911. Wiley 10.1111/cobi.13911

Mc Gee, Matthew David

Meier, Joana; McGee, Matthew D; Marques, David A; Mwaiko, Salome; Kishe, Mary; Wandera, Sylvester; Neumann, Dirk; Mrosso, Hilary; Chapman, Lauren J; Chapman, Colin A; Kaufman, Les; Taabu-Munyaho, Anthony; Wagner, Catherine E; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2023). Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science, 381(6665), eade2833. American Association for the Advancement of Science 10.1126/science.ade2833

Mc Gee, Matthew D.; Borstein, Samuel R.; Meier, Joana I.; Marques, David A.; Mwaiko, Salome; Taabu, Anthony; Kishe, Mary A.; O’Meara, Brian; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2020). The ecological and genomic basis of explosive adaptive radiation. Nature, 586(7827), pp. 75-79. Springer Nature 10.1038/s41586-020-2652-7

McCoy, Kathleen

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Meier, Joana

Meier, Joana; McGee, Matthew D; Marques, David A; Mwaiko, Salome; Kishe, Mary; Wandera, Sylvester; Neumann, Dirk; Mrosso, Hilary; Chapman, Lauren J; Chapman, Colin A; Kaufman, Les; Taabu-Munyaho, Anthony; Wagner, Catherine E; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2023). Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science, 381(6665), eade2833. American Association for the Advancement of Science 10.1126/science.ade2833

Mc Gee, Matthew D.; Borstein, Samuel R.; Meier, Joana I.; Marques, David A.; Mwaiko, Salome; Taabu, Anthony; Kishe, Mary A.; O’Meara, Brian; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2020). The ecological and genomic basis of explosive adaptive radiation. Nature, 586(7827), pp. 75-79. Springer Nature 10.1038/s41586-020-2652-7

Meier, Joana; Marques, David Alexander; Wagner, Catherine Elise; Excoffier, Laurent; Seehausen, Ole (2018). Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids. Molecular Biology and Evolution, 35(6), pp. 1489-1506. Oxford University Press 10.1093/molbev/msy051

Meier, Joana; Marques, David Alexander; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2017). Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature communications, 8(14363), p. 14363. Nature Publishing Group 10.1038/ncomms14363

Marques, David Alexander; Lucek, Kay Jurka Olaf; Meier, Joana; Mwaiko, Salome; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. PLoS genetics, 12(2), e1005887. Public Library of Science 10.1371/journal.pgen.1005887

Marques, David Alexander; Lucek, Kay Jurka Olaf; Häsler, Marcel; Feller, Anna Fiona; Meier, Joana; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Molecular Ecology, 26(1), pp. 7-24. Wiley-Blackwell 10.1111/mec.13774

Meier, Joana; Martins Conde e Sousa, Vitor; Marques, David Alexander; Selz, Oliver; Wagner, Catherine; Excoffier, Laurent; Seehausen, Ole (2016). Demographic modeling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology, 26(1), pp. 123-141. Wiley-Blackwell 10.1111/mec.13838

Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644

Moinet, Antoine Frédéric

Moinet, Antoine; Schlichta, Flavia; Peischl, Stephan; Excoffier, Laurent (2022). Strong neutral sweeps occurring during a population contraction. Genetics, 220(4) Oxford University Press 10.1093/genetics/iyac021

Moinet, Antoine; Peischl, Stephan; Excoffier, Laurent (25 August 2021). Strong neutral sweeps occurring during a population contraction (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.25.457712

Mona, Stefano

Mona, Stefano; Ray, Nicolas; Arenas Busto, Miguel; Excoffier, Laurent (2014). Genetic consequences of habitat fragmentation during a range expansion. Heredity, 112(3), pp. 291-299. Oliver and Boyd 10.1038/hdy.2013.105

Arenas Busto, Miguel; Mona, Stefano; Trochet, Audrey; Sramkova Hanulova, Anna; Currat, Mathias; Ray, Nicolas; Chikhi, Lounes; Rasteiro, Rita; Schmeller, Dirk S.; Excoffier, Laurent (2014). The scaling of genetic diversity in a changing and fragmented world. In: Henle, Klaus; Potts, Simon; Kunin, William; Matsinos, Yiannis; Simila, Jukka; Pantis, John; Grobelnik, Vesna; Penev, Lyubomir; Settele, Josef (eds.) Scaling in Ecology and Biodiversity Conservation. Advanced Books (pp. 55-60). Sofia, Bulgaria: Pensoft Publishers

Mooser, Catherine

Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001

Peischl, Stephan

Wang, Xuejing; Peischl, Stephan; Heckel, Gerald (2023). Demographic history and genomic consequences of 10,000 generations of isolation in a wild mammal. Current biology, 33(10), 2051-2062.e4. Cell Press 10.1016/j.cub.2023.04.042

