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Gorecka-Mazur, Agnieszka; Krygowska-Wajs, Anna; Furgala, Agata; Li, Jiaqi; Misselwitz, Benjamin; Pietraszko, Wojciech; Kwinta, Borys; Yilmaz, Bahtiyar (2024). Associations between gut microbiota characteristics and non-motor symptoms following pharmacological and surgical treatments in Parkinson's disease patients. Neurogastroenterology and motility, 36(8), e14846. Blackwell Science 10.1111/nmo.14846
Carlé, Caroline; Boucher, Delphine; Morelli, Luisa; Larue, Camille; Ovtchinnikova, Ekaterina; Battut, Louise; Boumessid, Kawthar; Airaud, Melvin; Quaranta-Nicaise, Muriel; Ravanat, Jean-Luc; Dietrich, Gilles; Menard, Sandrine; Eberl, Gérard; Barnich, Nicolas; Mas, Emmanuel; Carriere, Marie; Al Nabhani, Ziad; Barreau, Frédérick (2024). Correction: Perinatal foodborne titanium dioxide exposure-mediated dysbiosis predisposes mice to develop colitis through life. Particle and fibre toxicology, 21(1) BioMed Central 10.1186/s12989-024-00570-0
Jordi, Sebastian Bruno Ulrich; Misselwitz, Benjamin (2024). Refining the Concept of Microscopic Colitis: HLA Signatures Discriminating Collagenous and Lymphocytic Colitis. Journal of Crohn's & colitis, 18(3), pp. 339-340. 10.1093/ecco-jcc/jjad211
Wyss, Jacqueline; Raselli, Tina; Wyss, Annika; Telzerow, Anja; Rogler, Gerhard; Krupka, Niklas; Yilmaz, Bahtiyar; Schmidt, Thomas S B; Misselwitz, Benjamin (2024). Development of non-alcoholic steatohepatitis is associated with gut microbiota but not with oxysterol enzymes CH25H, EBI2, or CYP7B1 in mice. BMC microbiology, 24(1), p. 69. BioMed Central 10.1186/s12866-024-03195-7
Bai, Xiaopeng; De Palma, Giada; Boschetti, Elisa; Nishihara, Yuichiro; Lu, Jun; Shimbori, Chiko; Costanzini, Anna; Saqib, Zarwa; Kraimi, Narjis; Sidani, Sacha; Hapfelmeier, Siegfried; Macpherson, Andrew J; Verdu, Elena F; De Giorgio, Roberto; Collins, Stephen M; Bercik, Premysl (2024). Vasoactive intestinal polypeptide plays a key role in the microbial-neuroimmune control of intestinal motility. Cellular and molecular gastroenterology and hepatology, 17(3), pp. 383-398. Elsevier 10.1016/j.jcmgh.2023.11.012
Ardeshir, Amir; Gensollen, Thomas; Zeng, Melody; Al Nabhani, Ziad; Blumberg, Richard (2024). Editorial: The early life window of opportunity: role of the microbiome on immune system imprinting. Frontiers in immunology, 15 Frontiers Research Foundation 10.3389/fimmu.2024.1417060
Carlé, Caroline; Boucher, Delphine; Morelli, Luisa; Larue, Camille; Ovtchinnikova, Ekaterina; Battut, Louise; Boumessid, Kawthar; Airaud, Melvin; Quaranta-Nicaise, Muriel; Ravanat, Jean-Luc; Dietrich, Gilles; Menard, Sandrine; Eberl, Gérard; Barnich, Nicolas; Mas, Emmanuel; Carriere, Marie; Al Nabhani, Ziad; Barreau, Frédérick (2023). Perinatal foodborne titanium dioxide exposure-mediated dysbiosis predisposes mice to develop colitis through life. Particle and fibre toxicology, 20(1), p. 45. BioMed Central 10.1186/s12989-023-00555-5
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Luo, Jinjin; Li, Jiaqi; Li, Peng; Liang, Xi; Hassan, Hozeifa Mohamed; Moreau, Richard; Li, Jun (2023). Acute-on-chronic liver failure: far to go-a review. Critical care (London, England), 27(1), p. 259. 10.1186/s13054-023-04540-4
Hassan, Mohsin; Juanola, Oriol; Huber, Stefania; Kellmann, Philipp; Zimmermann, Jakob; Lazzarini, Edoardo; Ganal-Vonarburg, Stephanie C; Gomez de Agüero, Mercedes; Moghadamrad, Sheida (2023). Absence of gut microbiota impairs depletion of Paneth cells but not goblet cells in germ-free Atoh1lox/lox VilCreERT2 mice. American journal of physiology. Gastrointestinal and liver physiology, 324(6), G426-G437. American Physiological Society 10.1152/ajpgi.00123.2022
Planchette, Arielle Louise; Schmidt, Cédric; Burri, Olivier; Gomez de Agüero, Mercedes; Radenovic, Aleksandra; Mylonas, Alessio; Extermann, Jérôme (2023). Optical imaging of the small intestine immune compartment across scales. Communications biology, 6(1), p. 352. Springer Nature 10.1038/s42003-023-04642-3
Jakob, Manuel O; Spari, Daniel; Sánchez Taltavull, Daniel; Salm, Lilian; Yilmaz, Bahtiyar; Doucet Ladevèze, Rémi; Mooser, Catherine; Pereyra, David; Ouyang, Ye; Schmidt, Theresa; Mattiola, Irene; Starlinger, Patrick; Stroka, Deborah; Tschan, Franziska; Candinas, Daniel; Gasteiger, Georg; Klose, Christoph S N; Diefenbach, Andreas; Gomez de Agüero, Mercedes and Beldi, Guido (2023). ILC3s restrict the dissemination of intestinal bacteria to safeguard liver regeneration after surgery. Cell reports, 42(3), p. 112269. Cell Press 10.1016/j.celrep.2023.112269
