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Oliveira, Sandra; Marchi, Nina; Excoffier, Laurent (2024). Assessing the limits of local ancestry inference from small reference panels. Molecular ecology resources, 24(6), e13981. Wiley 10.1111/1755-0998.13981
Wang, Xuejing; Heckel, Gerald (2024). Genome-wide relaxation of selection and the evolution of the island syndrome in Orkney voles. Genome research, 34(6), pp. 851-862. Cold Spring Harbor, N.Y 10.1101/gr.278487.123
Li, Juan; Amado, André; Bank, Claudia (2024). Rapid adaptation of recombining populations on tunable fitness landscapes. Molecular ecology, 33(10), e16900. Wiley 10.1111/mec.16900
Marchi, Nina; Kapopoulou, Adamantia; Excoffier, Laurent (2024). Demogenomic inference from spatially and temporally heterogeneous samples. Molecular ecology resources, 24(1), pp. 1-11. Wiley 10.1111/1755-0998.13877
Labutin, Anton; Heckel, Gerald (2024). Genome-wide support for incipient Tula hantavirus species within a single rodent host lineage. Virus evolution, 10(veae002) Oxford University Press 10.1093/ve/veae002
Blanckaert, Alexandre; Sriram, Vedanth; Bank, Claudia (2023). In search of the Goldilocks zone for hybrid speciation II: hard times for hybrid speciation? Evolution, 77(10), pp. 2162-2172. Wiley 10.1093/evolut/qpad125
Meier, Joana; McGee, Matthew D; Marques, David A; Mwaiko, Salome; Kishe, Mary; Wandera, Sylvester; Neumann, Dirk; Mrosso, Hilary; Chapman, Lauren J; Chapman, Colin A; Kaufman, Les; Taabu-Munyaho, Anthony; Wagner, Catherine E; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2023). Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science, 381(6665), eade2833. American Association for the Advancement of Science 10.1126/science.ade2833
Oliveira, Sandra; Fehn, Anne-Maria; Amorim, Beatriz; Stoneking, Mark; Rocha, Jorge (2023). Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry. Science Advances, 9(38), eadh3822. American Association for the Advancement of Science 10.1126/sciadv.adh3822
Marrec, Loïc; Bank, Claudia; Bertrand, Thibault (2023). Solving the stochastic dynamics of population growth. Ecology and evolution, 13(8), pp. 1-20. John Wiley & Sons, Inc. 10.1002/ece3.10295
Wang, Xuejing; Peischl, Stephan; Heckel, Gerald (2023). Demographic history and genomic consequences of 10,000 generations of isolation in a wild mammal. Current biology, 33(10), 2051-2062.e4. Cell Press 10.1016/j.cub.2023.04.042
Mehl, Calvin; Wylezich, Claudia; Geiger, Christina; Schauerte, Nicole; Mätz-Rensing, Kerstin; Nesseler, Anne; Höper, Dirk; Linnenbrink, Miriam; Beer, Martin; Heckel, Gerald; Ulrich, Rainer G. (2023). Reemergence of Lymphocytic Choriomeningitis Mammarenavirus, Germany. Emerging infectious diseases, 29(3), pp. 631-634. Centers for Disease Control and Prevention 10.3201/eid2903.221822
Stoneking, Mark; Arias, Leonardo; Liu, Dang; Oliveira, Sandra; Pugach, Irina; Rodriguez, Jae Joseph Russell B (2023). Genomic perspectives on human dispersals during the Holocene. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 120(4), e2209475119. National Academy of Sciences NAS 10.1073/pnas.2209475119
Baca, Mateusz; Popović, Danijela; Lemanik, Anna; Bañuls-Cardona, Sandra; Conard, Nicholas J.; Cuenca-Bescós, Gloria; Desclaux, Emmanuel; Fewlass, Helen; Garcia, Jesus T.; Hadravova, Tereza; Heckel, Gerald; Horáček, Ivan; Vlasta Knul, Monika; Lebreton, Loïc; López-García, Juan Manuel; Luzi, Elisa; Marković, Zoran; Mauch Lenardić, Jadranka; Murelaga, Xabier; Noiret, Pierre; ... (2023). Ancient DNA reveals interstadials as a driver of common vole population dynamics during the last glacial period. Journal of biogeography, 50(1), pp. 183-196. Wiley 10.1111/jbi.14521
Amado, André; Li, Juan; Bank, Claudia (2023). STUN: forward-time simulation on TUnable fitNess landscapes in recombining populations. Bioinformatics advances, 3(1), vbad164. Oxford University Press 10.1093/bioadv/vbad164
Schlichta, Flávia; Peischl, Stephan; Excoffier, Laurent (2022). The impact of genetic surfing on neutral genomic diversity. Molecular Biology and Evolution, 39(11) Oxford University Press 10.1093/molbev/msac249
Jeske, Kathrin; Schulz, Jana; Tekemen, Duygu; Balciauskas, Linas; Balciauskiene, Laima; Hiltbrunner, Melanie; Drewes, Stephan; Mayer-Scholl, Anne; Heckel, Gerald; Ulrich, Rainer G. (2022). Cocirculation of Leptospira spp. andmultiple orthohantaviruses in rodents, Lithuania, Northern Europe. Transboundary and emerging diseases, 69(5), e3196-e3201. Wiley 10.1111/tbed.14470
Grummer, Jared A; Booker, Tom R; Matthey-Doret, Remi; Nietlisbach, Pirmin; Thomaz, Andréa T; Whitlock, Michael C (2022). The immediate costs and long-term benefits of assisted gene flow in large populations. Conservation biology, 36(4), e13911. Wiley 10.1111/cobi.13911
Tomasini, Matteo; Peischl, Stephan (2022). The role of spatial structure in multi-deme models of evolutionary rescue. Journal of evolutionary biology, 35(7), pp. 986-1001. Wiley 10.1111/jeb.14018
Johri, Parul; Aquadro, Charles F.; Beaumont, Mark; Charlesworth, Brian; Excoffier, Laurent; Eyre-Walker, Adam; Keightley, Peter D.; Lynch, Michael; McVean, Gil; Payseur, Bret A.; Pfeifer, Susanne P.; Stephan, Wolfgang; Jensen, Jeffrey D. (2022). Recommendations for improving statistical inference in population genomics. PLoS biology, 20(5), pp. 1-23. Public Library of Science 10.1371/journal.pbio.3001669
Moinet, Antoine; Schlichta, Flavia; Peischl, Stephan; Excoffier, Laurent (2022). Strong neutral sweeps occurring during a population contraction. Genetics, 220(4) Oxford University Press 10.1093/genetics/iyac021
Jeske, Kathrin; Herzig-Straschil, Barbara; Răileanu, Cristian; Kunec, Dusan; Tauchmann, Oliver; Emirhar, Duygu; Schmidt, Sabrina; Trimpert, Jakob; Silaghi, Cornelia; Heckel, Gerald; Ulrich, Rainer G.; Drewes, Stephan (2022). Zoonotic pathogen screening of striped field mice (Apodemus agrarius) from Austria. Transboundary and emerging diseases, 69(2), pp. 886-890. Wiley 10.1111/tbed.14015
Saxenhofer, Moritz; Labutin, Anton; White, Thomas A.; Heckel, Gerald (2022). Host genetic factors associated with the range limit of a European hantavirus. Molecular Ecology, 31(1), pp. 252-265. Wiley-Blackwell 10.1111/mec.16211
Tang, Qindong; Burri, Reto; Liu, Yang; Suh, Alexander; Sundev, Gombobaatar; Heckel, Gerald; Schweizer, Manuel (2022). Seasonal migration patterns and the maintenance of evolutionary diversity in a cryptic bird radiation. Molecular Ecology, 31(2), pp. 632-645. Wiley-Blackwell 10.1111/mec.16241
