Bernasconi, Enos

Journal Article

Turk, Teja; Labarile, Marco; Braun, Dominique L; Rauch, Andri; Stöckle, Marcel; Cavassini, Matthias; Hoffmann, Matthias; Calmy, Alexandra; Bernasconi, Enos; Notter, Julia; Pasin, Chloé; Günthard, Huldrych F; Kouyos, Roger D (2024). CHARACTERIZATION AND DETERMINANTS OF LONG-TERM IMMUNE RECOVERY UNDER SUPPRESSIVE ANTIRETROVIRAL THERAPY. Journal of acquired immune deficiency syndromes, 96(1), pp. 68-76. Wolters Kluwer Health 10.1097/QAI.0000000000003388

Begré, Lorin; Boyd, Anders; Plissonnier, Marie-Laure; Testoni, Barbara; Salazar-Vizcaya, Luisa; Suter-Riniker, Franziska; Scholtès, Caroline; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Hirsch, Hans H; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Wandeler, Gilles; Zoulim, Fabien; Rauch, Andri (2024). Circulating HBV RNA and hepatitis B core-related antigen trajectories in persons with HIV/HBV coinfection and HBsAg loss on tenofovir therapy. (In Press). The journal of infectious diseases Oxford University Press 10.1093/infdis/jiae189

Damas, José; Munting, Aline; Fellay, Jacques; Haerry, David; Marzolini, Catia; Tarr, Philip E; Steffen, Ana; Braun, Dominique L; Stoeckle, Marcel; Bernasconi, Enos; Tshikung, Olivier Nawej; Fux, Christoph A; Darling, Katharine E A; Béguelin, Charles; Wandeler, Gilles; Cavassini, Matthias; Surial, Bernard (2024). Weight, anthropometric and metabolic changes after discontinuing antiretroviral therapy containing tenofovir alafenamide (TAF) in people with HIV. (In Press). Clinical infectious diseases Oxford University Press 10.1093/cid/ciae189

Thoueille, Paul; Saldanha, Susana Alves; Schaller, Fabian; Choong, Eva; Veuve, François; Munting, Aline; Cavassini, Matthias; Braun, Dominique; Günthard, Huldrych F; Duran Ramirez, Jessy J; Surial, Bernard; Furrer, Hansjakob; Rauch, Andri; Ustero, Pilar; Calmy, Alexandra; Stöckle, Marcel; Di Benedetto, Caroline; Bernasconi, Enos; Schmid, Patrick; Marzolini, Catia; ... (2024). Population Pharmacokinetics of Cabotegravir Following Oral Administration and Long-Acting Intramuscular Injection in Real-World People with HIV. (In Press). Clinical pharmacology and therapeutics Wiley 10.1002/cpt.3240

Zeeb, Marius; Frischknecht, Paul; Huber, Michael; Schenkel, Corinne D; Neumann, Kathrin; Leeman, Christine; Notter, Julia; Rauch, Andri; Stöckle, Marcel; Cavassini, Matthias; Bernasconi, Enos; Braun, Dominique L; Günthard, Huldrych F; Metzner, Karin J; Kouyos, Roger D (2024). Genetic diversity from proviral DNA as a proxy for time since HIV-1 infection. (In Press). The journal of infectious diseases Oxford University Press 10.1093/infdis/jiae149

Hentzien, Maxime; Bonnet, Fabrice; Bernasconi, Enos; Biver, Emmanuel; Braun, Dominique L; Munting, Aline; Leuzinger, Karoline; Leleux, Olivier; Musardo, Stefano; Prendki, Virginie; Schmid, Patrick; Staehelin, Cornelia; Stoeckle, Marcel; Walti, Carla S; Wittkop, Linda; Appay, Victor; Didierlaurent, Arnaud M; Calmy, Alexandra (2024). Immune response to the recombinant herpes zoster vaccine in people living with HIV over 50 years of age compared to non-HIV age-/gender-matched controls (SHINGR'HIV): a multicenter, international, non-randomized clinical trial study protocol. BMC infectious diseases, 24(1) BioMed Central 10.1186/s12879-024-09192-5

Begré, Lorin; Boyd, Anders; Salazar-Vizcaya, Luisa; Suter, Franziska; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Zoulim, Fabien; Wandeler, Gilles; Rauch, Andri (2024). Long-term quantitative hepatitis B surface antigen (HBsAg) trajectories in persons with and without HBsAg loss on tenofovir-containing antiretroviral therapy. HIV medicine, 25(2), pp. 291-298. Wiley 10.1111/hiv.13561

Berton, Mattia; Bettonte, Sara; Stader, Felix; Decosterd, Laurent; Tarr, Philip E; Livio, Françoise; Cavassini, Matthias; Braun, Dominique L; Kusejko, Katharina; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Schmid, Patrick; Battegay, Manuel; Marzolini, Catia (2024). Antiretroviral drug exposure and response in obese and morbidly obese people with HIV: a study combining modelling and Swiss HIV Cohort data. Clinical infectious diseases, 78(1), pp. 98-110. Oxford University Press 10.1093/cid/ciad495

Abela, Irene A; Hauser, Anthony; Schwarzmüller, Magdalena; Pasin, Chloé; Kusejko, Katharina; Epp, Selina; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph A; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Gottschalk, Jochen; Schindler, Eméry; Wepf, Alexander; Marconato, Maddalena; ... (2024). Deciphering factors linked with reduced SARS-CoV-2 susceptibility in the Swiss HIV Cohort Study. (In Press). The journal of infectious diseases Oxford University Press 10.1093/infdis/jiae002

Hentzien, Maxime; Frossard, Jaromil; Kouyos, Roger; Prendki, Virginie; Damas, José; Hofmann, Eveline; Braun, Dominique; Schmid, Patrick; Bernasconi, Enos; Ragozzino, Silvio; Efthimiou, Orestis; Delpierre, Cyrille; Allavena, Clotilde; Bani-Sadr, Firouzé; Calmy, Alexandra (2024). External validation of the Dat'AIDS score: A risk score for predicting 5-year overall mortality in people living with HIV aged 60 years or older. HIV medicine, 25(1), pp. 72-82. Wiley 10.1111/hiv.13534

Hovaguimian, Frédérique; Kouyos, Roger D; Kusejko, Katharina; Schmidt, Axel J; Tarr, Philip E; Bernasconi, Enos; Braun, Dominique L; Calmy, Alexandra; Notter, Julia; Stoeckle, Marcel; Surial, Bernard; Christinet, Vanessa; Darling, Katharine E A; Depmeier, Carsten; Läuchli, Severin; Reinacher, Matthias; Rasi, Manuela; Nicca, Dunja; Bruggmann, Philip; Haerry, David; ... (2024). Incidence of sexually transmitted infections and association with behavioural factors: Time-to-event analysis of a large pre-exposure prophylaxis (PrEP) cohort. HIV medicine, 25(1), pp. 117-128. Wiley 10.1111/hiv.13543

Baumann, Lukas; Braun, Dominique L; Cavassini, Matthias; Stoeckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Haerry, David; Béguelin, Charles; Fux, Christoph A; Wandeler, Gilles; Surial, Bernard; Rauch, Andri (2024). Long-term trends in hepatitis C prevalence, treatment uptake and liver-related events in the Swiss HIV Cohort Study. Liver international, 44(1), pp. 169-179. Wiley 10.1111/liv.15754