Schlichta, Flávia; Peischl, Stephan; Excoffier, Laurent (2022). The impact of genetic surfing on neutral genomic diversity. Molecular Biology and Evolution, 39(11) Oxford University Press 10.1093/molbev/msac249

Tomasini, Matteo; Peischl, Stephan (2022). The role of spatial structure in multi-deme models of evolutionary rescue. Journal of evolutionary biology, 35(7), pp. 986-1001. Wiley 10.1111/jeb.14018

Moinet, Antoine; Schlichta, Flavia; Peischl, Stephan; Excoffier, Laurent (2022). Strong neutral sweeps occurring during a population contraction. Genetics, 220(4) Oxford University Press 10.1093/genetics/iyac021

Moinet, Antoine; Peischl, Stephan; Excoffier, Laurent (25 August 2021). Strong neutral sweeps occurring during a population contraction (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.25.457712

Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2020). Dissection of the mutation accumulation process during bacterial range expansions. BMC Genomics, 21(1) BioMed Central 10.1186/s12864-020-6676-z

Gilbert, Kimberly J.; Pouyet, Fanny; Excoffier, Laurent; Peischl, Stephan (2020). Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination. Current Biology, 30(1), pp. 101-107. Cell Press 10.1016/j.cub.2019.11.063

Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2019). Mutational and Selective Processes Involved in Evolution during Bacterial Range Expansions. Molecular Biology and Evolution, 36(10), pp. 2313-2327. Oxford University Press 10.1093/molbev/msz148

Gilbert, Kimberly J.; Peischl, Stephan; Excoffier, Laurent (2018). Mutation load dynamics during environmentally-driven range shifts. PLoS genetics, 14(9), pp. 1-18. Public Library of Science 10.1371/journal.pgen.1007450

Tomasini, Matteo; Peischl, Stephan (2018). Establishment of Locally Adapted Mutations Under Divergent Selection. Genetics, 209(3), pp. 885-895. Oxford University Press 10.1534/genetics.118.301104

Popadin, Konstantin; Peischl, Stephan; Garieri, Marco; Sailani, M. Reza; Letourneau, Audrey; Santoni, Federico; Lukowski, Samuel W.; Bazykin, Georgii A.; Nikolaev, Sergey; Meyer, Diogo; Excoffier, Laurent; Reymond, Alexandre; Antonarakis, Stylianos E. (2018). Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection. Genome research, 28(1), pp. 1-10. Cold Spring Harbor, N.Y 10.1101/gr.228411.117

Bosshard, Lars; Dupanloup, Isabelle; Tenaillon, Olivier; Bruggmann, Rémy; Ackermann, Martin; Peischl, Stephan; Excoffier, Laurent (2017). Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics, 207(2), pp. 669-684. Genetics Society of America 10.1534/genetics.117.300144

Peischl, Stephan; Excoffier, Laurent (2017). EXPANSION LOAD. In: Invasion Genetics: the Bakker and Stebbins legacy (pp. 218-231). Wiley 10.1002/9781119072799.ch13

Henn, Brenna M.; Botigué, Laura R.; Peischl, Stephan; Duperret, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Musharoff, Shaila; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2016). Distance from Sub-Saharan Africa Predicts Mutational Load in Diverse Human Genomes. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 113(4), E440-E449. National Academy of Sciences NAS 10.1073/pnas.1510805112

Peischl, Stephan; Dupanloup, Isabelle; Bosshard, Lars; Excoffier, Laurent (2016). Genetic surfing in human populations: from genes to genomes. Current opinion in genetics & development, 41, pp. 53-61. Elsevier 10.1016/j.gde.2016.08.003

Peischl, Stephan; Excoffier, Laurent (2015). Expansion load: recessive mutations and the role of standing genetic variation. Molecular Ecology, 24(9), pp. 2084-2094. Wiley-Blackwell 10.1111/mec.13154

Peischl, Stephan; Kirkpatrick, Mark; Excoffier, Laurent (2015). Expansion Load and the Evolutionary Dynamics of a Species Range. The American naturalist, 185(4), E81-E93. University of Chicago Press 10.1086/680220

Botigué, Laura R.; Henn, Brenna M.; Peischl, Stephan; Dupanloup, Isabelle; Lipatov, Mikhail; Maples, Brian K.; Martin, Alicia R.; Yee, M.C.; Cann, Howard; Snyder, Michael P.; Excoffier, Laurent; Kidd, Jeffrey M.; Bustamante, Carlos D. (2015). The Out of Africa expansion affected accumulation of deleterious alleles in human genomes. American Journal of Physical Anthropology, 156(S60), pp. 90-91. Wiley