Marchi, Nina; Winkelbach, Laura; Schulz, Ilektra; Brami, Maxime; Hofmanová, Zuzana; Blöcher, Jens; Reyna-Blanco, Carlos S.; Diekmann, Yoan; Thiéry, Alexandre; Kapopoulou, Adamandia; Link, Vivian; Piuz, Valérie; Kreutzer, Susanne; Figarska, Sylwia M.; Ganiatsou, Elissavet; Pukaj, Albert; Struck, Travis J.; Gutenkunst, Ryan N.; Karul, Necmi; Gerritsen, Fokke; ... (2022). The genomic origins of the world’s first farmers. Cell, 185(11), 1842-1859.e18. Cell Press 10.1016/j.cell.2022.04.008
Duarte, Margarida Alexandra; Rodríguez Fernandes, Carlos; Heckel, Gerald; da Luz Mathias, Maria; Bastos-Silveira, Cristiane (2021). Variation and Selection in the Putative Sperm-Binding Region of ZP3 in Muroid Rodents: A Comparison between Cricetids and Murines. Genes, 12(9), p. 1450. MDPI 10.3390/genes12091450
Moinet, Antoine; Peischl, Stephan; Excoffier, Laurent (25 August 2021). Strong neutral sweeps occurring during a population contraction (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.25.457712
Foote, Andrew D.; Gilbert, M. Thomas P.; Gopalakrishnan, Shyam; Louis, Marie; Martin, Michael D.; Morin, Phillip A.; Nykänen, Milaja; Scharff-Olsen, Camilla Hjorth; Excoffier, Laurent (21 August 2021). Evidence of long-term purging of mutation load in killer whale genomes (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2021.08.21.457186
Foote, Andrew D.; Hooper, Rebecca; Alexander, Alana; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Excoffier, Laurent; Fordyce Martin, Sarah L.; Forney, Karin A.; Gerrodette, Tim; Gilbert, M. Thomas P.; Guinet, Christophe; ... (2021). Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology, 30(23), pp. 6162-6177. Wiley-Blackwell 10.1111/mec.16137
Jeske, Kathrin; Emirhar, Duygu; García, Jesús T.; González-Barrio, David; Olea, Pedro P.; Ruiz Fons, Francisco; Schulz, Jana; Mayer-Scholl, Anne; Heckel, Gerald; Ulrich, Rainer G. (2021). FREQUENT LEPTOSPIRA SPP. DETECTION BUT ABSENCE OF TULA ORTHOHANTAVIRUS IN MICROTUS SPP. VOLES, NORTHWESTERN SPAIN. Journal of wildlife diseases, 57(4), pp. 733-742. Wildlife Disease Association 10.7589/JWD-D-20-00109
Joshi, Manas; Kapopoulou, Adamantia; Laurent, Stefan (2021). Impact of Genetic Variation in Gene Regulatory Sequences: A Population Genomics Perspective. Frontiers in genetics, 12(660899), p. 660899. Frontiers Media SA 10.3389/fgene.2021.660899
Schneider, Julia; Hoffmann, Bernd; Fevola, Cristina; Schmidt, Marie Luisa; Imholt, Christian; Fischer, Stefan; Ecke, Frauke; Hörnfeldt, Birger; Magnusson, Magnus; Olsson, Gert E.; Rizzoli, Annapaola; Tagliapietra, Valentina; Chiari, Mario; Reusken, Chantal; Bužan, Elena; Kazimirova, Maria; Stanko, Michal; White, Thomas A.; Reil, Daniela; Obiegala, Anna; ... (2021). Geographical Distribution and Genetic Diversity of Bank Vole Hepaciviruses in Europe. Viruses, 13(7), p. 1258. MDPI 10.3390/v13071258
Schmidt, Sabrina; Reil, Daniela; Jeske, Kathrin; Drewes, Stephan; Rosenfeld, Ulrike M.; Fischer, Stefan; Spierling, Nastasja G.; Labutin, Anton; Heckel, Gerald; Jacob, Jens; Ulrich, Rainer G.; Imholt, Christian (2021). Spatial and Temporal Dynamics and Molecular Evolution of Tula orthohantavirus in German Vole Populations. Viruses, 13(6), p. 1132. MDPI 10.3390/v13061132
Cierniak, Filip; von Arnim, Felicitas; Heckel, Gerald; Ulrich, Rainer G.; Groschup, Martin H.; Eiden, Martin (2021). A Putative Novel Hepatitis E Virus Genotype 3 Subtype Identified in Rabbit, Germany 2016. Viruses, 13(6), p. 1065. MDPI 10.3390/v13061065
Drewes, Stephan; Jeske, Kathrin; Straková, Petra; Balciauskas, Linas; Ryll, René; Balciauskiene, Laima; Kohlhause, David; Schnidrig, Guy-Alain; Hiltbrunner, Melanie; Špakova, Aliona; Insodaite, Rasa; Petraityte-Burneikiene, Rasa; Heckel, Gerald; Ulrich, Rainer G. (2021). Identification of a novel hantavirus strain in the root vole (Microtus oeconomus) in Lithuania, Eastern Europe. Infection, genetics and evolution, 90, p. 104520. Elsevier 10.1016/j.meegid.2020.104520
Currat, Mathias; Quilodrán, Claudio S.; Excoffier, Laurent (2021). Simulations of Human Dispersal and Genetic Diversity. In: Saitou, Naruya (ed.) Evolution of the Human Genome II. Evolutionary Studies (pp. 231-256). Tokyo: Springer Nature 10.1007/978-4-431-56904-6_12
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Choin, Jeremy; Mendoza-Revilla, Javier; Arauna, Lara R.; Cuadros-Espinoza, Sebastian; Cassar, Olivier; Larena, Maximilian; Min-Shan Ko, Albert; Harmant, Christine; Laurent, Romain; Verdu, Paul; Laval, Guillaume; Boland, Anne; Olaso, Robert; Deleuze, Jean-François; Valentin, Frédérique; Ko, Ying-Chin; Jakobsson, Mattias; Gessain, Antoine; Excoffier, Laurent; Stoneking, Mark; ... (2021). Genomic insights into population history and biological adaptation in Oceania. Nature, 592(7855), pp. 583-589. Springer Nature 10.1038/s41586-021-03236-5
Marchi, Nina; Schlichta, Flávia; Excoffier, Laurent (2021). Demographic inference. Current Biology, 31(6), R276-R279. Cell Press 10.1016/j.cub.2021.01.053
Li, Hao-Sen; Huang, Yu-Hao; Chen, Mei-Lan; Ren, Zhan; Qiu, Bo-Yuan; De Clercq, Patrick; Heckel, Gerald; Pang, Hong (2021). Genomic insight into diet adaptation in the biological control agent Cryptolaemus montrouzieri. BMC Genomics, 22(135), pp. 1-12. BioMed Central 10.1186/s12864-021-07442-3
Armstrong, Ellie E.; Khan, Anubhab; Taylor, Ryan W.; Gouy, Alexandre; Greenbaum, Gili; Thiéry, Alexandre; Kang, Jonathan T.; Redondo, Sergio A.; Prost, Stefan; Barsh, Gregory; Kaelin, Christopher; Phalke, Sameer; Chugani, Anup; Gilbert, Martin; Miquelle, Dale; Zachariah, Arun; Borthakur, Udayan; Reddy, Anuradha; Louis, Edward; Ryder, Oliver A.; ... (2021). Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection. Molecular Biology and Evolution, 38(6), pp. 2366-2379. Oxford University Press 10.1093/molbev/msab032
Johri, Parul; Riall, Kellen; Becher, Hannes; Excoffier, Laurent; Charlesworth, Brian; Jensen, Jeffrey D. (2021). The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects. Molecular Biology and Evolution, 38(7), pp. 2986-3003. Oxford University Press 10.1093/molbev/msab050
Jeske, K.; Jacob, J.; Drewes, S.; Pfeffer, M.; Heckel, G.; Ulrich, R. G.; Imholt, C. (2021). Hantavirus–Leptospira coinfections in small mammals from central Germany. Epidemiology and infection, 149(e97), pp. 1-10. Cambridge University Press 10.1017/S0950268821000443