Thoueille, Paul; Saldanha, Susana Alves; Schaller, Fabian; Choong, Eva; Munting, Aline; Cavassini, Matthias; Braun, Dominique; Günthard, Huldrych F.; Kusejko, Katharina; Surial, Bernard; Furrer, Hansjakob; Rauch, Andri; Rougemont, Mathieu; Ustero, Pilar; Calmy, Alexandra; Stöckle, Marcel; Marzolini, Catia; Di Benedetto, Caroline; Bernasconi, Enos; Schmid, Patrick; ... (2024). Real-world trough concentrations and effectiveness of long-acting cabotegravir and rilpivirine: a multicenter prospective observational study in Switzerland. The Lancet regional health. Europe, 36, p. 100793. Elsevier 10.1016/j.lanepe.2023.100793

Zeeb, Marius; Tepekule, Burcu; Kusejko, Katharina; Reiber, Claudine; Kälin, Marisa; Bartl, Lena; Notter, Julia; Furrer, Hansjakob; Hoffmann, Matthias; Hirsch, Hans H; Calmy, Alexandra; Cavassini, Matthias; Labhardt, Niklaus D; Bernasconi, Enos; Braun, Dominique L; Günthard, Huldrych F; Kouyos, Roger D; Nemeth, Johannes (2023). Understanding the decline of incident, active tuberculosis in people with HIV in Switzerland. Clinical infectious diseases, 77(9), pp. 1303-1311. Oxford University Press 10.1093/cid/ciad330

Schwenke, Johannes M; Thorball, Christian W; Schöpf, Isabella C; Ryom, Lene; Hasse, Barbara; Lamy, Olivier; Calmy, Alexandra; Wandeler, Gilles; Marzolini, Catia; Kahlert, Christian R; Bernasconi, Enos; Kouyos, Roger; Günthard, Huldrych F; Ledergerber, Bruno; Fellay, Jacques; Burkhalter, Felix; Tarr, Philip E (2023). Association of a Polygenic Risk Score with Osteoporosis in People Living with HIV: The Swiss HIV Cohort Study. The journal of infectious diseases, 228(6), pp. 742-750. Oxford University Press 10.1093/infdis/jiad179

Surial, Bernard; Chammartin, Frédérique; Damas, José; Calmy, Alexandra; Haerry, David; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Fux, Christoph A; Tarr, Philip; Günthard, Huldrych F; Wandeler, Gilles; Rauch, Andri (2023). Impact of integrase inhibitors on cardiovascular disease events in people with HIV starting antiretroviral therapy. Clinical infectious diseases, 77(5), pp. 729-737. Oxford University Press 10.1093/cid/ciad286

Marzolini, Catia; Cavassini, Matthias; Braun, Dominique L; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Schmid, Patrick; Battegay, Manuel; Elzi, Luigia (2023). Effect of SLCO1B1 c.521T>C polymorphism on the lipid response to statins in people living with HIV on a boosted protease inhibitor containing regimen. British journal of clinical pharmacology, 89(9), pp. 2739-2746. Wiley-Blackwell 10.1111/bcp.15754

Paioni, Paolo; Aebi-Popp, Karoline; Martinez de Tejada, Begoña; Rudin, Christoph; Bernasconi, Enos; Braun, Dominique L; Kouyos, Roger; Wagner, Noémie; Crisinel, Pierre Alex; Güsewell, Sabine; Darling, Katharine E A; Duppenthaler, Andrea; Baumann, Marc; Polli, Christian; Fischer, Tina; Kahlert, Christian R (2023). Viral suppression and retention in HIV care during the postpartum period among women living with HIV: a longitudinal multicenter cohort study. The Lancet regional health. Europe, 31, p. 100656. Elsevier 10.1016/j.lanepe.2023.100656

Mugglin, Catrina; Hamusonde, Kalongo; Salazar-Vizcaya, Luisa; Kusejko, Katharina; Nicca, Dunja; Haerry, David; Braun, Dominique L; Stoeckle, Marcel; Kouyos, Roger; Calmy, Alexandra; Cavassini, Matthias; Cipriani, Michela; Bernasconi, Enos; Rauch, Andri; Hachfeld, Anna (2023). Sexual Behaviour and STI Incidence in Sexually Active MSM Living With HIV in Times of COVID-19. Open Forum Infectious Diseases, 10(8), ofad399. Oxford University Press 10.1093/ofid/ofad399

Avery, Emma F; Kleynhans, Julia N; Ledergerber, Bruno; Schoepf, Isabella C; Thorball, Christian W; Kootstra, Neeltje A; Reiss, Peter; Ryom, Lene; Braun, Dominique L; Thurnheer, Maria C; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F; Tarr, Philip E (2023). Leukocyte Count and Coronary Artery Disease Events in People with HIV: A Longitudinal Study. Clinical infectious diseases, 76(11), pp. 1969-1979. Oxford University Press 10.1093/cid/ciad033

Blondet, Fanny; Kraege, Vanessa; Matthias, Cavassini; Fernandez, José Damas; Vollenweider, Peter; Wandeler, Gilles; Hoffman, Matthias; Calmy, Alexandra; Stoeckle, Marcel; Bernasconi, Enos; Hasse, Barbara; Marques-Vidal, Pedro; Mean, Marie (2023). Comparison of five different risk scores to predict incident type 2 diabetes in the Swiss HIV cohort study. AIDS, 37(6), pp. 935-939. Wolters Kluwer Health 10.1097/QAD.0000000000003486

Schoepf, Isabella C; Esteban-Cantos, Andrés; Thorball, Christian W; Rodés, Berta; Reiss, Peter; Rodríguez-Centeno, Javier; Riebensahm, Carlotta; Braun, Dominique L; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Thurnheer, Maria Christine; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F; Arribas, José R; Ledergerber, Bruno and Tarr, Philip E (2023). Epigenetic ageing accelerates before antiretroviral therapy and decelerates after viral suppression in people with HIV in Switzerland: a longitudinal study over 17 years. The Lancet. Healthy longevity, 4(5), e211-e218. Elsevier 10.1016/S2666-7568(23)00037-5

Muri, Jonathan; Cecchinato, Valentina; Cavalli, Andrea; Shanbhag, Akanksha A; Matkovic, Milos; Biggiogero, Maira; Maida, Pier Andrea; Moritz, Jacques; Toscano, Chiara; Ghovehoud, Elaheh; Furlan, Raffaello; Barbic, Franca; Voza, Antonio; De Nadai, Guendalina; Cervia, Carlo; Zurbuchen, Yves; Taeschler, Patrick; Murray, Lilly A; Danelon-Sargenti, Gabriela; Moro, Simone; ... (2023). Autoantibodies against chemokines post-SARS-CoV-2 infection correlate with disease course. Nature immunology, 24(4), pp. 604-611. Nature Publishing Group 10.1038/s41590-023-01445-w