Birchenough, George M H; Schroeder, Bjoern O; Sharba, Sinan; Arike, Liisa; Recktenwald, Christian V; Puértolas-Balint, Fabiola; Subramani, Mahadevan V; Hansson, Karl T; Yilmaz, Bahtiyar; Lindén, Sara K; Bäckhed, Fredrik; Hansson, Gunnar C (2023). Muc2-dependent microbial colonization of the jejunal mucus layer is diet sensitive and confers local resistance to enteric pathogen infection. Cell reports, 42(2), p. 112084. Cell Press 10.1016/j.celrep.2023.112084
Papotto, Pedro H; Yilmaz, Bahtiyar; Pimenta, Gonçalo; Mensurado, Sofia; Cunha, Carolina; Fiala, Gina J; Gomes da Costa, Daniel; Gonçalves-Sousa, Natacha; Chan, Brian H K; Blankenhaus, Birte; Domingues, Rita G; Carvalho, Tânia; Hepworth, Matthew R; Macpherson, Andrew J; Allen, Judith E; Silva-Santos, Bruno (2023). Maternal γδ T cells shape offspring pulmonary type 2 immunity in a microbiota-dependent manner. Cell reports, 42(2), p. 112074. Cell Press 10.1016/j.celrep.2023.112074
Wang, Renying; Zhang, Peijing; Wang, Jingjing; Ma, Lifeng; E, Weigao; Suo, Shengbao; Jiang, Mengmeng; Li, Jiaqi; Chen, Haide; Sun, Huiyu; Fei, Lijiang; Zhou, Ziming; Zhou, Yincong; Chen, Yao; Zhang, Weiqi; Wang, Xinru; Mei, Yuqing; Sun, Zhongyi; Yu, Chengxuan; Shao, Jikai; ... (2023). Construction of a cross-species cell landscape at single-cell level. Nucleic acids research, 51(2), pp. 501-516. Oxford University Press 10.1093/nar/gkac633
Chandiwana, Panashe; Munjoma, Privilege Tendai; Mazhandu, Arthur John; Li, Jiaqi; Bärtschi, Isabel; Wyss, Jacqueline; Jordi, Sebastian Bruno Ulrich; Mazengera, Lovemore Ronald; Yilmaz, Bahtiyar; Misselwitz, Benjamin; Duri, Kerina (2023). Antenatal gut microbiome profiles and effect on pregnancy outcome in HIV infected and HIV uninfected women in a resource limited setting. BMC microbiology, 23(1), p. 4. BioMed Central 10.1186/s12866-022-02747-z
Matute, Juan D; Duan, Jinzhi; Flak, Magdalena B; Griebel, Paul; Tascon-Arcila, Jose A; Doms, Shauni; Hanley, Thomas; Antanaviciute, Agne; Gundrum, Jennifer; Mark Welch, Jessica L; Sit, Brandon; Abtahi, Shabnam; Fuhler, Gwenny M; Grootjans, Joep; Tran, Florian; Stengel, Stephanie T; White, James R; Krupka, Niklas; Haller, Dirk; Clare, Simon; ... (2023). Intelectin-1 binds and alters the localization of the mucus barrier-modifying bacterium Akkermansia muciniphila. The Journal of experimental medicine, 220(1) Rockefeller Univ. Press 10.1084/jem.20211938
Kennedy, Katherine M; de Goffau, Marcus C; Perez-Muñoz, Maria Elisa; Arrieta, Marie-Claire; Bäckhed, Fredrik; Bork, Peer; Braun, Thorsten; Bushman, Frederic D; Dore, Joel; de Vos, Willem M; Earl, Ashlee M; Eisen, Jonathan A; Elovitz, Michal A; Ganal-Vonarburg, Stephanie C; Gänzle, Michael G; Garrett, Wendy S; Hall, Lindsay J; Hornef, Mathias W; Huttenhower, Curtis; Konnikova, Liza; ... (2023). Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature, 613(7945), pp. 639-649. Macmillan Journals Ltd. 10.1038/s41586-022-05546-8
Marchukov, Dmitrij; Li, Jiaqi; Juillerat, Pascal; Misselwitz, Benjamin; Yilmaz, Bahtiyar (2023). Benchmarking microbial DNA enrichment protocols from human intestinal biopsies. Frontiers in genetics, 14(1184473), p. 1184473. Frontiers Media SA 10.3389/fgene.2023.1184473
Remund, Barblin; Yilmaz, Bahtiyar; Sokollik, Christiane (2023). D-Lactate: Implications for Gastrointestinal Diseases. Children, 10(6), p. 945. MDPI 10.3390/children10060945
Munjoma, Privilege Tendai; Chandiwana, Panashe; Wyss, Jacqueline; Mazhandu, Arthur John; Jordi, Sebastian Bruno Ulrich; Gutsire, Rutendo; Katsidzira, Leolin; Yilmaz, Bahtiyar; Misselwitz, Benjamin; Duri, Kerina (2023). Immune activation and inflammation in lactating women on combination antiretroviral therapy: role of gut dysfunction and gut microbiota imbalance. Frontiers in immunology, 14(1280262), p. 1280262. Frontiers Research Foundation 10.3389/fimmu.2023.1280262
Yilmaz, Bahtiyar; Fuhrer, Tobias; Morgenthaler, Deborah; Krupka, Niklas; Wang, Daoming; Spari, Daniel; Candinas, Daniel; Misselwitz, Benjamin; Beldi, Guido; Sauer, Uwe; Macpherson, Andrew J (2022). Plasticity of the adult human small intestinal stoma microbiota. Cell host & microbe, 30(12), 1773-1787.e6. Cell Press 10.1016/j.chom.2022.10.002
Wyss, Jacqueline; Raselli, Tina; Wyss, Annika; Telzerov, Anja; Rogler, Gerhard; Krupka, Niklas; Yilmaz, Bahtiyar; Schmidt, Thomas SB; Misselwitz, Benjamin (2 December 2022). Development of non-alcoholic steatohepatitis is associated with gut microbiota but not oxysterol synthesis (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.12.02.518833