Marques, David A.; Lucek, Kay; Sousa, Vitor C.; Excoffier, Laurent; Seehausen, Ole (2021). Reply to "Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin". Nature Communications, 12(1), p. 2807. Springer Nature 10.1038/s41467-021-23096-x
Excoffier, Laurent; Marchi, Nina; Marques, David Alexander; Matthey-Doret, Remi; Gouy, Alexandre; Sousa, Vitor C. (2021). fastsimcoal2 : demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), pp. 4882-4885. Oxford University Press 10.1093/bioinformatics/btab468
Hiltbrunner, Melanie; Heckel, Gerald (2020). Assessing Genome-Wide Diversity in European Hantaviruses through Sequence Capture from Natural Host Samples. Viruses, 12(7), p. 749. MDPI 10.3390/v12070749
Binder, Florian; Ryll, René; Drewes, Stephan; Jagdmann, Sandra; Reil, Daniela; Hiltbrunner, Melanie; Rosenfeld, Ulrike M.; Imholt, Christian; Jacob, Jens; Heckel, Gerald; Ulrich, Rainer G. (2020). Spatial and Temporal Evolutionary Patterns in Puumala Orthohantavirus (PUUV) S Segment. Pathogens, 9(7) MDPI AG 10.3390/pathogens9070548
Marchi, Nina; Excoffier, Laurent (2020). Gene flow as a simple cause for an excess of high-frequency-derived alleles. Evolutionary applications, 13(9), pp. 2254-2263. Wiley 10.1111/eva.12998
Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2020). Dissection of the mutation accumulation process during bacterial range expansions. BMC Genomics, 21(1) BioMed Central 10.1186/s12864-020-6676-z
Gouy, Alexandre; Excoffier, Laurent (2020). Polygenic Patterns of Adaptive Introgression in Modern Humans Are Mainly Shaped by Response to Pathogens. Molecular Biology and Evolution, 37(5), pp. 1420-1433. Oxford University Press 10.1093/molbev/msz306
Gilbert, Kimberly J.; Pouyet, Fanny; Excoffier, Laurent; Peischl, Stephan (2020). Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination. Current Biology, 30(1), pp. 101-107. Cell Press 10.1016/j.cub.2019.11.063
Mc Gee, Matthew D.; Borstein, Samuel R.; Meier, Joana I.; Marques, David A.; Mwaiko, Salome; Taabu, Anthony; Kishe, Mary A.; O’Meara, Brian; Bruggmann, Rémy; Excoffier, Laurent; Seehausen, Ole (2020). The ecological and genomic basis of explosive adaptive radiation. Nature, 586(7827), pp. 75-79. Springer Nature 10.1038/s41586-020-2652-7
Jeske, Kathrin; Hiltbrunner, Melanie; Drewes, Stephan; Ryll, René; Wenk, Matthias; Špakova, Aliona; Petraitytė‑Burneikienė, Rasa; Heckel, Gerald; Ulrich, Rainer G. (2019). Field vole‑associated Traemmersee hantavirus from Germany represents a novel hantavirus species. Virus genes, 55(6), pp. 848-853. Springer 10.1007/s11262-019-01706-7
Ryll, René; Heckel, Gerald; Corman, Victor M.; Drexler, Jan Felix; Ulrich, Rainer G. (2019). Genomic and spatial variability of a European common vole hepevirus. Archives of virology, 164(11), pp. 2671-2682. Springer 10.1007/s00705-019-04347-1
Wang, Xuejing; Que, Pinjia; Heckel, Gerald; Hu, Junhua; Zhang, Xuecong; Chiang, Chung-Yu; Zhang, Nan; Huang, Qin; Liu, Simin; Martinez, Jonathan; Pagani-Núñez, Emilio; Dingle, Caroline; Leung, Yu Yan; Székely, Tamás; Zhang, Zhengwang; Liu, Yang (2019). Genetic, phenotypic and ecological differentiation suggests incipient speciation in two Charadrius plovers along the Chinese coast. BMC evolutionary biology, 19(1), pp. 1-18. BioMed Central 10.1186/s12862-019-1449-5
Bosshard, Lars; Peischl, Stephan; Ackermann, Martin; Excoffier, Laurent (2019). Mutational and Selective Processes Involved in Evolution during Bacterial Range Expansions. Molecular Biology and Evolution, 36(10), pp. 2313-2327. Oxford University Press 10.1093/molbev/msz148
Sikora, Martin; Pitulko, Vladimir V.; Sousa, Vitor C.; Allentoft, Morten E.; Vinner, Lasse; Rasmussen, Simon; Margaryan, Ashot; de Barros Damgaard, Peter; de la Fuente, Constanza; Renaud, Gabriel; Yang, Melinda A.; Fu, Qiaomei; Dupanloup, Isabelle; Giampoudakis, Konstantinos; Nogués-Bravo, David; Rahbek, Carsten; Kroonen, Guus; Peyrot, Michaël; McColl, Hugh; Vasilyev, Sergey V.; ... (2019). The population history of northeastern Siberia since the Pleistocene. Nature, 570, pp. 182-188. Macmillan Journals Ltd. https://doi.org/10.1038/s41586-019-1279-z
Kuhlwilm, Martin; Han, Sojung; Sousa, Vitor C.; Excoffier, Laurent; Marques-Bonet, Tomas (2019). Ancient admixture from an extinct ape lineage into bonobos. Nature ecology & evolution, 3(6), pp. 957-965. Springer Nature 10.1038/s41559-019-0881-7
Currat, Mathias; Arenas, Miguel; Quilodràn, Claudio S.; Excoffier, Laurent; Ray, Nicolas (2019). SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal. Bioinformatics, 35(21), pp. 4480-4483. Oxford University Press 10.1093/bioinformatics/btz311
Foote, Andrew D.; Martin, Michael D.; Louis, Marie; Pacheco, George; Robertson, Kelly M.; Sinding, Mikkel-Holger S.; Amaral, Ana R.; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dabin, Willy; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Ferguson, Steven H.; ... (2019). Killer whale genomes reveal a complex history of recurrent admixture and vicariance. Molecular Ecology, 28(14), pp. 3427-3444. Wiley-Blackwell 10.1111/mec.15099
Saxenhofer, Moritz; Schmidt, Sabrina; Ulrich, Rainer G.; Heckel, Gerald (2019). Secondary contact between diverged host lineages entails ecological speciation in a European hantavirus. PLoS biology, 17(2), e3000142. Public Library of Science 10.1371/journal.pbio.3000142
Li, Hao-Sen; Heckel, Gerald; Huang, Yu-Hao; Fan, Wei-Jian; Ślipiński, Adam; Pang, Hong (2019). Genomic changes in the biological control agent Cryptolaemus montrouzieri associated with introduction. Evolutionary applications, 12(5), pp. 989-1000. Wiley 10.1111/eva.12774
Pedreschi, Debbi; García-Rodríguez, Oxala; Yannic, Glenn; Cantarello, Elena; Diaz, Anita; Golicher, Duncan; Korstjens, Amanda H.; Heckel, Gerald; Searle, Jeremy B.; Gillingham, Phillipa; Hardouin, Emilie A.; Stewart, John R. (2019). Challenging the European southern refugium hypothesis: Species‐specific structures versus general patterns of genetic diversity and differentiation among small mammals. Global Ecology and Biogeography, 28(2), pp. 262-274. Wiley-Blackwell 10.1111/geb.12828
Marques, David A.; Lucek, Kay; Sousa, Vitor; Excoffier, Laurent; Seehausen, Ole (2019). Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature communications, 10(1) Nature Publishing Group 10.1038/s41467-019-12182-w