Balakrishna, Suraj; Loosli, Tom; Zaheri, Maryam; Frischknecht, Paul; Huber, Michael; Kusejko, Katharina; Yerly, Sabine; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Wymant, Chris; Fraser, Christophe; Kellam, Paul; Gall, Astrid; Hirsch, Hans H; Stoeckle, Marcel; Rauch, Andri; Cavassini, Matthias; Bernasconi, Enos; Notter, Julia; ... (2023). Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1. The journal of antimicrobial chemotherapy, 78(3), pp. 656-664. Oxford University Press 10.1093/jac/dkac430

Hofmann, Eveline; Surial, Bernard; Boillat-Blanco, Noémie; Günthard, Huldrych F; Stöckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Suter-Riniker, Franziska; Rauch, Andri; Wandeler, Gilles; Béguelin, Charles (2023). HBV REPLICATION DURING TENOFOVIR THERAPY IS FREQUENT IN HIV/HBV-COINFECTION. Clinical infectious diseases, 76(4), pp. 730-733. Oxford University Press 10.1093/cid/ciac823

Labarile, Marco; Loosli, Tom; Zeeb, Marius; Kusejko, Katharina; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph; Günthard, Huldrych F; Pasin, Chloé; Kouyos, Roger D (2023). Quantifying and predicting ongoing Human Immunodeficiency Virus Type 1 (HIV-1) transmission dynamics in Switzerland using a distance-based clustering approach. The journal of infectious diseases, 227(4), pp. 554-564. Oxford University Press 10.1093/infdis/jiac457

Hamusonde, Kalongo; Nicca, Dunja; Günthard, Huldrych F; Stöckle, Marcel; Darling, Katharine Ea; Calmy, Alexandra; Bernasconi, Enos; Haerry, David; Schmid, Patrick; Kouyos, Roger D; Rauch, Andri; Salazar-Vizcaya, Luisa (2023). Triggers of change in sexual behavior among people with HIV: The Swiss U = U statement and Covid-19 compared. The journal of infectious diseases, 227(3), pp. 407-411. Oxford University Press 10.1093/infdis/jiac459

Mauri, Fabio; Cottler-Casanova, Sara; Cavassini, Matthias; Stoeckle, Marcel; Wandeler, Gilles; Schmid, Patrick; Braun, Dominique L; Scherrer, Alexandra; Bernasconi, Enos; Calmy, Alexandra; Abdulcadir, Jasmine (2023). Female Genital Mutilation/Cutting in the Swiss HIV Cohort Study: A Cross-Sectional Study. Journal of immigrant and minority health, 25(1), pp. 136-141. Springer 10.1007/s10903-022-01390-0

Chammartin, Frédérique; Darling, Katharine; Abela, Irene A; Battegay, Manuel; Furrer, Hansjakob; Calmy, Alexandra; Bernasconi, Enos; Schmid, Patrick; Hoffmann, Matthias; Bucher, Heiner C (2022). CD4:CD8 ratio and CD8 cell count and their prognostic relevance for coronary heart disease events and stroke in antiretroviral treated individuals: The Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 91(5), pp. 508-515. Lippincott Williams & Wilkins 10.1097/QAI.0000000000003094

Bosetti, Davide; Mugglin, Catrina; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Braun, Dominique; Notter, Julia; Haerry, David; Hampel, Benjamin; Kovari, Helen; Bernasconi, Enos; Wandeler, Gilles; Rauch, Andri (2022). Risk Factors and Incidence of Sexually Transmitted Infections in the Swiss HIV Cohort Study. Open Forum Infectious Diseases, 9(12) Oxford University Press 10.1093/ofid/ofac592

Kusejko, Katharina; Salazar-Vizcaya, Luisa; Shah, Cyril; Stöckle, Marcel; Béguelin, Charles; Schmid, Patrick; Ongaro, Marie; Darling, Katherine; Bernasconi, Enos; Rauch, Andri; Kouyos, Roger D; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S; Braun, Dominique L (2022). Sustained effect on hepatitis C elimination among men who have sex with men in the Swiss HIV Cohort Study: A systematic re-screening for hepatitis C RNA two years following a nation-wide elimination program. Clinical infectious diseases, 75(10), pp. 1723-1731. Oxford University Press 10.1093/cid/ciac273

Andresen, Sara; Balakrishna, Suraj; Mugglin, Catrina; Schmidt, Axel J; Braun, Dominique L; Marzel, Alex; Doco Lecompte, Thanh; Darling, Katharine Ea; Roth, Jan A; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D; Salazar-Vizcaya, Luisa (2022). Unsupervised machine learning predicts future sexual behaviour and sexually transmitted infections among HIV-positive men who have sex with men. PLoS computational biology, 18(10), e1010559. Public Library of Science 10.1371/journal.pcbi.1010559

Chaudron, Sandra E; Leemann, Christine; Kusejko, Katharina; Nguyen, Huyen; Tschumi, Nadine; Marzel, Alex; Huber, Michael; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Ramette, Alban; Hirsch, Hans H; Rauch, Andri; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Cavassini, Matthias; Metzner, Karin J; Kouyos, Roger D; ... (2022). A systematic molecular epidemiology screen reveals numerous HIV-1 superinfections in the Swiss HIV Cohort Study. The journal of infectious diseases, 226(7), pp. 1256-1266. Oxford University Press 10.1093/infdis/jiac166

Nadeau, Sarah; Thorball, Christian W; Kouyos, Roger; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Rauch, Andri; Hirsch, Hans H; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Fellay, Jacques; Mitov, Venelin; Stadler, Tanja (2022). A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits. Molecular Biology and Evolution, 39(8) Oxford University Press 10.1093/molbev/msac163

Kusejko, Katharina; Tschumi, Nadine; Chaudron, Sandra E; Nguyen, Huyen; Battegay, Manuel; Bernasconi, Enos; Böni, Jürg; Huber, Michael; Calmy, Alexandra; Cavassini, Matthias; Egle, Alexander; Grabmeier-Pfistershammer, Katharina; Haas, Bernhard; Hirsch, Hans; Klimkait, Thomas; Öllinger, Angela; Perreau, Matthieu; Ramette, Alban; Flury, Baharak Babouee; Sarcletti, Mario; ... (2022). Similar but different: Integrated phylogenetic analysis of Austrian and Swiss HIV-1 sequences reveal differences in transmission patterns of the local HIV-1 epidemics. Journal of acquired immune deficiency syndromes, 90(4), e4-e12. Wolters Kluwer Health 10.1097/QAI.0000000000002949

Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella V; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Libby, Peter; Boerwinkle, Eric; McLaren, Paul J; Ballantyne, Christie M; Grinspoon, Steven; Natarajan, Pradeep; Fellay, Jacques (2022). Author Correction: Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV. Scientific Reports, 12(1), p. 11638. Nature Publishing Group 10.1038/s41598-022-16151-0

Nguyen, Huyen; Hampel, Benjamin; Nuñez, David Garcia; Battegay, Manuel; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Fellay, Jacques; Rudolph, Hannes; Huber, Michael; Leuzinger, Karoline; Perreau, Matthieu; Scherrer, Alexandra; Ramette, Alban Nicolas; Yerly, Sabine; Günthard, Huldrych F; Kouyos, Roger D and Kusejko, Katharina (2022). Correction to: Identifying and Characterizing Trans Women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group. Clinical infectious diseases, 74(12), p. 2266. Oxford University Press 10.1093/cid/ciac242