Jordi, Sebastian Bruno Ulrich; Lang, Brian Matthew; Wyss, Jacqueline; Auschra, Bianca; Yilmaz, Bahtiyar; Krupka, Niklas; Greuter, Thomas; Schreiner, Philipp; Biedermann, Luc; Preisig, Martin; von Känel, Roland; Rogler, Gerhard; Begré, Stefan; Misselwitz, Benjamin (2022). The personality traits activity, self-reproach, and negative affect jointly predict clinical recurrence, depressive symptoms, and low quality of life in inflammatory bowel disease patients. Journal of gastroenterology, 57(11), pp. 848-866. Springer 10.1007/s00535-022-01902-7
Schneider, Romano; Kraljević, Marko; Peterli, Ralph; Rohm, Theresa V; Bosch, Angela J T; Low, Andy J Y; Keller, Lena; AlAsfoor, Shefaa; Häfliger, Simon; Yilmaz, Bahtiyar; Peterson, Caspar J; Lazaridis, Ioannis I; Vonaesch, Pascale; Delko, Tarik; Cavelti-Weder, Claudia (2022). Roux-en-Y gastric bypass with a long versus a short biliopancreatic limb improves weight loss and glycemic control in obese mice. Surgery for obesity and related diseases, 18(11), pp. 1286-1297. Elsevier 10.1016/j.soard.2022.06.286
Jeckel, Adriana M.; Beran, Franziska; Züst, Tobias; Younkin, Gordon; Petschenka, Georg; Pokharel, Prayan; Dreisbach, Domenic; Ganal-Vonarburg, Stephanie Christine; Robert, Christelle Aurélie Maud (2022). Metabolization and sequestration of plant specialized metabolites in insect herbivores: Current and emerging approaches. Frontiers in physiology, 13(1001032), p. 1001032. Frontiers Research Foundation 10.3389/fphys.2022.1001032
Perruzza, Lisa; Strati, Francesco; Raneri, Matteo; Li, Hai; Gargari, Giorgio; Rezzonico-Jost, Tanja; Palatella, Martina; Kwee, Ivo; Morone, Diego; Seehusen, Frauke; Sonego, Paolo; Donati, Claudio; Franceschi, Pietro; Macpherson, Andrew J; Guglielmetti, Simone; Greiff, Victor; Grassi, Fabio (2022). Apyrase-mediated amplification of secretory IgA promotes intestinal homeostasis. Cell reports, 40(3), p. 111112. Cell Press 10.1016/j.celrep.2022.111112
Ignacio, Aline; Shah, Kathleen; Bernier-Latmani, Jeremiah; Köller, Yasmin; Coakley, Gillian; Moyat, Mati; Hamelin, Romain; Armand, Florence; Wong, Nick C; Ramay, Hena; Thomson, Carolyn A; Burkhard, Regula; Wang, Haozhe; Dufour, Antoine; Geuking, Markus B; McDonald, Braedon; Petrova, Tatiana V; Harris, Nicola L; McCoy, Kathy D (2022). Small intestinal resident eosinophils maintain gut homeostasis following microbial colonization. Immunity, 55(7), 1250-1267.e12. Elsevier 10.1016/j.immuni.2022.05.014
Rohm, Theresa V; Keller, Lena; Bosch, Angela J T; AlAsfoor, Shefaa; Baumann, Zora; Thomas, Amandine; Wiedemann, Sophia J; Steiger, Laura; Dalmas, Elise; Wehner, Josua; Rachid, Leila; Mooser, Catherine; Yilmaz, Bahtiyar; Fernandez Trigo, Nerea; Jauch, Annaise J; Wueest, Stephan; Konrad, Daniel; Henri, Sandrine; Niess, Jan H; Hruz, Petr; ... (2022). Targeting colonic macrophages improves glycemic control in high-fat diet-induced obesity. Communications biology, 5(1), p. 370. Springer Nature 10.1038/s42003-022-03305-z
Shmeleva, Evgeniya V; Gomez de Agüero, Mercedes; Wagner, Josef; Enright, Anton J; Macpherson, Andrew J; Ferguson, Brian J; Smith, Geoffrey L (2022). Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response. PLoS pathogens, 18(4), e1009854. Public Library of Science 10.1371/journal.ppat.1009854
Mossad, Omar; Batut, Bérénice; Yilmaz, Bahtiyar; Dokalis, Nikolaos; Mezö, Charlotte; Nent, Elisa; Nabavi, Lara Susann; Mayer, Melanie; Maron, Feres José Mocayar; Buescher, Joerg M; Gomez de Agüero, Mercedes; Szalay, Antal; Lämmermann, Tim; Macpherson, Andrew J; Ganal-Vonarburg, Stephanie C; Backofen, Rolf; Erny, Daniel; Prinz, Marco; Blank, Thomas (2022). Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine. Nature neuroscience, 25(3), pp. 295-305. Nature America 10.1038/s41593-022-01027-3
Fregolente, L.G.; Warncke, J.D.; van der Meer, J.; Schmidt, M.; Khatami, R.; Macpherson, A.J.; Yilmaz, B.; Bassetti, C.L.A. (2022). SPHYNCS: Gut microbiota composition is different in Narcolepsy type 1 and Narcolepsy Borderland. Sleep medicine, 100, S167. Elsevier 10.1016/j.sleep.2022.05.452
Chandiwana, Panashe; Munjoma, Privilege T; Mazhandu, Arthur J; Mazengera, Lovemore R; Misselwitz, Benjamin; Jordi, Sebastian B U; Yilmaz, Bahtiyar; Duri, Kerina (2022). Antenatal and postpartum immunological markers levels in women with HIV infection and malnutrition in a low resource setting: A pilot study. European journal of inflammation, 20, 1721727X2211392. Sage 10.1177/1721727X221139261