Gilbert, Kimberly J.; Peischl, Stephan; Excoffier, Laurent (2018). Mutation load dynamics during environmentally-driven range shifts. PLoS genetics, 14(9), pp. 1-18. Public Library of Science 10.1371/journal.pgen.1007450
Pouyet, Fanny; Aeschbacher, Simon; Thiéry, Alexandre Benoit Xavier; Excoffier, Laurent (2018). Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences. eLife, 7, pp. 1-21. eLife Sciences Publications 10.7554/eLife.36317
Bize, Pierre; Lowe, Imogen; Hürlimann, Mikko Lehto; Heckel, Gerald (2018). Effects of the Mitochondrial and Nuclear Genomes on Nonshivering Thermogenesis in a Wild Derived Rodent. Integrative and comparative biology, 58(3), pp. 532-543. Oxford University Press 10.1093/icb/icy072
Tomasini, Matteo; Peischl, Stephan (2018). Establishment of Locally Adapted Mutations Under Divergent Selection. Genetics, 209(3), pp. 885-895. Oxford University Press 10.1534/genetics.118.301104
Zemanova, Miriam Andela; Broennimann, Olivier; Guisan, Antoine; Knop, Eva; Heckel, Gerald (2018). Slimy invasion: Climatic niche and current and future biogeography of Arion slug invaders. Diversity and Distributions, 24(11), pp. 1627-1640. Wiley-Blackwell 10.1111/ddi.12789
Ryll, R; Eiden, M; Heuser, E; Weinhardt, M; Ziege, M; Höper, D; Groschup, MH; Heckel, Gerald; Johne, R; Ulrich, RG (2018). Hepatitis E virus in feral rabbits along a rural-urban transect in Central Germany. Infection, genetics and evolution, 61(61), pp. 155-159. Elsevier 10.1016/j.meegid.2018.03.019
Pfeifer, Susanne P.; Laurent, Stefan; Martins Conde e Sousa, Vitor; Linnen, Catherine R.; Foll, Matthieu; Excoffier, Laurent; Hoekstra, Hopi E.; Jensen, Jeffrey D. (2018). The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow. Molecular Biology and Evolution, 35(4), pp. 792-806. Oxford University Press 10.1093/molbev/msy004
Meier, Joana; Marques, David Alexander; Wagner, Catherine Elise; Excoffier, Laurent; Seehausen, Ole (2018). Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids. Molecular Biology and Evolution, 35(6), pp. 1489-1506. Oxford University Press 10.1093/molbev/msy051
Popadin, Konstantin; Peischl, Stephan; Garieri, Marco; Sailani, M. Reza; Letourneau, Audrey; Santoni, Federico; Lukowski, Samuel W.; Bazykin, Georgii A.; Nikolaev, Sergey; Meyer, Diogo; Excoffier, Laurent; Reymond, Alexandre; Antonarakis, Stylianos E. (2018). Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection. Genome research, 28(1), pp. 1-10. Cold Spring Harbor, N.Y 10.1101/gr.228411.117
Schmid, Sarah; Neuenschwander, Samuel; Pitteloud, Camille; Heckel, Gerald; Pajkovic, Mila; Arlettaz, Raphaël; Alvarez, Nadir (2018). Spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus revealed by museum genomics. Ecology and evolution, 8(3), pp. 1480-1495. John Wiley & Sons, Inc. 10.1002/ece3.3699
Sikora, Martin; Seguin-Orlando, Andaine; Martins Conde e Sousa, Vitor; Albrechtsen, Anders; Korneliussen, Thorfinn; Ko, Amy; Rasmussen, Simon; Dupanloup, Isabelle; Nigst, Philip R.; Bosch, Marjolein D.; Renaud, Gabriel; Allentoft, Morten E.; Margaryan, Ashot; Vasilyev, Sergey V.; Veselovskaya, Elizaveta V.; Borutskaya, Svetlana B.; Deviese, Thibaut; Comeskey, Dan; Higham, Tom; Manica, Andrea; ... (2017). Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers. Science, 358(6363), pp. 659-662. American Association for the Advancement of Science 10.1126/science.aao1807
Bosshard, Lars; Dupanloup, Isabelle; Tenaillon, Olivier; Bruggmann, Rémy; Ackermann, Martin; Peischl, Stephan; Excoffier, Laurent (2017). Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics, 207(2), pp. 669-684. Genetics Society of America 10.1534/genetics.117.300144
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Kirkpatrick, Mark; Peischl, Stephan (2012). Evolutionary rescue by beneficial mutations in environments that change in space and time. Proceedings of the Royal Society. Series B - biological sciences, 368(1610), p. 20120082. Royal Society of London 10.1098/rstb.2012.0082
Bittner, David; Cossins, Andrew R; Segner, Helmut; Excoffier, Laurent; Largiadèr, Carlo R (2011). Identification of candidate genes and physiological pathways involved in gonad deformation in whitefish (Coregonus spp.) from Lake Thun, Switzerland. International journal of environmental research and public health, 8(7), pp. 2706-33. Basel: MDPI 10.3390/ijerph8072706
Currat, Mathias; Excoffier, Laurent (2011). Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 108(37), pp. 15129-15134. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.1107450108
Excoffier, Laurent; Foll, Matthieu (2011). fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics, 27(9), pp. 1332-1334. Oxford: Oxford University Press 10.1093/bioinformatics/btr124
Fischer, Martin C.; Foll, Matthieu; Excoffier, Laurent; Heckel, Gerald (2011). Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20(7), pp. 1450-1462. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2011.05015.x
Hahne, Joerg; Jenkins, Tania; Halle, Stefan; Heckel, Gerald (2011). Establishment success and resulting fitness consequences for vole dispersers. Oikos, 120(1), pp. 95-105. Oxford: Blackwell 10.1111/j.1600-0706.2010.18589.x
Johne, R.; Heckel, G.; Plenge-Bonig, A.; Kindler, E.; Maresch, C.; Reetz, J.; Schielke, A.; Ulrich, R.G. (2011). Complete genome of a novel hepatitis E virus genotype in Norway rat, Germany [response]. Emerging infectious diseases, 17, pp. 1982-1983. Atlanta, Ga.: U.S. National Center for Infectious Diseases
Laurent, S.; Werzner, A.; Excoffier, L.; Stephan, W. (2011). Approximate Bayesian analysis of Drosophila melanogaster polymorphism data reveals a recent colonization of Southeast Asia. Molecular Biology and Evolution, 28(7), pp. 2041-2051. Oxford: Oxford University Press 10.1093/molbev/msr031
Liu, Y.; Keller, I.; Heckel, G. (2011). Range-wide genetic population structure in common pochard (Aythya ferina) a potentially important vector of highly pathogenic avian influenza viruses. Ecology, 1(4), pp. 529-545. Washington, D.C.: Ecological Society of America 10.1002/ece3.46
Mertens, M.; Kindler, E.; Emmerich, P.; Esser, J.; Wagner-Wiening, C.; Wolfel, R.; Petraityte-Burneikiene, R.; Schmidt-Chanasit, J.; Zvirbliene, A.; Groschup, M.H.; Dobler, G.; Pfeffer, M.; Heckel, G.; Ulrich, R.G.; Essbauer, S.S. (2011). Phylogenetic analysis of Puumala virus subtype Bavaria, characterization and diagnostic use of its recombinant nucleocapsid protein. Virus genes, 43(2), pp. 177-191. Boston, Mass.: Nijhoff 10.1007/s11262-011-0620-x