Winter, Babette L; Hovaguimian, Frédérique; Kouyos, Roger D; Schmidt, Axel Jeremias; Bernasconi, Enos; Braun, Dominique L; Calmy, Alexandra; Notter, Julia; Stoeckle, Marcel; Surial, Bernard; Christinet, Vanessa; Cavassini, Matthias; Depmeier, Carsten; Läuchli, Severin; Boffi El Amari, Emmanuelle; Reinacher, Matthias; Rasi, Manuela; Bruggmann, Philip; Haerry, David; Bize, Raphaël; ... (2022). Changes in mental and sexual health among MSM using HIV pre-exposure prophylaxis during the SARS-CoV-2 pandemic: longitudinal analysis of the SwissPrEPared cohort study. Swiss medical weekly, 152, w30192. EMH Schweizerischer Ärzteverlag 10.4414/smw.2022.w30192

Tepekule, Burcu; Kusejko, Katharina; Zeeb, Marius; Tarr, Philip E; Calmy, Alexandra; Battegay, Manuel; Furrer, Hansjakob; Cavassini, Matthias; Bernasconi, Enos; Notter, Julia; Günthard, Huldrych F; Nemeth, Johannes; Kouyos, Roger D (2022). Impact of Latent Tuberculosis Infection on the Incidence of Type 2 Diabetes Mellitus in HIV-Infected Participants in the Swiss HIV Cohort Study. The journal of infectious diseases, 225(12), pp. 2229-2234. Oxford University Press 10.1093/infdis/jiac054

Branca, Mattia; Marinosci, Annalisa; Sculier, Delphine; Wandeler, Gilles; Yerly, Sabine; Stoeckle, Marcel; Bernasconi, Enos; Braun, Dominique L.; Neumann, Kathrin; Vernazza, Pietro; Cavassini, Matthias; Buzzi, Marta; Decosterd, Laurent A.; Schmid, Patrick; Limacher, Andreas; Günthard, Huldrych F.; Metzner, Karin J.; Calmy, Alexandra (2022). Role of the HIV-1 Reservoir to Maintain Viral Suppression in a Simplified Strategy for the Long-Term Management of HIV-1 Infection (The SIMPL’HIV Trial). Frontiers in Virology, 2, p. 855437. Frontiers 10.3389/fviro.2022.855437

Prendki, Virginie; Garin, Nicolas; Stirnemann, Jerome; Combescure, Christophe; Platon, Alexandra; Bernasconi, Enos; Sauter, Thomas; Hautz, Wolf (2022). LOw-dose CT Or Lung UltraSonography versus standard of care based-strategies for the diagnosis of pneumonia in the elderly: protocol for a multicentre randomised controlled trial (OCTOPLUS). BMJ open, 12(5), e055869. BMJ Publishing Group 10.1136/bmjopen-2021-055869

Balakrishna, Suraj; Wolfensberger, Aline; Kachalov, Viacheslav; Roth, Jan A; Kusejko, Katharina; Scherrer, Alexandra U; Furrer, Hansjakob; Hauser, Christoph; Calmy, Alexandra; Cavassini, Matthias; Schmid, Patrick; Bernasconi, Enos; Battegay, Manuel; Günthard, Huldrych F; Kouyos, Roger D (2022). Decreasing incidence and determinants of Bacterial Pneumonia in people with HIV: The Swiss HIV Cohort Study. The journal of infectious diseases, 225(9), pp. 1592-1600. Oxford University Press 10.1093/infdis/jiab573

Schoepf, Isabella C; Thorball, Christian W; Ledergerber, Bruno; Kootstra, Neeltje A; Reiss, Peter; Raffenberg, Marieke; Engel, Tanja; Braun, Dominique L; Hasse, Barbara; Thurnheer, Christine; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Arribas, José R; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F and Tarr, Philip E (2022). Telomere Length Declines In Persons Living With HIV Before Antiretroviral Therapy Start But Not After Viral Suppression: A Longitudinal Study Over >17 Years. The journal of infectious diseases, 225(9), pp. 1581-1591. Oxford University Press 10.1093/infdis/jiab603

Nguyen, Huyen; Hampel, Benjamin; Nuñez, David Garcia; Battegay, Manuel; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Fellay, Jacques; Rudolph, Hannes; Huber, Michael; Leuzinger, Karoline; Perreau, Matthieu; Scherrer, Alexandra; Ramette, Alban Nicolas; Yerly, Sabine; Günthard, Huldrych F; Kouyos, Roger D and Kusejko, Katharina (2022). Identifying and Characterizing Trans women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group. Clinical infectious diseases, 74(8), pp. 1468-1475. Oxford University Press 10.1093/cid/ciab628

Salazar-Vizcaya, Luisa; Kusejko, Katharina; Günthard, Huldrych F; Böni, Jürg; Metzner, Karin J; Braun, Dominique L; Nicca, Dunja; Bernasconi, Enos; Calmy, Alexandra; Darling, Katharine E A; Wandeler, Gilles; Kouyos, Roger D; Rauch, Andri (2022). An Approach to Quantifying the Interaction between Behavioral and Transmission Clusters. Viruses, 14(4) Molecular Diversity Preservation International MDPI 10.3390/v14040784

Scherrer, Alexandra U; Traytel, Anna; Braun, Dominique L; Calmy, Alexandra; Battegay, Manuel; Cavassini, Matthias; Furrer, Hansjakob; Schmid, Patrick; Bernasconi, Enos; Stoeckle, Marcel; Kahlert, Christian; Trkola, Alexandra; Kouyos, Roger D; Tarr, Philip; Marzolini, Catia; Wandeler, Gilles; Fellay, Jacques; Bucher, Heiner; Yerly, Sabine; Suter, Franziska; ... (2022). Cohort Profile Update: The Swiss HIV Cohort Study (SHCS). International journal of epidemiology, 51(1), 33-34j. Oxford University Press 10.1093/ije/dyab141

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Rohrbach, Janine; Stickel, Felix; Schmid, Patrick; Thormann, Wolfgang; Kovari, Helen; Scherrer, Alexandra; Günthard, Huldrych F.; Vuichard, Danielle; Cavassini, Matthias; Ambrosioni, Juan; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri; Swiss HIV Cohort Study, The (2013). Changes in biomarkers of liver disease during successful combination antiretroviral therapy in HIV/HCV-coinfected individuals. Antiviral therapy, 19(2), pp. 149-159. International Medical Press 10.3851/IMP2686

Uçkay, Ilker; Sax, Hugo; Gayet-Ageron, Angèle; Ruef, Christian; Mühlemann, Kathrin; Troillet, Nicolas; Petignat, Christiane; Bernasconi, Enos; Balmelli, Carlo; Widmer, Andreas; Boubaker, Karim; Pittet, Didier (2013). High proportion of healthcare-associated urinary tract infection in the absence of prior exposure to urinary catheter: a cross-sectional study. Antimicrobial Resistance and Infection Control, 2(1), p. 5. BioMed Central 10.1186/2047-2994-2-5