Sankowski, Roman; Ahmari, Jasmin; Mezö, Charlotte; Hrabě de Angelis, Anna Lena; Fuchs, Vidmante; Utermöhlen, Olaf; Buch, Thorsten; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Erny, Daniel (2021). Commensal microbiota divergently affect myeloid subsets in the mammalian central nervous system during homeostasis and disease. The EMBO journal, 40(23), e108605. EMBO Press 10.15252/embj.2021108605
Sánchez-Taltavull, Daniel; Castelo-Székely, Violeta; Murugan, Shaira; Hamley, Jonathan I. D.; Rollenske, Tim; Ganal-Vonarburg, Stephanie C.; Büchi, Isabel; Keogh, Adrian; Li, Hai; Salm, Lilian; Spari, Daniel; Yilmaz, Bahtiyar; Zimmermann, Jakob; Gerfin, Michael; Roldan, Edgar; Beldi, Guido (2021). Regular testing of asymptomatic healthcare workers identifies cost-efficient SARS-CoV-2 preventive measures. PLoS ONE, 16(11), e0258700. Public Library of Science 10.1371/journal.pone.0258700
Erny, Daniel; Dokalis, Nikolaos; Mezö, Charlotte; Castoldi, Angela; Mossad, Omar; Staszewski, Ori; Frosch, Maximilian; Villa, Matteo; Fuchs, Vidmante; Mayer, Arun; Neuber, Jana; Sosat, Janika; Tholen, Stefan; Schilling, Oliver; Vlachos, Andreas; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Pearce, Edward J and Prinz, Marco (2021). Microbiota-derived acetate enables the metabolic fitness of the brain innate immune system during health and disease. Cell metabolism, 33(11), 2260-2276.e7. Elsevier 10.1016/j.cmet.2021.10.010
Aswendt, Markus; Green, Claudia; Sadler, Rebecca; Llovera, Gemma; Dzikowski, Lauren; Heindl, Steffanie; Gomez de Agüero, Mercedes; Diedenhofen, Michael; Vogel, Stefanie; Wieters, Frederique; Wiedermann, Dirk; Liesz, Arthur; Hoehn, Mathias (2021). The gut microbiota modulates brain network connectivity under physiological conditions and after acute brain ischemia. iScience, 24(10), p. 103095. Elsevier 10.1016/j.isci.2021.103095
Rollenske, Tim; Burkhalter, Sophie; Muerner, Lukas; von Gunten, Stephan; Lukasiewicz, Jolanta; Wardemann, Hedda; Macpherson, Andrew J. (2021). Parallelism of intestinal secretory IgA shapes functional microbial fitness. Nature, 598(7882), pp. 657-661. Springer Nature 10.1038/s41586-021-03973-7
Stehle, Christina; Rückert, Timo; Fiancette, Rémi; Gajdasik, Dominika W; Willis, Claire; Ulbricht, Carolin; Durek, Pawel; Mashreghi, Mir-Farzin; Finke, Daniela; Hauser, Anja Erika; Withers, David R; Chang, Hyun-Dong; Zimmermann, Jakob; Romagnani, Chiara (2021). T-bet and RORα control lymph node formation by regulating embryonic innate lymphoid cell differentiation. Nature immunology, 22(10), pp. 1231-1244. Nature Publishing Group 10.1038/s41590-021-01029-6
Yilmaz, Bahtiyar; Ruckstuhl, Lisa; Müllhaupt, Beat; Magenta, Lorenzo; Kuster, Melanie Harrer; Clerc, Olivier; Torgler, Ralph; Semmo, Nasser (2021). Pilot Sub-Study of the Effect of Hepatitis C Cure by Glecaprevir/Pibrentasvir on the Gut Microbiome of Patients with Chronic Hepatitis C Genotypes 1 to 6 in the Mythen Study. Pharmaceuticals, 14(9) MDPI 10.3390/ph14090931
Papotto, Pedro H; Yilmaz, Bahtiyar; Silva-Santos, Bruno (2021). Crosstalk between γδ T cells and the microbiota. Nature microbiology, 6(9), pp. 1110-1117. Springer Nature 10.1038/s41564-021-00948-2
Denoth, Luisa; Juillerat, Pascal; Kremer, Andreas E; Rogler, Gerhard; Scharl, Michael; Yilmaz, Bahtiyar; Bluemel, Sena (2021). Modulation of the Mucosa-Associated Microbiome Linked to the PTPN2 Risk Gene in Patients with Primary Sclerosing Cholangitis and Ulcerative Colitis. Microorganisms, 9(8) MDPI 10.3390/microorganisms9081752
Deibel, Ansgar; Deng, Lu; Cheng, Chih-Yuan; Schlander, Michael; Ran, Tao; Lang, Brian; Krupka, Niklas; Beerenwinkel, Niko; Rogler, Gerhard; Wiest, Reiner; Sonnenberg, Amnon; Poleszczuk, Jan; Misselwitz, Benjamin (2021). Evaluating key characteristics of ideal colorectal cancer screening modalities: the microsimulation approach. Gastrointestinal endoscopy, 94(2), 379-390.e7. Elsevier 10.1016/j.gie.2021.02.013
Caparrós, Esther; Wiest, Reiner; Scharl, Michael; Rogler, Gerhard; Gutiérrez Casbas, Ana; Yilmaz, Bahtiyar; Wawrzyniak, Marcin; Francés, Rubén (2021). Dysbiotic microbiota interactions in Crohn's disease. Gut microbes, 13(1), p. 1949096. Landes Bioscience 10.1080/19490976.2021.1949096
Jordi, Sebastian Bruno Ulrich; Botte, Federica; Lang, Brian Matthew; Greuter, Thomas; Krupka, Niklas; Auschra, Bianca; Schreiner, Philipp; Sulz, Michael Christian; Biedermann, Luc; von Känel, Roland; Rogler, Gerhard; Begré, Stefan; Misselwitz, Benjamin (2021). Type D personality is associated with depressive symptoms and clinical activity in inflammatory bowel disease. Alimentary pharmacology & therapeutics, 54(1), pp. 53-67. Wiley-Blackwell 10.1111/apt.16365