Moreau, Claudia; Bhérer, Claude; Vézina, Hélène; Jomphe, Michèle; Labuda, Damian; Excoffier, Laurent (2011). Deep Human Genealogies Reveal a Selective Advantage to Be on an Expanding Wave Front. Science, 334(6059), pp. 1148-1150. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1212880
Stovicek, O.; Cizkova, D.; Liu, Y.; Alrecht, T.; Heckel, G.; Vyscocilova, M.; Kresinger, J. (2011). Development of microsatellite markers for a diving duck, the common pochard (Aythya ferina). Conservation genetics resources, 3(3), pp. 573-576. Dordrecht: Springer 10.1007/s12686-011-9407-6
Schneider, Kristan A.; Peischl, Stephan (2011). Evolution of assortative mating in a population expressing dominance. PLoS ONE, 6(4), e16821. Public Library of Science 10.1371/journal.pone.0016821
Bittner, D; Excoffier, L; Largiadèr, C R (2010). Patterns of morphological changes and hybridization between sympatric whitefish morphs (Coregonus spp.) in a Swiss lake: a role for eutrophication? Molecular Ecology, 19(10), pp. 2152-67. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04623.x
Beaumont, Mark A.; Nielsen, Rasmus; Robert, Christian; Hey, Jody; Gaggiotti, Oscar; Knowles, Lacey; Estoup, Arnaud; Panchal, Mahesh; Corander, Jukka; Hickerson, Mike; Sisso, Scott A.; Fagundes, Nelson; Chikhi, Lounes; Beerli, Peter; Vitalis, Renaud; Cornuet, Jean-Marie; Huelsenbeck, John; Foll, Matthieu; Yang, Ziheng; Rousset, Fraçois; ... (2010). In defence of model-based inference in phylogeography. Molecular Ecology, 19(3), pp. 436-446. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2009.04515.x
Crottini, Angelica; Galimberti, Andrea; Boto, Alberto; Serra, Lorenzo; Liu, Yang; Yeung, Carol; Yang, Xiaojun; Barbuto, Michela; Casiraghia, Maurizio (2010). Toward a resolution of a taxonomic enigma: First genetic analyses of Paradoxornis webbianus and Paradoxornis alphonsianus (Aves: Paradoxornithidae) from China and Italy. Molecular phylogenetics and evolution, 57(3), pp. 1312-1318. San Diego, Calif.: Elsevier 10.1016/j.ympev.2010.09.009
Estoup, Arnaud; Baird, Stuart J.E.; Ray, Nicolas; Currat, Mathias; Cornuet, Jean-Marie; Santos, Filipe; Beaumont, Mark A.; Excoffier, Laurent (2010). Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus. Molecular ecology resources, 10(5), pp. 886-901. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02882.x
Excoffier, Laurent; Lischer, Heidi E.L. (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular ecology resources, 10(3), pp. 564-567. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02847.x
Fink, Sabine; Fischer, Martin C.; Excoffier, Laurent; Heckel, Gerald (2010). Genomic scans support repetitive continental colonization events during the rapid radiation of voles (Rodentia: Microtus): the utility of AFLPs versus mitochondrial and nuclear sequence markers. Systematic biology, 59(5), pp. 548-572. Cary, N.C.: Oxford University Press 10.1093/sysbio/syq042
Foll, Matthieu; Fischer, Martin C.; Heckel, Gerald; Excoffier, Laurent (2010). Estimating population structure from AFLP amplification intensity. Molecular Ecology, 19(21), pp. 4638-4647. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04820.x
Francois, Olivier; Currat, Mathias; Ray, Nicolas; Han, Eunjung; Excoffier, Laurent; Novembre, John (2010). Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture. Molecular Biology and Evolution, 27(6), pp. 1257-1268. Oxford: Oxford University Press 10.1093/molbev/msq010
Gaggiotti, Oscar E.; Foll, Matthieu (2010). Quantifying population structure using the F-model. Molecular ecology resources, 10(5), pp. 821-830. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02873.x
Halami, Mohammad Yahya; Dorrestein, Gerry M.; Couteel, Peter; Heckel, Gerald; Muller, Hermann; Johne, Reimar (2010). Whole genome characterization of a novel polyomavirus detected in fatally diseased canary birds. Journal of general virology, 91(12), pp. 3016-3022. Reading: Society for General Microbiology 10.1099/vir.0.023549-0
Henle, Klaus; Kunin, William; Schweiger, Oliver; Schmeller, Dirk S.; Grobelnik, Vesna; Matsinos, Yiannis; Pantis, John; Penev, Lyubomir; Potts, Simon G.; Ring, Irene; Similä, Jukka; Tzanopoulos, Joseph; van den Hove, Sybille; Baguette, Michel; Clobert, Jean; Excoffier, Laurent; Framstad, Erik; Grodzińska-Jurczak, Małgorzata; Lengyel, Szabolcs; Marty, Pascal; ... (2010). Securing the Conservation of Biodiversity across Administrative Levels and Spatial, Temporal, and Ecological Scales - Research Needs and Approaches of the SCALES Project. GAIA - ökologische Perspektiven für Wissenschaft und Gesellschaft / ecological perspectives for science and society, 19(3), pp. 187-193. München: Oekom Verlag
Johne, Reimar; Heckel, Gerald; Plenge-Bönig, Anita; Kindler, Eveline; Maresch, Christina; Reetz, Jochen; Schielke, Anika; Ulrich, Rainer G. (2010). Novel hepatitis E virus genotype in Norway rats, Germany. Emerging infectious diseases, 16(9), pp. 1452-1455. Atlanta, Ga.: U.S. National Center for Infectious Diseases 10.3201/eid1609.100444
Peter, Benjamin P.; Wegmann, Daniel; Excoffier, Laurent (2010). Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Molecular Ecology, 19(21), pp. 4648-4660. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2010.04783.x
Ray, Nicolas; Currat, Mathias; Foll, Matthieu; Excoffier, Laurent (2010). SPLATCHE2: a spatially-explicit simulation framework for complex demography, genetic admixture and recombination. Bioinformatics, 26(23), pp. 2993-2994. Oxford: Oxford University Press 10.1093/bioinformatics/btq579
Ray, Nicolas; Excoffier, Laurent (2010). A first step towards inferring levels of long-distance dispersal during past expansions. Molecular ecology resources, 10(5), pp. 902-914. Oxford: Blackwell Science 10.1111/j.1755-0998.2010.02881.x
Ray, Nicolas; Wegmann, Daniel; Fagundes, Nelson J.R.; Wang, S.; Ruiz-Linares, Andres; Excoffier, Laurent (2010). A statistical evaluation of models for the initial settlement of the American continent emphasizes the importance of gene flow with Asia. Molecular Biology and Evolution, 27(2), pp. 337-345. Oxford: Oxford University Press 10.1093/molbev/msp238