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Scherrer, Alexandra U.; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L.; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F.; Swiss HIV Cohort Study (SHCS), (2012). Long-lasting protection of activity of nucleoside reverse transcriptase inhibitors and protease inhibitors (PIs) by boosted PI containing regimens. PLoS ONE, 7(11), e50307. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0050307

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Scherrer, Alexandra U.; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Cellerai, Cristina; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L.; Bernasconi, Enos; Günthard, Huldrych F.; Swiss HIV Cohort Study, (2012). Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients. PLoS ONE, 7(6), e37983. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0037983

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Hasse, Barbara; Ledergerber, Bruno; Furrer, Hansjakob; Battegay, Manuel; Hirschel, Bernhard; Cavassini, Matthias; Bertisch, Barbara; Bernasconi, Enos; Weber, Rainer; Swiss HIV Cohort, Study (2011). Morbidity and aging in HIV-infected persons: the Swiss HIV cohort study. Clinical infectious diseases, 53(11), pp. 1130-9. Cary, N.C.: Oxford University Press 10.1093/cid/cir626

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Ortiz, Millán; Poloni, Estella S; Furrer, Hansjakob; Kovari, Helen; Martinez, Raquel; Arnedo, Mireia; Elzi, Luigia; Bernasconi, Enos; Vernazza, Pietro; Hirschel, Bernard; Cavassini, Matthias; Ledergerber, Bruno; Günthard, Huldrych F; Telenti, Amalio; Tarr, Philip E; Swiss HIV Cohort Study, (2011). No longitudinal mitochondrial DNA sequence changes in HIV-infected individuals with and without lipoatrophy. Journal of infectious diseases, 203(5), pp. 620-4. Cary, N.C.: Oxford University Press 10.1093/infdis/jiq106

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Wyl, Viktor von; Gianella, Sara; Fischer, Marek; Niederoest, Barbara; Kuster, Herbert; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Rauch, Andri; Hirschel, Bernard; Vernazza, Pietro; Weber, Rainer; Joos, Beda; Günthard, Huldrych F; Swiss HIV Cohort Study-SHCS, (2011). Early antiretroviral therapy during primary HIV-1 infection results in a transient reduction of the viral setpoint upon treatment interruption. PLoS ONE, 6(11), e27463. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0027463

Scherrer, Alexandra U; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Bürgisser, Philippe; Rauch, Andri; Hirschel, Bernard; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Held, Leonhard; Günthard, Huldrych F; Swiss HIV Cohort, Study (2011). Improved virological outcome in White patients infected with HIV-1 non-B subtypes compared to subtype B. Clinical infectious diseases, 53(11), pp. 1143-52. Cary, N.C.: Oxford University Press 10.1093/cid/cir669

Boillat Blanco, Noémie; Probst, Arnold; Da Costa, Vreneli Waelti; Giulieri, Stefano; Bernasconi, Enos; Calmy, Alexandra; Elzi, Luigia; Rauch, Andri; Weber, Rainer; Bertisch, Barbara; Cavassini, Matthias; Bochud, Pierre-Yves (2011). Impact of a nurse vaccination program on hepatitis B immunity in a Swiss HIV clinic. Journal of acquired immune deficiency syndromes JAIDS, 58(5), pp. 472-4. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318237915e

Gianella, Sara; von Wyl, Viktor; Fischer, Marek; Niederoest, Barbara; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Rauch, Andri; Hirschel, Bernard; Vernazza, Pietro; Weber, Rainer; Joos, Beda; Günthard, Huldrych F; Swiss HIV Cohort Study, (2011). Effect of early antiretroviral therapy during primary HIV-1 infection on cell-associated HIV-1 DNA and plasma HIV-1 RNA. Antiviral therapy, 16(4), pp. 535-45. London: International Medical Press 10.3851/IMP1776

Nguyen, Alain; Calmy, Alexandra; Delhumeau, Cecile; Mercier, Isabelle; Cavassini, Matthias; Mello, Aurelie F; Elzi, Luigia; Rauch, Andri; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard (2011). A randomized cross-over study to compare raltegravir and efavirenz (SWITCH-ER study). AIDS, 25(12), pp. 1481-7. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e328348dab0

Rotger, Margalida; Dalmau, Judith; Rauch, Andri; McLaren, Paul; Bosinger, Steven E; Martinez, Raquel; Sandler, Netanya G; Roque, Annelys; Liebner, Julia; Battegay, Manuel; Bernasconi, Enos; Descombes, Patrick; Erkizia, Itziar; Fellay, Jacques; Hirschel, Bernard; Miró, Jose M; Palou, Eduard; Hoffmann, Matthias; Massanella, Marta; Blanco, Julià; ... (2011). Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque. Journal of clinical investigation, 121(6), pp. 2391-400. Ann Arbor, Mich.: American Society for Clinical Investigation 10.1172/JCI45235

Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Rieder, Philip; Joos, Beda; Taffé, Patrick; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Rauch, Andri; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F; ... (2011). Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clinical infectious diseases, 52(4), pp. 532-9. Cary, N.C.: Oxford University Press 10.1093/cid/ciq164

Nguyen, Alain; Calmy, Alexandra; Delhumeau, Cécile; Mercier, Isabelle K; Cavassini, Matthias; Fayet-Mello, Aurélie; Elzi, Luigia; Genné, Daniel; Rauch, Andri; Bernasconi, Enos; Hirschel, Bernard; Swiss HIV Cohort Study, (2011). A randomized crossover study to compare efavirenz and etravirine treatment. AIDS, 25(1), pp. 57-63. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833f9f63

Scherrer, Alexandra U; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Bürgisser, Philippe; Garzoni, Christian; Hirschel, Bernard; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Swiss HIV Cohort Study (SHCS), (2011). Viral suppression rates in salvage treatment with raltegravir improved with the administration of genotypic partially active or inactive nucleoside/tide reverse transcriptase inhibitors. Journal of acquired immune deficiency syndromes JAIDS, 57(1), pp. 24-31. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e318211925e

Fehr, Jan; Glass, Tracy R; Louvel, Séverine; Hamy, François; Hirsch, Hans H; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Bürgisser, Philippe; Cavassini, Matthias; Fux, Christoph A; Hirschel, Bernard; Vernazza, Pietro; Martinetti, Gladys; Bernasconi, Enos; Günthard, Huldrych F; Battegay, Manuel; Bucher, Heiner C; Klimkait, Thomas and Swiss HIV Cohort Study, (2011). Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals--the Swiss HIV Cohort Study. Journal of translational medicine, 9, p. 14. London: BioMed Central 10.1186/1479-5876-9-14

Sax, Hugo; Uçkay, Ilker; Balmelli, Carlo; Bernasconi, Enos; Boubaker, Karim; Mühlemann, Kathrin; Ruef, Christian; Troillet, Nicolas; Widmer, Andreas; Zanetti, Giorgio; Pittet, Didier (2011). Overall burden of healthcare-associated infections among surgical patients. Results of a national study. Annals of surgery, 253(2), pp. 365-70. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/SLA.0b013e318202fda9