Zhang, Yawen; Feng, Lijun; Wang, Xin; Fox, Mark; Luo, Liang; Du, Lijun; Chen, Binrui; Chen, Xiaoli; He, Huiqin; Zhu, Shuwen; Hu, Zhefang; Chen, Shujie; Long, Yanqin; Zhu, Yubin; Xu, Li; Deng, Yanyong; Misselwitz, Benjamin; Lang, Brian M; Yilmaz, Bahtiyar; Kim, John J; ... (2021). Low fermentable oligosaccharides, disaccharides, monosaccharides, and polyols diet compared with traditional dietary advice for diarrhea-predominant irritable bowel syndrome: a parallel-group, randomized controlled trial with analysis of clinical and microbiological factors associated with patient outcomes. The American journal of clinical nutrition, 113(6), pp. 1531-1545. Oxford University Press 10.1093/ajcn/nqab005
Kalbermatter, Cristina Lisa; Fernandez Trigo, Nerea; Christensen, Sandro; Ganal-Vonarburg, Stephanie Christine (2021). Maternal Microbiota, Early Life Colonization and Breast Milk Drive Immune Development in the Newborn. Frontiers in immunology, 12(683022), p. 683022. Frontiers Research Foundation 10.3389/fimmu.2021.683022
Maschmeyer, Patrick; Zimmermann, Jakob; Kühl, Anja Andrea (2021). Murine T-Cell Transfer Colitis as a Model for Inflammatory Bowel Disease. Methods in molecular biology, 2285, pp. 349-373. Springer 10.1007/978-1-0716-1311-5_26
Zimmermann, Jakob (2021). Evaluation of Cytokine Production at the Single Cell Level by Flow Cytometry Upon Polyclonal Stimulation. Methods in molecular biology, 2285, pp. 111-119. Springer 10.1007/978-1-0716-1311-5_9
Yilmaz, Bahtiyar; Mooser, Catherine; Keller, Irene; Li, Hai; Zimmermann, Jakob; Bosshard, Lars; Fuhrer, Tobias; Gomez de Agüero, Mercedes; Fernandez Trigo, Nerea; Tschanz-Lischer, Heidi; Limenitakis, Julien P.; Hardt, Wolf-Dietrich; McCoy, Kathleen; Stecher, Bärbel; Excoffier, Laurent; Sauer, Uwe; Ganal-Vonarburg, Stephanie C.; Macpherson, Andrew J. (2021). Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell host & microbe, 29(4), 650-663.e9. Cell Press 10.1016/j.chom.2021.02.001
Colombo, Alessio Vittorio; Sadler, Rebecca Katie; Llovera, Gemma; Singh, Vikramjeet; Roth, Stefan; Heindl, Steffanie; Sebastian Monasor, Laura; Verhoeven, Aswin; Peters, Finn; Parhizkar, Samira; Kamp, Frits; Gomez de Aguero, Mercedes; Macpherson, Andrew; Winkler, Edith; Herms, Jochen; Benakis, Corinne; Dichgans, Martin; Steiner, Harald; Giera, Martin; Haass, Christian; ... (2021). Microbiota-derived short chain fatty acids modulate microglia and promote Aβ plaque deposition. eLife, 10 eLife Sciences Publications 10.7554/eLife.59826
Juanola, Oriol; Hassan, Mohsin; Kumar, Pavitra; Yilmaz, Bahtiyar; Keller, Irene; Simillion, Cedric; Engelmann, Cornelius; Tacke, Frank; Dufour, Jean-François; De Gottardi, Andrea; Moghadamrad, Sheida (2021). Intestinal microbiota drives cholestasis-induced specific hepatic gene expression patterns. Gut microbes, 13(1), pp. 1-20. Taylor & Francis Group 10.1080/19490976.2021.1911534
Singh, Sumnima; Thompson, Jessica A; Yilmaz, Bahtiyar; Li, Hai; Weis, Sebastian; Sobral, Daniel; Truglio, Mauro; Aires da Silva, Frederico; Aguiar, Sandra; Carlos, Ana Rita; Rebelo, Sofia; Cardoso, Silvia; Gjini, Erida; Nuñez, Gabriel; Soares, Miguel P (2021). Loss of α-gal during primate evolution enhanced antibody-effector function and resistance to bacterial sepsis. Cell host & microbe, 29(3), 347-361.e12. Cell Press 10.1016/j.chom.2020.12.017
Rogler, Gerhard; Scharl, Michael; Spalinger, Marianne; Yilmaz, Bahtiyar; Zaugg, Michael; Hersberger, Martin; Schreiner, Philipp; Biedermann, Luc; Herfarth, Hans (2021). Diet and Inflammatory Bowel Disease: What Quality Standards Should Be Applied in Clinical and Laboratory Studies? Molecular nutrition & food research, 65(5), e2000514. Wiley 10.1002/mnfr.202000514
Bravo, Francisco; Macpherson, Jamie A; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathy D.; Macpherson, Andrew J.; Juillerat, Pascal (2021). Prospective Validation of CD-62L (L-Selectin) as Marker of Durable Response to Infliximab Treatment in Patients With Inflammatory Bowel Disease: A 5-Year Clinical Follow-up. Clinical and translational gastroenterology, 12(2), e00298. Wolters Kluwer Health 10.14309/ctg.0000000000000298
Ledergerber, Martina; Lang, Brian M; Heinrich, Henriette; Biedermann, Luc; Begré, Stefan; Zeitz, Jonas; Krupka, Niklas; Rickenbacher, Andreas; Turina, Matthias; Greuter, Thomas; Schreiner, Philipp; Roth, René; Siebenhüner, Alexander; Vavricka, Stephan R; Rogler, Gerhard; Beerenwinkel, Niko; Misselwitz, Benjamin (2021). Abdominal pain in patients with inflammatory bowel disease: association with single-nucleotide polymorphisms prevalent in irritable bowel syndrome and clinical management. BMC gastroenterology, 21(1), p. 53. BioMed Central 10.1186/s12876-021-01622-x