Schmidt-Chanasit, Jonas; Essbauer, Sandra; Petraityte, Rasa; Yoshimatsu, Kumiko; Tackmann, Kirsten; Conraths, Franz J.; Sasnauskas, Kestutis; Arikawa, Jiro; Thomas, Astrid; Pfeffer, Martin; Scharninghausen, Jerrold J.; Splettstoesser, Wolf; Wenk, Matthias; Heckel, Gerald; Ulrich, Rainer G. (2010). Extensive host sharing of Central European Tula virus. Journal of virology, 84(1), pp. 459-474. Baltimore: American Society for Microbiology 10.1128/JVI.01226-09
Wegmann, Daniel; Excoffier, Laurent (2010). Bayesian Inference of the Demographic History of Chimpanzees. Molecular Biology and Evolution, 27(6), pp. 1425-1435. Oxford: Oxford University Press 10.1093/molbev/msq028
Wegmann, Daniel; Leuenberger, Christoph; Neuenschwander, Samuel; Excoffier, Laurent (2010). ABCtoolbox: a versatile toolkit for approximate Bayesian computations. BMC bioinformatics, 11(1), p. 116. London: BioMed Central 10.1186/1471-2105-11-116
Yang, Ning Ning; Mazières, Stephane; Bravi, Claudio; Ray, Nicolas; Wang, Sijia; Burley, Mari-Wyn; Bedoya, Gabriel; Rojas, Winston; Parra, Maria V.; Molina, Julio A.; Gallo, Carla; Poletti, Giovanni; Hill, Kim; Hurtado, Ana M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; Klitz, William; Barrantes, Ramiro; Llop, Elena; Rothhammer, Francisco; ... (2010). Contrasting Patterns of Nuclear and mtDNA Diversity in Native American Populations. Annals of human genetics, 74(6), pp. 525-538. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2010.00608.x
Liang, Lu; Xu, Bing; Chen, Yanlei; Liu, Yang; Cao, Wuchun; Fang, Liqun; Feng, Limin; Goodchild, Michael F.; Gong, Peng (2010). Combining spatial-temporal and phylogenetic analysis approaches for improved understanding on global H5N1 transmission. PLoS ONE, 5(10), e13575. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0013575
Peischl, Stephan; Schneider, Kristan A (2010). EVOLUTION OF DOMINANCE UNDER FREQUENCY-DEPENDENT INTRASPECIFIC COMPETITION IN AN ASSORTATIVELY MATING POPULATION. Evolution, 64(2), pp. 561-582. Wiley 10.1111/j.1558-5646.2009.00839.x
Peischl, Stephan (2010). Dominance and the maintenance of polymorphism in multiallelic migration-selection models with two demes. Theoretical population biology, 78(1), pp. 12-25. Elsevier 10.1016/j.tpb.2010.03.006
Braaker, Sonja; Heckel, Gerald (2009). Transalpine colonisation and partial phylogeographic erosion by dispersal in the common vole Microtus arvalis. Molecular Ecology, 18(11), pp. 2518-2531. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2009.04189.x
Chen, Shuihua; Chan, Shou-hua; Liu, Yang; Chan, Simba; Fan, Zhongyong; Chen, Cangsong; Yan, Chung-wei; Guo, Dongsheng (2009). A small population and severe threats: status of the Critically Endangered Chinese crested tern Sterna bernsteini. Oryx, 43(2), pp. 209-212. London: Cambridge University Press 10.1017/S0030605308001142
Excoffier, Laurent; Foll, Matthieu; Petit, Rémy J. (2009). Genetic Consequences of Range Expansions. Annual review of ecology, evolution, and systematics, 40(1), pp. 481-501. Palo Alto, Calif.: Annual Reviews Inc. 10.1146/annurev.ecolsys.39.110707.173414
Excoffier, Laurent; Hofer, Tamara; Foll, Matthieu (2009). Detecting loci under selection in a hierarchically structured population. Heredity, 103(4), pp. 285-298. London: Oliver and Boyd 10.1038/hdy.2009.74
Gaggiotti, Oscar E.; Bekkevold, Dorte; Jorgensen, Hanne B.H.; Foll, Matthieu; Carvalho, Gary R.; Andre, Carl; Ruzzante, Daniel E. (2009). Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: atlantic herring as a case study. Evolution, 63(11), 2939 - 2951. Hoboken, N.J.: Wiley 10.1111/j.1558-5646.2009.00779.x
Guillot, Gilles; Foll, Matthieu (2009). Correcting for ascertainment bias in the inference of population structure. Bioinformatics, 25(4), pp. 552-554. Oxford: Oxford University Press 10.1093/bioinformatics/btn665
Hofer, Tamara; Ray, Nicolas; Wegmann, Daniel; Excoffier, Laurent (2009). Large allele frequency differences between human continental groups are more likely to have occurred by drift during range expansions than by selection. Annals of human genetics, 73(Part 1), pp. 95-108. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2008.00489.x
Janin, Agnès; Lena, Jean-Paul; Ray, Nicolas; Delacourt, Christophe; Allemand, Pascal; Joly, Pierre (2009). Assessing landscape connectivity with calibrated cost-distance modelling: predicting common toad distribution in a context of spreading agriculture. Journal of Applied Ecology, 46(4), pp. 833-841. Oxford: Blackwell Scientific Publications 10.1111/j.1365-2664.2009.01665.x
Makrythanasis, Periklis; Kapranov, Philipp; Bartoloni, Lucia; Reymond, Alexandre; Deutsch, Samuel; Guigo, Roderic; Denoeud, France; Drenkow, Jorg; Rossier, Colette; Ariani, Francesca; Capra, Valeria; Excoffier, Laurent; Renieri, Alessandra; Gingeras, Thomas R.; Antonarakis, Stylianos E. (2009). Variation in Novel Exons (RACEfrags) of the MECP2 Gene in Rett Syndrome Patients and Controls. Human mutation, 30(9), E866 - E879. Hoboken, N.J.: Wiley-Blackwell 10.1002/humu.21073
Petit, Rémy J.; Excoffier, Laurent (2009). Gene flow and species delimitation. Trends in ecology & evolution, 24(7), pp. 386-393. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2009.02.011
Poloni, Estella S.; Naciri, Yamama; Bucho, Rute; Niba, Régine; Kervaire, Barbara; Excoffier, Laurent; Langaney, André; Sanchez-Mazas, Alicia (2009). Genetic Evidence for Complexity in Ethnic Differentiation and History in East Africa. Annals of human genetics, 73(6), pp. 582-600. Oxford: Wiley-Blackwell 10.1111/j.1469-1809.2009.00541.x
Ray, Nicolas; Excoffier, Laurent (2009). Inferring past demography using spatially-explicit population genetic models. Human biology, 81(2-3), pp. 141-157. Detroit, Mich.: Wayne State University Press 10.3378/027.081.0303
Soland-Reckeweg, Gabriele; Heckel, Gerald; Neumann, Peter; Fluri, Peter; Excoffier, Laurent (2009). Gene flow in admixed populations and implications for the conservation of the Western honeybee, Apis mellifera. Journal of insect conservation, 13(3), pp. 317-328. London: Springer Netherlands 10.1007/s10841-008-9175-0
Ulrich, RG; Heckel, Gerald; Pelz, HJ; Wieler, LH; Nordhoff, M.; Dobler, G.; Freise, J.; Matuschka, FR; Jacob, J.; Schmidt-Chanasit, J.; Gerstengarbe, FW; Jaekel, T.; Suess, J.; Ehlers, B.; Nitsche, A.; Kallies, R.; Johne, R.; Guenther, S.; Henning, K.; Grunow, R.; ... (2009). Nagetiere und Nagetierassoziierte Krankheitserreger (Rodents and rodent associated disease pathogen). Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz, 52(3), pp. 352-369. Heidelberg: Springer-Medizin-Verlag 10.1007/s00103-009-0798-4