Keiser, Olivia; Spoerri, Adrian; Brinkhof, Martin W G; Hasse, Barbara; Gayet-Ageron, Angéle; Tissot, Frédéric; Christen, Anna; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Egger, Matthias (2010). Suicide in HIV-Infected Individuals and the General Population in Switzerland, 1988-2008. American journal of psychiatry, 167(2), pp. 143-150. Washington, D.C.: American Psychiatric Association 10.1176/appi.ajp.2009.09050651

Rotger, Margalida; Gsponer, Thomas; Martinez, Raquel; Taffé, Patrick; Elzi, Luigia; Vernazza, Pietro; Cavassini, Matthias; Bernasconi, Enos; Hirschel, Bernard; Furrer, Hansjakob; Weber, Rainer; Ledergerber, Bruno; Egger, Matthias; Telenti, Amalio; Tarr, Philip E (2010). Impact of single nucleotide polymorphisms and of clinical risk factors on new-onset diabetes mellitus in HIV-infected individuals. Clinical infectious diseases, 51(9), pp. 1090-1098. Cary, N.C.: The University of Chicago Press 10.1086/656630

Rohrbach, Janine; Robinson, Nicola; Harcourt, Gillian; Hammond, Emma; Gaudieri, Silvana; Gorgievski, Meri; Telenti, Amalio; Keiser, Olivia; Günthard, Huldrych F; Hirschel, Bernhard; Hoffmann, Matthias; Bernasconi, Enos; Battegay, Manuel; Furrer, Hansjakob; Klenerman, Paul; Rauch, Andri (2010). Cellular immune responses to HCV core increase and HCV RNA levels decrease during successful antiretroviral therapy. Gut, 59(9), pp. 1252-1258. London: BMJ Publishing Group 10.1136/gut.2009.205971

Thurnheer, Maria Christine; Weber, Rainer; Toutous-Trellu, Laurence; Cavassini, Matthias; Elzi, Luigia; Schmid, Patrick; Bernasconi, Enos; Christen, Anna B; Zwahlen, Marcel; Furrer, Hansjakob (2010). Occurrence, risk factors, diagnosis and treatment of syphilis in the prospective observational Swiss HIV Cohort Study. AIDS, 24(12), pp. 1907-1916. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/QAD.0b013e32833bfe21

Hasse, Barbara; Ledergerber, Bruno; Hirschel, Bernard; Vernazza, Pietro; Glass, Tracy R; Jeannin, Andre; Evison, John-Marc; Elzi, Luigia; Cavassini, Matthias; Bernasconi, Enos; Nicca, Dunja; Weber, Rainer; Swiss HIV Cohort, Study (2010). Frequency and determinants of unprotected sex among HIV-infected persons: the Swiss HIV cohort study. Clinical infectious diseases, 51(11), pp. 1314-22. Cary, N.C.: The University of Chicago Press 10.1086/656809

Alizon, Samuel; von Wyl, Viktor; Stadler, Tanja; Kouyos, Roger D; Yerly, Sabine; Hirschel, Bernard; Böni, Jürg; Shah, Cyril; Klimkait, Thomas; Furrer, Hansjakob; Rauch, Andri; Vernazza, Pietro L; Bernasconi, Enos; Battegay, Manuel; Bürgisser, Philippe; Telenti, Amalio; Günthard, Huldrych F; Bonhoeffer, Sebastian; Swiss HIV Cohort Study, (2010). Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS pathogens, 6(9), e1001123. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1001123

Marzolini, Catia; Elzi, Luigia; Gibbons, Sara; Weber, Rainer; Fux, Christoph; Furrer, Hansjakob; Chave, Jean-Philippe; Cavassini, Matthias; Bernasconi, Enos; Calmy, Alexandra; Vernazza, Pietro; Khoo, Saye; Ledergerber, Bruno; Back, David; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Prevalence of comedications and effect of potential drug-drug interactions in the Swiss HIV Cohort Study. Antiviral therapy, 15(3), pp. 413-23. London: International Medical Press 10.3851/IMP1540

Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Taffé, Patrick; Shah, Cyril; Bürgisser, Philippe; Klimkait, Thomas; Weber, Rainer; Hirschel, Bernard; Cavassini, Matthias; Furrer, Hansjakob; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Rickenbach, Martin; Ledergerber, Bruno; Bonhoeffer, Sebastian; Günthard, Huldrych F (2010). Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. Journal of infectious diseases, 201(10), pp. 1488-97. Cary, N.C.: The University of Chicago Press 10.1086/651951

Elzi, Luigia; Marzolini, Catia; Furrer, Hansjakob; Ledergerber, Bruno; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Treatment modification in human immunodeficiency virus-infected individuals starting combination antiretroviral therapy between 2005 and 2008. Archives of internal medicine, 170(1), pp. 57-65. Chicago, Ill.: American Medical Association 10.1001/archinternmed.2009.432

Rauch, Andri; Kutalik, Zoltán; Descombes, Patrick; Cai, Tao; Di Iulio, Julia; Mueller, Tobias; Bochud, Murielle; Battegay, Manuel; Bernasconi, Enos; Borovicka, Jan; Colombo, Sara; Cerny, Andreas; Dufour, Jean-François; Furrer, Hansjakob; Günthard, Huldrych F; Heim, Markus; Hirschel, Bernard; Malinverni, Raffaele; Moradpour, Darius; Müllhaupt, Beat; ... (2010). Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study. Gastroenterology, 138(4), 1338-45, 1345.e1-7. Philadelphia, Pa.: Elsevier 10.1053/j.gastro.2009.12.056

Glass, Tracy R; Battegay, Manuel; Cavassini, Matthias; De Geest, Sabina; Furrer, Hansjakob; Vernazza, Pietro L; Hirschel, Bernard; Bernasconi, Enos; Rickenbach, Martin; Günthard, Huldrych F; Bucher, Heiner C; Swiss HIV Cohort Study, (2010). Longitudinal analysis of patterns and predictors of changes in self-reported adherence to antiretroviral therapy: Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 54(2), pp. 197-203. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e3181ca48bf

Osih, Regina B; Taffé, Patrick; Rickenbach, Martin; Gayet-Ageron, Angèle; Elzi, Luigia; Fux, Christoph; Opravil, Milos; Bernasconi, Enos; Schmid, Patrick; Günthard, Huldrych F; Cavassini, Matthias; Swiss HIV Cohort Study, (2010). Outcomes of patients on dual-boosted PI regimens: experience of the Swiss HIV cohort study. AIDS research and human retroviruses, 26(11), pp. 1239-46. New York, N.Y.: Mary Ann Liebert 10.1089/aid.2010.0070

Bucher, Heiner C; Rickenbach, Martin; Young, Jim; Glass, Tracy R; Vallet, Yannick; Bernasconi, Enos; Cavassini, Matthias; Fux, Christoph; Schiffer, Véronique; Vernazza, Pietro; Weber, Rainer; Battegay, Manuel; Swiss HIV Cohort Study, (2010). Randomized trial of a computerized coronary heart disease risk assessment tool in HIV-infected patients receiving combination antiretroviral therapy. Antiviral therapy, 15(1), pp. 31-40. London: International Medical Press 10.3851/IMP1475