Martins Conde e Sousa, Vitor; Peischl, Stephan; Excoffier, Laurent (2014). Impact of range expansions on current human genomic diversity. Current opinion in genetics & development, 29, pp. 22-30. Elsevier 10.1016/j.gde.2014.07.007

Peischl, Stephan; Duperret, Isabelle; Kirkpatrick, Mark; Excoffier, Laurent (2013). On the accumulation of deleterious mutations during range expansions. Molecular Ecology, 22(24), pp. 5972-5982. Wiley-Blackwell 10.1111/mec.12524

Peischl, Stephan; Koch, E.; Guerrero, R. F.; Kirkpatrick, Mark (2013). A sequential coalescent algorithm for chromosomal inversions. Heredity, 111(3), pp. 200-209. Oliver and Boyd 10.1038/hdy.2013.38

Peischl, Stephan; Kirkpatrick, Mark (2012). Establishment of new mutations in changing environments. Genetics, 191(3), pp. 895-906. Genetics Society of America 10.1534/genetics.112.140756

Kirkpatrick, Mark; Peischl, Stephan (2012). Evolutionary rescue by beneficial mutations in environments that change in space and time. Proceedings of the Royal Society. Series B - biological sciences, 368(1610), p. 20120082. Royal Society of London 10.1098/rstb.2012.0082

Schneider, Kristan A.; Peischl, Stephan (2011). Evolution of assortative mating in a population expressing dominance. PLoS ONE, 6(4), e16821. Public Library of Science 10.1371/journal.pone.0016821

Peischl, Stephan; Schneider, Kristan A (2010). EVOLUTION OF DOMINANCE UNDER FREQUENCY-DEPENDENT INTRASPECIFIC COMPETITION IN AN ASSORTATIVELY MATING POPULATION. Evolution, 64(2), pp. 561-582. Wiley 10.1111/j.1558-5646.2009.00839.x

Peischl, Stephan (2010). Dominance and the maintenance of polymorphism in multiallelic migration-selection models with two demes. Theoretical population biology, 78(1), pp. 12-25. Elsevier 10.1016/j.tpb.2010.03.006

Peischl, Stephan; Buerger, Reinhard (2008). Evolution of dominance under frequency-dependent intraspecific competition. Journal of theoretical Biology, 251(2), pp. 210-226. Elsevier 10.1016/j.jtbi.2007.11.014

Piuz Loubier, Valérie Isabelle

Marchi, Nina; Winkelbach, Laura; Schulz, Ilektra; Brami, Maxime; Hofmanová, Zuzana; Blöcher, Jens; Reyna-Blanco, Carlos S.; Diekmann, Yoan; Thiéry, Alexandre; Kapopoulou, Adamandia; Link, Vivian; Piuz, Valérie; Kreutzer, Susanne; Figarska, Sylwia M.; Ganiatsou, Elissavet; Pukaj, Albert; Struck, Travis J.; Gutenkunst, Ryan N.; Karul, Necmi; Gerritsen, Fokke; ... (2022). The genomic origins of the world’s first farmers. Cell, 185(11), 1842-1859.e18. Cell Press 10.1016/j.cell.2022.04.008

Pouyet, Fanny Anne-Laure

Gilbert, Kimberly J.; Pouyet, Fanny; Excoffier, Laurent; Peischl, Stephan (2020). Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination. Current Biology, 30(1), pp. 101-107. Cell Press 10.1016/j.cub.2019.11.063

Pouyet, Fanny; Aeschbacher, Simon; Thiéry, Alexandre Benoit Xavier; Excoffier, Laurent (2018). Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences. eLife, 7, pp. 1-21. eLife Sciences Publications 10.7554/eLife.36317

Rauch, Andri

Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076

Ray, Nicolas

Mona, Stefano; Ray, Nicolas; Arenas Busto, Miguel; Excoffier, Laurent (2014). Genetic consequences of habitat fragmentation during a range expansion. Heredity, 112(3), pp. 291-299. Oliver and Boyd 10.1038/hdy.2013.105

Arenas, Miguel; François, Olivier; Currat, Mathias; Ray, Nicolas; Excoffier, Laurent (2013). Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients. Molecular Biology and Evolution, 30(1), pp. 57-61. Oxford University Press 10.1093/molbev/mss203

Hofer, Tamara; Ray, Nicolas; Wegmann, Daniel; Excoffier, Laurent (2009). Large allele frequency differences between human continental groups are more likely to have occurred by drift during range expansions than by selection. Annals of human genetics, 73(Part 1), pp. 95-108. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2008.00489.x

Janin, Agnès; Lena, Jean-Paul; Ray, Nicolas; Delacourt, Christophe; Allemand, Pascal; Joly, Pierre (2009). Assessing landscape connectivity with calibrated cost-distance modelling: predicting common toad distribution in a context of spreading agriculture. Journal of Applied Ecology, 46(4), pp. 833-841. Oxford: Blackwell Scientific Publications 10.1111/j.1365-2664.2009.01665.x