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Mager, Lukas; Riether, Carsten; Schürch, Christian; Banz Wälti, Yara; Wasmer, Marie-Hélène Christin; Stuber Roos, Regula; Theocharides, Alexandre; Li, Xiaohong; Xia, Yu; Saito, Hirohisa; Nakae, Susumu; Baerlocher, Gabriela M.; Manz, Markus G; McCoy, Kathleen; Macpherson, Andrew; Ochsenbein, Adrian; Beutler, Bruce; Krebs, Philippe (2015). IL-33 signaling contributes to the pathogenesis of myeloproliferative neoplasms. Journal of clinical investigation, 125(7), pp. 2579-2591. American Society for Clinical Investigation 10.1172/JCI77347
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Ganal, Stephanie; Gomez de Agüero Tamargo, Maria de la Mercedes (5 June 2015). Role of maternal microbiota in modulating gene expression and immunity in the neonatal intestine (Unpublished). In: Genomics Day. Bern. 05.06.2015.
Moghadamrad, Sheida; McCoy, Kathleen; Geuking, Markus; Sägesser, Hans; Kirundi, Jorum; Macpherson, Andrew; De Gottardi, Andrea (2015). Attenuated portal hypertension in germ-free mice: Function of bacterial flora on the development of mesenteric lymphatic and blood vessels. Hepatology, 61(5), pp. 1685-1695. Wiley Interscience 10.1002/hep.27698
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Macpherson, Andrew; McCoy, Kathleen (2015). Standardised animal models of host microbial mutualism. Mucosal immunology, 8(3), pp. 476-486. Nature Publishing Group 10.1038/mi.2014.113
Li, Hai; Limenitakis, Julien Periclis Jean; Ganal, Stephanie; Macpherson, Andrew (2015). Penetrability of the inner mucus layer: who is out there? EMBO reports, 16(2), pp. 127-129. Nature Publishing Group 10.15252/embr.201439943
Li, Hai; Limenitakis, Julien Periclis Jean; Fuhrer, Tobias; Geuking, Markus; Lawson, Melissa A; Wyss, Madeleine; Brugiroux, Sandrine; Keller, Irene; Macpherson, Jamie A; Rupp, Sandra; Stolp, Bettina; Stein, Jens Volker; Stecher, Bärbel; Sauer, Uwe; McCoy, Kathleen; Macpherson, Andrew (2015). The outer mucus layer hosts a distinct intestinal microbial niche. Nature communications, 6, p. 8292. Nature Publishing Group 10.1038/ncomms9292
Juillerat, Pascal (2015). P1557 Measurement of Funtional Blocade of TNF-alpha by anti-TNF Agents Is A Stronger Predictor Than Through Levels And Anti-Drug Antibodies: 3-Year Prospective Clinical Data (Unpublished). In: 23rd United European Gastroenterology Week (UEGW). Barcelona. 24.-28.10.2015.
Juillerat, Pascal; Andrew, Peter; Macpherson, James; Slack, Emma; Seibold, Frank Werner; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (2015). Measurement of functional blocade of TNF-alpha by anti-TNF agents is a stronger predictor than trough levels and anti-drug antibodies: 2-year prospective clinical data. Gastroenterology, 148(4), pp. 850-1. Elsevier
Gomez de Agüero Tamargo, Maria de la Mercedes (15 December 2014). Microbiota exposure during the pregnancy and the development of the innate immunity of the offspring (Unpublished). In: Sinergia retreat. Bern. 15.12.2014.
Ganal, Stephanie (4 December 2014). Outside-in and inside-out compartmentalisation of antibody responses to the commensal intestinal microbiota (Unpublished). In: Zürich Immunology Meeting. 04.12.2014.
McCoy, Kathleen (December 2014). Microbial colonisation in early-life impacts innate and adaptive immunity (Unpublished). In: British Society for Immunology Annual Congress. Brighton, UK. December 2014.
Proietti, Michele; Cornacchione, Vanessa; Rezzonico Jost, Tanja; Romagnani, Andrea; Faliti, Caterina Elisa; Perruzza, Lisa; Rigoni, Rosita; Radaelli, Enrico; Caprioli, Flavio; Preziuso, Silvia; Brannetti, Barbara; Thelen, Marcus; McCoy, Kathleen; Slack, Emma; Traggiai, Elisabetta; Grassi, Fabio (2014). ATP-gated ionotropic P2X7 receptor controls follicular T helper cell numbers in Peyer's patches to promote host-microbiota mutualism. Immunity, 41(5), pp. 789-801. Cell Press 10.1016/j.immuni.2014.10.010
Balmer, Maria L; Schürch, Christian; Saito, Yasuyuki; Geuking, Markus; Li, Hai; Cuenca, Miguelangel; Kovtonyuk, Larisa V; McCoy, Kathleen; Hapfelmeier, Siegfried; Ochsenbein, Adrian; Manz, Markus G; Slack, Emma; Macpherson, Andrew (2014). Microbiota-derived compounds drive steady-state granulopoiesis via MyD88/TICAM signaling. Journal of immunology, 193(10), pp. 5273-5283. American Association of Immunologists 10.4049/jimmunol.1400762
McCoy, Kathleen (November 2014). Microbial colonisation in early-life: impact on innate and adaptive immunity (Unpublished). In: Global Health Institute, EPFL Seminar Series. Lausanne, CH. November 2014.