Opravil, Milos; Klimkait, Thomas; Louvel, Severine; Wolf, Eva; Battegay, Manuel; Fux, Christoph A; Bernasconi, Enos; Vogel, Martin; Speck, Roberto; Weber, Rainer; Swiss HIV Cohort Study, (2010). Prior therapy influences the efficacy of lamivudine monotherapy in patients with lamivudine-resistant HIV-1 infection. Journal of acquired immune deficiency syndromes JAIDS, 54(1), pp. 51-8. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/QAI.0b013e3181bef889

Kovari, Helen; Ledergerber, Bruno; Battegay, Manuel; Rauch, Andri; Hirschel, Bernard; Foguena, Alain Kenfak; Vernazza, Pietro; Bernasconi, Enos; Mueller, Nicolas J; Weber, Rainer (2010). Incidence and risk factors for chronic elevation of alanine aminotransferase levels in HIV-infected persons without hepatitis b or c virus co-infection. Clinical infectious diseases, 50(4), pp. 502-11. Cary, N.C.: The University of Chicago Press 10.1086/649922

Ferry, Tristan; Hirschel, Bernard; Dang, Thanh; Meylan, Pascal; Delhumeau, Cécile; Rauch, Andri; Weber, Rainer; Elzi, Luigia; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Swiss HIV Cohort, Study (2010). Infrequent replication of parvovirus B19 and erythrovirus genotypes 2 and 3 among HIV-infected patients with chronic anemia. Clinical infectious diseases, 50(1), pp. 115-8. Cary, N.C.: The University of Chicago Press 10.1086/649004

Young, Jim; Bucher, Heiner C; Guenthard, Huldrych F; Rickenbach, Martin; Fux, Christoph A; Hirschel, Bernard; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel (2009). Virological and immunological responses to efavirenz or boosted lopinavir as first-line therapy for patients with HIV. Antiviral therapy, 14(6), pp. 771-9. London: International Medical Press 10.3851/IMP1291

Elzi, Luigia; Kaufmann, Gilbert; Weber, Rainer; Fux, Christoph A; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel (2009). Discontinuation of enfuvirtide in heavily pretreated HIV-infected individuals. HIV clinical trials, 10(4), pp. 207-14. St. Louis, Mo.: Thomas Land Publishers 10.1310/hct1004-207

Khanna, Nina; Elzi, Luigia; Mueller, Nicolas J; Garzoni, Christian; Cavassini, Matthias; Fux, Christoph A; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel; Hirsch, Hans H (2009). Incidence and outcome of progressive multifocal leukoencephalopathy over 20 years of the Swiss HIV Cohort Study. Clinical infectious diseases, 48(10), pp. 1459-66. Cary, N.C.: The University of Chicago Press 10.1086/598335

Khanna, Nina; Wolbers, Marcel; Mueller, Nicolas J; Garzoni, Christian; Du Pasquier, Renaud A; Fux, Christoph A; Vernazza, Pietro; Bernasconi, Enos; Viscidi, Raphael; Battegay, Manuel; Hirsch, Hans H (2009). JC virus-specific immune responses in human immunodeficiency virus type 1 patients with progressive multifocal leukoencephalopathy. Journal of virology, 83(9), pp. 4404-11. Baltimore: American Society for Microbiology 10.1128/JVI.02657-08

Rotger, Margalida; Bayard, Cornelia; Taffé, Patrick; Martinez, Raquel; Cavassini, Matthias; Bernasconi, Enos; Battegay, Manuel; Hirschel, Bernard; Furrer, Hansjakob; Witteck, Andrea; Weber, Rainer; Ledergerber, Bruno; Telenti, Amalio; Tarr, Philip E (2009). Contribution of genome-wide significant single-nucleotide polymorphisms and antiretroviral therapy to dyslipidemia in HIV-infected individuals: a longitudinal study. Circulation - cardiovascular genetics, 2(6), pp. 621-8. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1161/CIRCGENETICS.109.874412

Ballif, Marie; Ledergerber, Bruno; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Schmid, Patrick; Hirschel, Bernard; Furrer, Hansjakob; Rickenbach, Martin; Opravil, Milos; Weber, Rainer (2009). Impact of previous virological treatment failures and adherence on the outcome of antiretroviral therapy in 2007. PLoS ONE, 4(12), e8275. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0008275

Conen, Anna; Fehr, Jan; Glass, Tracy R; Furrer, Hansjakob; Weber, Rainer; Vernazza, Pietro; Hirschel, Bernard; Cavassini, Matthias; Bernasconi, Enos; Bucher, Heiner C; Battegay, Manuel (2009). Self-reported alcohol consumption and its association with adherence and outcome of antiretroviral therapy in the Swiss HIV Cohort Study. Antiviral therapy, 14(3), pp. 349-57. London: International Medical Press

von Wyl, Viktor; Yerly, Sabine; Bürgisser, Philippe; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hirschel, Bernard; Vernazza, Pietro L; Francioli, Patrick; Bonhoeffer, Sebastian; Ledergerber, Bruno; Günthard Huldrych, F; Swiss HIV Cohort, Study (2009). Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. Clinical infectious diseases, 48(7), pp. 979-87. Cary, N.C.: The University of Chicago Press 10.1086/597352

Young, Jim; Glass, Tracy R; Bernasconi, Enos; Rickenbach, Martin; Furrer, Hansjakob; Hirschel, Bernard; Tarr, Philip E; Vernazza, Pietro; Battegay, Manuel; Bucher, Heiner C (2009). Hierarchical modeling gave plausible estimates of associations between metabolic syndrome and components of antiretroviral therapy. Journal of clinical epidemiology, 62(6), pp. 632-41. New York, N.Y.: Elsevier 10.1016/j.jclinepi.2008.07.015

Vo, Thi Tuyet Nhung; Ledergerber, Bruno; Keiser, Olivia; Hirschel, Bernard; Furrer, Hansjakob; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Weber, Rainer (2008). Durability and outcome of initial antiretroviral treatments received during 2000--2005 by patients in the Swiss HIV Cohort Study. Journal of infectious diseases, 197(12), pp. 1685-94. Cary, N.C.: The University of Chicago Press 10.1086/588141

Fux, Christoph A; Rauch, Andri; Simcock, Mathew; Bucher, Heiner C; Hirschel, Bernard; Opravil, Milos; Vernazza, Pietro; Cavassini, Matthias; Bernasconi, Enos; Elzi, Luigia; Furrer, Hansjakob (2008). Tenofovir use is associated with an increase in serum alkaline phosphatase in the Swiss HIV Cohort Study. Antiviral therapy, 13(8), pp. 1077-82. London: International Medical Press

Khanna, Nina; Opravil, Milos; Furrer, Hansjakob; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Hirschel, Bernard; Battegay, Manuel; Kaufmann, Gilbert R (2008). CD4+ T cell count recovery in HIV type 1-infected patients is independent of class of antiretroviral therapy. Clinical infectious diseases, 47(8), pp. 1093-101. Cary, N.C.: The University of Chicago Press 10.1086/592113

von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Bürgisser, Philippe; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hirschel, Bernard; Vernazza, Pietro L; Rickenbach, Martin; Ledergerber, Bruno; Günthard, Huldrych F (2008). Factors associated with the emergence of K65R in patients with HIV-1 infection treated with combination antiretroviral therapy containing tenofovir. Clinical infectious diseases, 46(8), pp. 1299-309. Cary, N.C.: The University of Chicago Press 10.1086/528863