Wang, Ning; Liu, Yang; Zhang, Zeng-wang (2009). Characterization of nine microsatellite loci for a globally vulnerable species, Reeves pheasant (Syrmaticus reevesii). Conservation genetics, 10(5), pp. 1511-1514. Dordrecht: Springer 10.1007/s10592-008-9773-0
Wegmann, Daniel; Leuenberger, Christoph; Excoffier, Laurent (2009). Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood. Genetics, 182(4), pp. 1207-1218. Bethesda, Md.: Genetics Society of America 10.1534/genetics.109.102509
Giger, Thomas; Excoffier, Laurent; Amstutz, Ursula; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Kelso, Janet; Largiadèr, Carlo R (2008). Population transcriptomics of life-history variation in the genus Salmo. Molecular Ecology, 17(13), pp. 3095-3108. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03820.x
Neuenschwander, Samuel; Largiadèr, Carlo R; Ray, Nicolas; Currat, Mathias; Vonlanthen, Pascal; Excoffier, Laurent (2008). Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Molecular Ecology, 17(3), pp. 757-772. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03621.x
Currat, M.; Ray, N.; Excoffier, L. (2008). Genetic simulations of population interactions during past human expansions in Europe. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 37-47). Cambridge: McDonald Institute for Archaeological Research
Currat, Mathias; Ruedi, Manuel; Petit, Rémy J.; Excoffier, Laurent (2008). The hidden side of invasions: massive introgression by local genes. Evolution, 62(8), pp. 1908-1920. Hoboken, N.J.: Wiley 10.1111/j.1558-5646.2008.00413.x
Excoffier, Laurent; Ray, Nicolas (2008). Surfing during population expansions promotes genetic revolutions and structuration. Trends in ecology & evolution, 23(7), pp. 347-351. Amsterdam: Elsevier Current Trends 10.1016/j.tree.2008.04.004
Excoffier, L.; Ray, N.; Currat, M. (2008). Where was Paradise? A simulation study of the spread of early modern humans in heterogeneous environments. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 9-18). Cambridge: McDonald Institute for Archaeological Research
Fagundes, Nelson J. R.; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco M.; Bonatto, Sandro L.; Excoffier, Laurent (2008). Reply to Garrigan and Hammer: Ancient lineages and assimilation. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 105(2), E4. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0711261105
Heckel, G.; Fink, S. (2008). Evolution of the arginine vasopressin 1 a receptor and implications for mammalian social behavior. In: Landgraf, Rainer; Neumann, Inga (eds.) Advances in vasopressin and oxytocin - from gene to behavior 170 (pp. 321-330). Amsterdam: Elsevier 10.1016/S0079-6123(08)00426-3
Ray, N.; Currat, M.; Excoffier, L. (2008). Incorporating environmental heterogeneity in spatially-explicit simulations of human genetic diversity. In: Matsumura, S.; Forster, P.; Renfrew, C. (eds.) Simulations, Genetics and Human Prehistory (pp. 103-117). Cambridge: McDonald Institute for Archaeological Research
Ray, Nicolas; Ebener, Steeve (2008). AccessMod 3.0: computing geographic coverage and accessibility to health care services using anisotropic movement of patients. International journal of health geographics, 7(1), p. 63. London: BioMed Central 10.1186/1476-072X-7-63
Ruedi, Manuel; Walter, Simon; Fischer, Martin C.; Scaravelli, Dino; Excoffier, Laurent; Heckel, Gerald (2008). Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology, 17(7), pp. 1801-1814. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2008.03702.x
Schmidt-Chanasit, Jonas; Ölschläger, Stephan; Günther, Stephan; Jaeger, Gerold; Bleymehl, Karoline; Schäd, Susanne G.; Heckel, Gerald; Ulrich, Rainer G.; Doerr, Hans Wilhelm (2008). Molecular Analysis of Varicella-Zoster Virus Strains Circulating in Tanzania Demonstrating the Presence of Genotype M1. Journal of clinical microbiology, 46(10), pp. 3530-3533. Washington, D.C.: American Society for Microbiology 10.1128/JCM.01057-08
Ulrich, R. G.; Schmidt-Chanasit, J.; Schlegel, M.; Jacob, J.; Pelz, H.-J.; Mertens, M.; Wenk, M.; Büchner, T.; Masur, D.; Sevke, K.; Groschup, M. H.; Gerstengarbe, F.-W.; Pfeffer, M.; Oehme, R.; Wegener, W.; Bemmann, M.; Ohlmeyer, L.; Wolf, R.; Zoller, H.; Koch, J.; ... (2008). Network "Rodent-borne pathogens" in Germany: longitudinal studies on the geographical distribution and prevalence of hantavirus infections. Parasitology research, 103(Supplement 1), pp. 121-129. Berlin: Springer 10.1007/s00436-008-1054-9
Walser, Barbara; Heckel, Gerald (2008). Microsatellite markers for the common vole (Microtus arvalis) and their cross-species utility. Conservation genetics, 9(2), pp. 479-481. Dordrecht: Springer Netherlands 10.1007/s10592-007-9355-6
Wang, Sijia; Ray, Nicolas; Rojas, Winston; Parra, Maria V.; Bedoya, Gabriel; Gallo, Carla; Poletti, Giovanni; Mazzotti, Guido; Hill, Kim; Hurtado, Ana M.; Camrena, Beatriz; Nicolini, Humberto; Klitz, William; Barrantes, Ramiro; Molina, Julio A.; Freimer, Nelson B.; Bortolini, Maria Cátira; Salzano, Francisco M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; ... (2008). Geographic Patterns of Genome Admixture in Latin American Mestizos. PLoS genetics, 4(3), e1000037. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1000037
Wegmann, Daniel; Dupanloup, Isabelle; Excoffier, Laurent (2008). Width of Gene Expression Profile Drives Alternative Splicing. PLoS ONE, 3(10), e3587. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0003587
Peischl, Stephan; Buerger, Reinhard (2008). Evolution of dominance under frequency-dependent intraspecific competition. Journal of theoretical biology, 251(2), pp. 210-226. Elsevier 10.1016/j.jtbi.2007.11.014
Vonlanthen, Pascal; Excoffier, Laurent; Bittner, David; Persat, H; Neuenschwander, S; Largiadèr, Carlo (2007). Genetic analysis of potential postglacial watershed crossings in central Europe by the bullhead (Cottus gobio L). Molecular Ecology, 16(21), pp. 4572-4584. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03531.x