Gomez de Agüero Tamargo, Maria de la Mercedes (20 October 2014). Microbiota exposure during the pregnancy and the development of the innate immunity of the offspring (Unpublished). In: Sinergia meeting. Basel. 20.10.2014.
Limenitakis, Julien Periclis Jean (October 2014). Assembly and curation of a genome-wide metabolic model of a gut commensal bacterial community (Unpublished). In: 2nd International SystemsX.ch Conference on Systems Biology. Lausanne. 20.10. + 23.10.2014.
Stefka, Andrew T; Feehley, Taylor; Tripathi, Prabhanshu; Qiu, Ju; McCoy, Kathleen; Mazmanian, Sarkis K; Tjota, Melissa Y; Seo, Goo-Young; Cao, Severine; Theriault, Betty R; Antonopoulos, Dionysios A; Zhou, Liang; Chang, Eugene B; Fu, Yang-Xin; Nagler, Cathryn R (2014). Commensal bacteria protect against food allergen sensitization. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(36), pp. 13145-13150. National Academy of Sciences NAS 10.1073/pnas.1412008111
Schaffer, Thomas; Schoepfer, Alain M; Seibold, Frank Werner; Juillerat, Pascal; Swiss Inflammatory Bowel Diseases Cohort Study Group, The (2014). Serum ficolin-2 correlates worse than fecal calprotectin and CRP with endoscopic Crohn's disease activity. Journal of Crohn's & Colitis, 8(9), pp. 1125-1132. Oxford University Press 10.1016/j.crohns.2014.02.014
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Kudira, Ramesh; Malinka, Thomas; Gomez de Agüero Tamargo, Maria de la Mercedes; Keogh, Adrian; Furer, Cynthia; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Secretion of IL-22 is modulated by CD39 and is required for liver regeneration post partial hepatectomy. In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (September 2014). Travel Award: Liver regeneration is not impacted in the absence of intestinal microbiota (Unpublished). In: Schweizerische Gesellschaft für Gastroenterologie (SGG) - Schweizerische Gesellschaft für Viszeralchirurgie (SGVC) Annual Congress. Interlaken. 11.-12.9.2014.
Wiest, Reiner; Lawson, Melissa; Geuking, Markus (2014). Reply to: "bacterial translocation in liver cirrhosis: site and role in fibrogenesis". Journal of hepatology, 61(3), pp. 710-711. Elsevier 10.1016/j.jhep.2014.06.004
Chu, Derek K; Jimenez-Saiz, Rodrigo; Verschoor, Christopher P; Walker, Tina D; Goncharova, Susanna; Llop-Guevara, Alba; Shen, Pamela; Gordon, Melissa E; Barra, Nicole G; Bassett, Jennifer D; Kong, Joshua; Fattouh, Ramzi; McCoy, Kathleen; Bowdish, Dawn M; Erjefält, Jonas S; Pabst, Oliver; Humbles, Alison A; Kolbeck, Roland; Waserman, Susan and Jordana, Manel (2014). Indigenous enteric eosinophils control DCs to initiate a primary Th2 immune response in vivo. Journal of experimental medicine, 211(8), pp. 1657-1672. Rockefeller University Press 10.1084/jem.20131800
Slack, Emma; Balmer, Maria Luisa; Macpherson, Andrew (2014). B cells as a critical node in the microbiota-host immune system network. Immunological reviews, 260(1), pp. 50-66. Wiley-Blackwell 10.1111/imr.12179
McCoy, Kathleen (July 2014). Microbial conditioning during early-life impact s immune regulation (Unpublished). In: 7th Seeon Conference ‘Microbiota, Probiota and Host’. Monastry Seeon/Chiemsee, Germany. July 2014.
McCoy, Kathleen (June 2014). Microbial conditioning during early-life impact s immune regulation (Unpublished). In: 2014 Prairie Infectious Immunology Meeting. Lake Hecla, Manitoba, Canada. June 2014.
Balmer, Maria Luisa; Slack, Emma; De Gottardi, Andrea; Lawson, Melissa; Hapfelmeier, Siegfried Hektor; Miele, Luca; Grieco, Antonio; Van Vlierberghe, Hans; Fahrner, René; Patuto, Nicola; Bernsmeier, Christine; Ronchi, Francesca; Wyss, Madeleine; Keogh-Stroka, Deborah M.; Dickgreber, Nina; Heim, Markus H; McCoy, Kathy D; Macpherson, Andrew (2014). The liver may act as a firewall mediating mutualism between the host and its gut commensal microbiota. Science translational medicine, 6(237), 237ra66. American Association for the Advancement of Science 10.1126/scitranslmed.3008618
Malinka, Thomas; Keogh, Adrian; Kudira, Ramesh; Moghadamrad, Sheida; McCoy, Kathleen; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (May 2014). Liver regeneration is not impacted in the absence of intestinal microbiota. (Unpublished). In: Annual meeting of the Swiss Surgical Society. Bern. 21.-23.05.2014.
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, Frank Werner; McCoy, Kathleen; Macpherson, Andrew (May 2014). CD62L (L-Selectin) Shedding for Assessment of Functional Blockade of TNF-Alpha in Anti-TNF treated Inflammatory Bowel Disease Patients: Clinical Feasibility and Perspectives. Gastroenterology, 146(5), p. 239. Elsevier
Gomez de Agüero Tamargo, Maria de la Mercedes (29 April 2014). Commensal microbiota exposure during the pregnancy shapes the development of the innate immune cell of the offspring (Unpublished). In: Sinergia meeting. Zurich. 29.04.2014.