Ray, Nicolas; Excoffier, Laurent (2009). Inferring past demography using spatially-explicit population genetic models. Human biology, 81(2-3), pp. 141-157. Detroit, Mich.: Wayne State University Press 10.3378/027.081.0303

Neuenschwander, Samuel; Largiadèr, Carlo R; Ray, Nicolas; Currat, Mathias; Vonlanthen, Pascal; Excoffier, Laurent (2008). Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Molecular Ecology, 17(3), pp. 757-772. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03621.x

Currat, M.; Ray, N.; Excoffier, L. (2008). Genetic simulations of population interactions during past human expansions in Europe. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 37-47). Cambridge: McDonald Institute for Archaeological Research

Excoffier, Laurent; Ray, Nicolas (2008). Surfing during population expansions promotes genetic revolutions and structuration. Trends in ecology & evolution, 23(7), pp. 347-351. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2008.04.004

Excoffier, L.; Ray, N.; Currat, M. (2008). Where was Paradise? A simulation study of the spread of early modern humans in heterogeneous environments. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 9-18). Cambridge: McDonald Institute for Archaeological Research

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Tang, Qindong; Burri, Reto; Liu, Yang; Suh, Alexander; Sundev, Gombobaatar; Heckel, Gerald; Schweizer, Manuel (2022). Seasonal migration patterns and the maintenance of evolutionary diversity in a cryptic bird radiation. Molecular Ecology, 31(2), pp. 632-645. Wiley-Blackwell 10.1111/mec.16241

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Spycher, Ben

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Alves, Isabel; Arenas Busto, Miguel; Currat, Mathias; Sramkova Hanulova, Anna; Martins Conde e Sousa, Vitor; Ray, Nicolas; Excoffier, Laurent (2016). Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution, 33(4), pp. 946-958. Oxford University Press 10.1093/molbev/msv332

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Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Günthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American journal of epidemiology, 179(12), pp. 1514-1525. Oxford University Press 10.1093/aje/kwu076

Taborsky, Barbara

Kotrschal, A.; Heckel, G.; Bonfils, D.; Taborsky, B. (2012). Life-stage specific environments in a cichlid fish: implications for inducible maternal effects. Evolutionary ecology, 26(1), pp. 123-137. London: Springer Netherlands 10.1007/s10682-011-9495-5

Tang, Qindong

Tang, Qindong; Burri, Reto; Liu, Yang; Suh, Alexander; Sundev, Gombobaatar; Heckel, Gerald; Schweizer, Manuel (2022). Seasonal migration patterns and the maintenance of evolutionary diversity in a cryptic bird radiation. Molecular Ecology, 31(2), pp. 632-645. Wiley-Blackwell 10.1111/mec.16241

Thiéry, Alexandre Benoit Xavier

Marchi, Nina; Winkelbach, Laura; Schulz, Ilektra; Brami, Maxime; Hofmanová, Zuzana; Blöcher, Jens; Reyna-Blanco, Carlos S.; Diekmann, Yoan; Thiéry, Alexandre; Kapopoulou, Adamandia; Link, Vivian; Piuz, Valérie; Kreutzer, Susanne; Figarska, Sylwia M.; Ganiatsou, Elissavet; Pukaj, Albert; Struck, Travis J.; Gutenkunst, Ryan N.; Karul, Necmi; Gerritsen, Fokke; ... (2022). The genomic origins of the world’s first farmers. Cell, 185(11), 1842-1859.e18. Cell Press 10.1016/j.cell.2022.04.008

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Wegmann, Daniel

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Widmer, Alex

Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine; Boughman, Janette W.; Hohenlohe, Paul A.; Peichel, Catherine L.; Saetre, Glenn-Peter; Bank, Claudia; Brännström, Åke; Brelsford, Alan; Clarkson, Chris S.; Eroukhmanoff, Fabrice; Feder, Jeffrey L.; Fischer, Martin; Foote, Andrew D.; Franchini, Paolo; Jiggins, Chris D.; Jones, Felicity C.; Lindholm, Anna K.; ... (2014). Genomics and the origin of species. Nature Reviews. Genetics, 15(3), pp. 176-192. Natue Publishing Group 10.1038/nrg3644

Yilmaz, Bahtiyar

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Zemanova, Miriam Andela

Zemanova, Miriam Andela; Broennimann, Olivier; Guisan, Antoine; Knop, Eva; Heckel, Gerald (2018). Slimy invasion: Climatic niche and current and future biogeography of Arion slug invaders. Diversity and Distributions, 24(11), pp. 1627-1640. Wiley-Blackwell 10.1111/ddi.12789

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Zimmermann, Jakob

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