Giger, Thomas; Amstutz, Ursula; Excoffier, Laurent; Champigneulle, Alexis; Day, Philip; Powell, Richard; Largiadèr, Carlo (2007). The genetic basis of smoltification: Functional genomics tools facilitate the search for the needle in the haystack. In: Harris, Graeme; Millner, Nigel (eds.) Sea Trout: Biology Conservation and Management (pp. 183-195). Chichester: John Wiley & Sons 10.1002/9780470996027.ch13
Excoffier, Laurent (2007). Analysis of Population Subdivision. In: Balding, David J.; Bishop, Martin; Cannings, Chris (eds.) Handbook of Statistical Genetics (pp. 980-1020). Chichester: John Wiley & Sons
Fagundes, Nelson; Ray, Nicolas; Beaumont, Mark; Neuenschwander, Samuel; Salzano, Francisco; Bonatto, Sandro; Excoffier, Laurent (2007). Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 104(45), pp. 17614-17619. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0708280104
Fink, Sabine; Excoffier, Laurent; Heckel, Gerhard (2007). High variability and non-neutral evolution of the mammalian avpr1a gene. BMC evolutionary biology, 7(1), p. 176. London: BioMed Central 10.1186/1471-2148-7-176
Nagy, Martina; Heckel, Gerald; Voigt, Christian; Mayer, Frieder (2007). Female-biased dispersal and patrilocal kin groups in a mammal with resource-defence polygyny. Proceedings of the Royal Society. Series B - biological sciences, 274(1628), pp. 3019-3025. London: Royal Society of London 10.1098/rspb.2007.1008
Pawlowski, Jan; Fahrni, José; Lecroq, B; Longet, David; Cornelius, N; Excoffier, Laurent; Cedhagen, Tomas; Gooday, Andrew (2007). Bipolar gene flow in deep-sea benthic foraminifera. Molecular Ecology, 16(19), pp. 4089-4096. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03465.x
Schmidt-Chanasit, Jonas; Sturmer, Martin; Hahn, Anke; Schad, Susanne; Gross, Gerd; Ulrich, Rainer; Heckel, Gerald; Doerr, Hans (2007). Novel approach for genotyping varicella-zoster virus strains from Germany. Journal of clinical microbiology, 45(11), pp. 3540-3545. Washington, D.C.: American Society for Microbiology 10.1128/JCM.00979-07
Schweizer, Manuel; Excoffier, Laurent; Heckel, Gerald (2007). Fine-scale genetic structure and dispersal in the common vole (Microtus arvalis). Molecular Ecology, 16(12), pp. 2463-2473. Oxford: Wiley-Blackwell 10.1111/j.1365-294X.2007.03284.x
Wang, Sijia; Lewis, Cecil; Jakobsson, Mattias; Ramachandran, Sohini; Ray, Nicolas; Bedoya, Gabriel; Rojas, Winston; Parra, Maria; Molina, Julio; Gallo, Carla; Mazzotti, Guido; Poletti, Giovanni; Hill, Kim; Hurtado, Ana; Labuda, Damian; Klitz, William; Barrantes, Ramiro; Bortolini, Maria; Salzano, Francisco; Petzl-Erler, Maria; ... (2007). Genetic Variation and Population Structure in Native Americans. PLoS genetics, 3(11), e185. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.0030185
Giger, Thomas; Excoffier, Laurent; Day, Philip J R; Champigneulle, Alexis; Hansen, Michael M; Powell, Richard; Largiadèr, Carlo R (2006). Life history shapes gene expression in salmonids. Current Biology, 16(8), R281-R282. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.03.053
Currat, Mathias; Excoffier, Laurent; Maddison, Wayne; Otto, Sarah; Ray, Nicolas; Whitlock, Michael; Yeaman, Sam (2006). Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans". Science, 313(5784), p. 172. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1122712
Berthier, Pierre; Excoffier, Laurent; Ruedi, Manuel (2006). Replacement of mtDNA and cryptic hybridization between two sibling bat species Myotis myotis and Myotis blythii. Proceedings of the Royal Society. Series B - biological sciences, 273(1605), pp. 3101-3123. London: Royal Society of London 10.1098/rspb.2006.3680
Drake, Jared; Bird, Christine; Nemesh, James; Thomas, Daryl; Newton-Cheh, Christopher; Reymond, Alexandre; Excoffier, Laurent; Attar, Homa; Antonarakis, Stylianos; Dermitzakis, Emmanouil; Hirschhorn, Joel (2006). Conserved noncoding sequences are selectively constrained and not mutation cold spots. Nature genetics, 38(2), pp. 223-227. New York, N.Y.: Nature America 10.1038/ng1710
Excoffier, Laurent (2006). Neandertal genetic diversity: A fresh look from old samples. Current Biology, 16(16), R650-R652. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.07.035
Excoffier, Laurent; Heckel, Gerald (2006). Computer programs for population genetics data analysis: a survival guide. Nature Reviews. Genetics, 7(10), pp. 745-758. London: Natue Publishing Group 10.1038/nrg1904
Fink, Sabine; Excoffier, Laurent; Heckel, Gerald (2006). Mammalian monogamy is not controlled by a single gene. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 103(29), pp. 10956-10960. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.0602380103
Klopfstein, Seraina; Currat, Mathias; Excoffier, Laurent (2006). The fate of mutations surfing on the wave of a range expansion. Molecular Biology and Evolution, 23(3), pp. 482-490. Oxford: Oxford University Press 10.1093/molbev/msj057
Wegmann, Daniel; Currat, Mathias; Excoffier, Laurent (2006). Molecular diversity after a range expansion in heterogeneous environments. Genetics, 174(4), pp. 2009-2020. Bethesda, Md.: Genetics Society of America 10.1534/genetics.106.062851
Behr, Oliver; von Helversen, Otto; Heckel, Gerald; Nagy, Martina; Voigt, Christian; Mayer, Frieder (2006). Territorial songs indicate male quality in the sac-winged bat Saccopteryx bilineata (Emballonuridae). Behavioral Ecology, 17(5), pp. 810-817. New York, N.Y.: Oxford University Press 10.1093/beheco/arl013
Voigt, Christian; Heckel, Gerald; von Helversen, Otto (2006). Conflicts and strategies in the harem polygynous mating system of the sac-winged bat Saccopteryx bilineata. In: Kunz, Thomas; Zubaid, Akbar; McCracken, Gary F. (eds.) Functional and Evolutionary Ecology of Bats (pp. 269-289). Oxford: Oxford University Press
Dupanloup, Isabelle; Kaessmann, Henrik (2006). Evolutionary simulations to detect functional lineage-specific genes. Bioinformatics, 22(15), pp. 1815-1822. Oxford University Press 10.1093/bioinformatics/btl280
Currat, Mathias; Excoffier, Laurent (2004). Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe. PLoS biology, 2(12), e421. Public Library of Science 10.1371/journal.pbio.0020421
Laval, Guillaume; Excoffier, Laurent (2004). SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics, 20(15), pp. 2485-2487. Oxford University Press 10.1093/bioinformatics/bth264
Balloux, François (2001). EASYPOP (Version 1.7): A Computer Program for Population Genetics Simulations. Journal of heredity, 92(3), pp. 301-302. Oxford University Press 10.1093/jhered/92.3.301