Lécuyer, Emelyne; Rakotobe, Sabine; Lengliné-Garnier, Hélène; Lebreton, Corinne; Picard, Marion; Juste, Catherine; Fritzen, Rémi; Eberl, Gérard; McCoy, Kathleen; Macpherson, Andrew; Reynaud, Claude-Agnès; Cerf-Bensussan, Nadine; Gaboriau-Routhiau, Valérie (2014). Segmented filamentous bacterium uses secondary and tertiary lymphoid tissues to induce gut IgA and specific T helper 17 cell responses. Immunity, 40(4), pp. 608-620. Cell Press 10.1016/j.immuni.2014.03.009
Kwong Chung, Cheong Kwet Choy (14 April 2014). Systemic vs mucosal anti microbial specific CD4+ T cell responses following colonization (Unpublished). In: Meeting of the Swiss Immunology PhD students. 14.04.2014.
Ganal, Stephanie (3 April 2014). Characterization of maternal microbiota-dependent imprinting of the neonatal immune system (Unpublished). In: Zürich Immunology Meeting. 03.04.2014.
Li, Hai (21 March 2014). Compartmentalisation of microbiota dynamics and function along the intestinal tract (Unpublished). In: Annual Congress SSAI 2014. Davos. 21.03.2014.
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, J; Slack, Emma; Patuto, Nicola; Cahenzli, Julia; McCoy, Kathleen; Macpherson, Andrew (February 2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives (DOP060). Journal of Crohn's & Colitis, 8(Suppl1), pp. 43-44. Elsevier 10.1016/S1873-9946(14)60085-4
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Ganal, Stephanie; Macpherson, Andrew (2014). An ambulance for retinol. eLife, 3(e04246), e04246. eLife Sciences Publications 10.7554/eLife.04246
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Rupp, Sandra (2014). Impact of microbes on B cell development (Unpublished). In: 26th Meeting for Swiss PhD students in Immunology.
Ronchi, Francesca; Rupp, Sandra; Steinert, Anna; Wyss, Madeleine; McCoy, Kathleen; Macpherson, Andrew (2014). Microbiota-mediated fine-tuning of the threshold of intestinal inflammasome activation in host-microbial mutualism (Unpublished). In: EMIG2014. Glasgow, UK.
Juillerat, Pascal; Andrew, Peter Michael; Macpherson, James; Slack, Emma; Cahenzli, Julia; Seibold, F.; McCoy, Kathleen; Macpherson, Andrew (2014). CD62L (L-selectin) shedding for assessment of functional blockade of TNF alpha in anti-TNF treated IBD patients: clinical feasibility and perspectives. United european gastroenterology journal, 2(1suppl), A45-A46. Sage
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Mosconi, I.; Geuking, Markus; Zaiss, M. M.; Massacand, Jonathan; Aschwanden, C.; Kwong Chung, Cheong Kwet Choy; McCoy, Kathleen; Harris, N. L. (2013). Intestinal bacteria induce TSLP to promote mutualistic T-cell responses. Mucosal immunology, 6(6), pp. 1157-1167. Nature Publishing Group 10.1038/mi.2013.12
Balmer, Maria L.; Trueb, Beat; Zhuang, Lei; Slack, Emma; Beltraminelli, Helmut; Villiger, Peter Matthias (2013). Splicing defect of CD33 and inflammatory syndrome associated with occult bacterial infection. Journal of allergy and clinical immunology, 132(2), 490-493.e2. Mosby 10.1016/j.jaci.2013.03.027
Cahenzli, Julia (April 2013). Neonatal bacterial colonisation imprints long-term Immunoglobulin E levels (Unpublished). In: Annual Meeting of the SSAI and SSP. Bern Switzerland. April 2013.
Graubardt, Nadine; Fahrner, René; Trochsler, Markus; Keogh, Adrian; Breu, Karin; Furer, Cynthia; Keogh-Stroka, Deborah M.; Robson, Simon C.; Slack, Emma; Candinas, Daniel; Beldi, Guido (2013). Promotion of liver regeneration by natural killer cells in a murine model is dependent on extracellular adenosine triphosphate phosphohydrolysis. Hepatology, 57(5), pp. 1969-1979. Wiley Interscience 10.1002/hep.26008
Macpherson, Andrew; McCoy, Kathleen (2013). Stratification and compartmentalisation of immunoglobulin responses to commensal intestinal microbes. Seminars in immunology, 25(5), pp. 358-363. W.B. Saunders 10.1016/j.smim.2013.09.004
Cahenzli, Julia; Köller, Yasmin; Wyss, Madeleine; Geuking, Markus; McCoy, Kathleen (2013). Intestinal Microbial Diversity during Early-Life Colonization Shapes Long-Term IgE Levels. Cell host & microbe, 14(5), pp. 559-570. Cell Press 10.1016/j.chom.2013.10.004
Geuking, Markus B.; McCoy, Kathleen; Macpherson, Andrew J. (2013). Metabolites from intestinal microbes shape Treg. Cell research, 23(12), pp. 1339-1340. Nature Publishing Group 10.1038/cr.2013.125
Markle, J. G. M.; Frank, D. N.; Mortin-Toth, S.; Robertson, C. E.; Feazel, L. M.; Rolle-Kampczyk, U.; von Bergen, Melanie; McCoy, Kathleen; Macpherson, Andrew; Danska, J. S. (2013). Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity. Science, 339(6123), pp. 1084-1088. American Association for the Advancement of Science 10.1126/science.1233521
Cahenzli, Julia; Balmer, Maria Luisa; McCoy, Kathleen (2012). Microbial-immune cross-talk and regulation of the immune system. Immunology, 138(1), pp. 12-22. Wiley-Blackwell 10.1111/j.1365-2567.2012.03624.x
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