Glass, Tracy R; De Geest, Sabina; Hirschel, Bernard; Battegay, Manuel; Furrer, Hansjakob; Covassini, Matthias; Vernazza, Pietro L; Bernasconi, Enos; Rickenboch, Martin; Weber, Rainer; Bucher, Heiner C (2008). Self-reported non-adherence to antiretroviral therapy repeatedly assessed by two questions predicts treatment failure in virologically suppressed patients. Antiviral therapy, 13(1), pp. 77-85. London: International Medical Press

El Amari, Emmanuelle Boffi; Toutous-Trellu, Laurence; Gayet-Ageron, Angèle; Baumann, Michele; Cathomas, Gieri; Steffen, Ingrid; Erb, Peter; Mueller, Nicolas J; Furrer, Hansjakob; Cavassini, Matthias; Vernazza, Pietro; Hirsch, Hans H; Bernasconi, Enos; Hirschel, Bernard (2008). Predicting the evolution of Kaposi sarcoma, in the highly active antiretroviral therapy era. AIDS, 22(9), pp. 1019-28. Hagerstown, Md.: Lippincott Williams & Wilkins

Keiser, Olivia; Fellay, Jacques; Opravil, Milos; Hirsch, Hans H; Hirschel, Bernard; Bernasconi, Enos; Vernazza, Pietro L; Rickenbach, Martin; Telenti, Amalio; Furrer, Hansjakob (2007). Adverse events to antiretrovirals in the Swiss HIV Cohort Study: effect on mortality and treatment modification. Antiviral therapy, 12(8), pp. 1157-64. London: International Medical Press

Glass, Tracy R; De Geest, Sabina; Weber, Rainer; Vernazza, Pietro L; Rickenbach, Martin; Furrer, Hansjakob; Bernasconi, Enos; Cavassini, Matthias; Hirschel, Bernard; Battegay, Manuel; Bucher, Heiner C (2006). Correlates of self-reported nonadherence to antiretroviral therapy in HIV-infected patients: the Swiss HIV Cohort Study. Journal of acquired immune deficiency syndromes JAIDS, 41(3), pp. 385-92. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/01.qai.0000186371.95301.52

Keiser, Olivia; Martinez de Tejada, Begoña; Wunder, Dorothea; Chapuis-Taillard, Caroline; Zellweger, Claudine; Zinkernagel, Annelies S; Elzi, Luigia; Schmid, Patrick; Bernasconi, Enos; Aebi-Popp, Karoline; Rickenbach, Martin (2006). Frequency of gynecologic follow-up and cervical cancer screening in the Swiss HIV cohort study. Journal of acquired immune deficiency syndromes JAIDS, 43(5), pp. 550-555. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/01.qai.0000245884.66509.7a

Eigenmann, Christina; Flepp, Markus; Bernasconi, Enos; Schiffer, Veronique; Telenti, Amalio; Bucher, Heiner; Wagels, Thomas; Egger, Martin; Furrer, Hansjakob (2003). Low Incidence of Community-Acquired Pneumonia among Human Immunodeficiency Virus-Infected Patients after Interruption of Pneumocystis carinii Pneumonia Prophylaxis. Clinical infectious diseases, 36(7), pp. 917-921. The University of Chicago Press 10.1086/368190

Opravil, Milos; Hirschel, Bernard; Lazzarin, Adriano; Furrer, Hansjakob; Chave, Jean-Philippe; Yerly, Sabine; Bisset, Leslie R.; Fischer, Marek; Vernazza, Pietro; Bernasconi, Enos; Battegay, Manuel; Ledergerber, Bruno; Günthard, Huldrych; Howe, Colin; Weber, Rainer; Perrin, Luc (2002). A Randomized Trial of Simplified Maintenance Therapy with Abacavir, Lamivudine, and Zidovudine in Human Immunodeficiency Virus Infection. Journal of infectious diseases, 185(9), pp. 1251-1260. The University of Chicago Press 10.1086/340312

Conference or Workshop Item

Gisler, Valentin; Kraus, David; Nemeth, Johannes; Lecompte, Marthe Than; Merz, Laurent; Stoeckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Weber, Rainer; Cavassini, Matthias; Calmy, Alexandra; Elzi, Luigia; Furrer, Hansjakob (2 November 2014). AIDS defining opportunistic infections in patients with high CD4 counts in the combination antiretroviral therapy (cART) era: things ain't what they used to be. Journal of the International AIDS Society, 17(Suppl 3), p. 19621. BioMed Central 10.7448/IAS.17.4.19621

Aebi-Popp, Karoline; Kouyos, Roger; Bertisch, Barbara; Staehelin, Cornelia Johanna; Hoesli, Irene; Rickenbach, Martin; Thorne, Claire; Grawe, Claudia; Bernasconi, Enos; Cavassini, Matthias; de Tejada, Begona Martinez; Stoeckle, Marcel; Lecompte, Thanh; Rudin, Christoph; Fehr, Jan (2014). Loss to follow-up of HIV-infected women after delivery: The Swiss HIV Cohort Study and the Swiss Mother and Child HIV Cohort Study. Journal of the International AIDS Society, 17(4,Suppl3), p. 19535. BioMed Central 10.7448/IAS.17.4.19535

Working Paper

Muri, Jonathan; Cecchinato, Valentina; Cavalli, Andrea; Shanbhag, Akanksha A; Matkovic, Milos; Biggiogero, Maira; Maida, Pier Andrea; Toscano, Chiara; Ghovehoud, Elaheh; Danelon-Sargenti, Gabriela; Gong, Tao; Piffaretti, Pietro; Bianchini, Filippo; Crivelli, Virginia; Podešvová, Lucie; Pedotti, Mattia; Jarrossay, David; Sgrignani, Jacopo; Thelen, Sylvia; Uhr, Mario; ... (23 May 2022). Anti-chemokine antibodies after SARS-CoV-2 infection correlate with favorable disease course. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.05.23.493121

Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Gunthard, Huldrych; Libby, Peter; Boerwinkle, Eric; McLaren, Paul; Ballantyne, Christie M; Grinspoon, Steven K; Natarajan, Pradeep; Fellay, Jacques (7 November 2020). Increased CHIP Prevalence Amongst People Living with HIV. (medRxiv). Cold Spring Harbor Laboratory 10.1101/2020.11.06.20225607

Dataset

Sculier, Delphine; Wandeler, Gilles; Yerly, Sabine; Marinosci, Annalisa; Stoeckle, Marcel; Bernasconi, Enos; Braun, Dominique L; Vernazza, Pietro; Cavassini, Matthias; Buzzi, Marta; Metzner, Karin J; Decosterd, Laurent; Günthard, Huldrych F; Schmid, Patrick; Limacher, Andreas; Egger, Matthias; Calmy, Alexandra; Swiss HIV, Cohort Study (2020). Efficacy and safety of dolutegravir plus emtricitabine versus standard ART for the maintenance of HIV-1 suppression: 48-week results of the factorial, randomized, non-inferiority SIMPL-HIV trial [Dataset]. University of Bern